Index of /plants/demo_files

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]All_hpromoterRegions_BG_model_mkv_2.oligos2022-12-20 07:49 2.0K 
[TXT]Arabidopsis_thaliana_GSM1482283_MYB3R3-GFP_ChIP_peaks.bed2022-12-20 07:49 113K 
[ ]Arabidopsis_thaliana_methionine_genes_go-0009086.tab2022-12-20 07:49 7.5K 
[ ]Ballester_etal_elife_2014_4TFs_motifs.tf2022-12-20 07:49 67K 
[ ]Ballester_etal_elife_2014_hg18_cebpa_singletons.fa2022-12-20 07:49 2.5M 
[ ]Ballester_etal_elife_2014_hg18_foxa1_singletons.fa2022-12-20 07:49 2.5M 
[ ]Ballester_etal_elife_2014_hg18_hnf4a_singletons.fa2022-12-20 07:49 4.2M 
[ ]Ballester_etal_elife_2014_hg18_hnf6_singletons.fa2022-12-20 07:49 4.0M 
[TXT]Ballester_etal_elife_2014_module_beyondprimates_conserved_hg18_lift_to_hg19.bed2022-12-20 07:49 38K 
[ ]Ballester_etal_elife_2014_module_beyondprimates_conserved_hg18_lift_to_hg19.varbed2022-12-20 07:49 572K 
[TXT]Blow_2010_GSM348064_forebrain_p300_peaks.bed2022-12-20 07:49 91K 
[TXT]Blow_2010_GSM559653_midbrain_p300_peaks.bed2022-12-20 07:49 91K 
[TXT]CapStarrseq_Active_Prom_HELA_merge_IP.fasta2022-12-20 07:49 136K 
[TXT]CapStarrseq_Active_Prom_K562_merge_IP.fasta2022-12-20 07:49 175K 
[TXT]CapStarrseq_InactiveProm_FDR95_All_samples.fasta2022-12-20 07:49 3.4M 
[ ]Capstarr_selected_TFs.tf2022-12-20 07:49 8.1K 
[DIR]ChIP-seq_peaks/2022-12-20 07:58 -  
[TXT]Dmelanogaster_eve_up5000.fasta2022-12-20 07:49 5.6K 
[ ]Dmelanogaster_segmentation_12matrices.tf2022-12-20 07:49 3.5K 
[ ]Drosophila_melanogaster_eve_segmentation_sites_pval0.001.ft2022-12-20 07:49 5.3K 
[ ]Drosophila_melanogaster_eve_segmentation_sites_pval0.001_nocomments.ft2022-12-20 07:49 2.3K 
[ ]Ecoli_metabolic_network.tab2022-12-20 07:49 220K 
[ ]HOCOMOCO_Human_Ncor0.8_cor0.85_JUND_Demo.tf2022-12-20 07:49 31K 
[ ]Homer_l13_mis3_hyper_Oct4_matrices.tf2022-12-20 07:49 13K 
[TXT]Jun_Chip_seq_sequences.fasta2022-12-20 07:49 824K 
[ ]Jun_Chip_seq_sequences.fasta.zip2022-12-20 07:49 256K 
[ ]LICENSE2022-12-20 07:49 34K 
[ ]LexA.2nt_upstream-noorf-ovlp-2str.20.meme2022-12-20 07:49 19K 
[ ]LexA.2nt_upstream-noorf-ovlp-2str.20.tf2022-12-20 07:49 2.9K 
[ ]MEME_ChIP_Oct4_matrices.tf2022-12-20 07:49 19K 
[TXT]MET_up800-noorf.fasta2022-12-20 07:49 13K 
[ ]MET_up800-noorf_purge_benchmark.json2022-12-20 07:49 150  
[TXT]MET_up800-noorf_purge_log.txt2022-12-20 07:49 245  
[TXT]MET_up800-noorf_purged.fasta2022-12-20 07:49 13K 
[ ]Multi_algorithms_analysis_motif_set.tab2022-12-20 07:49 1.1K 
[ ]Mycoplasma_genitalium_upstream_-30_+29.fasta.gz2022-12-20 07:49 13K 
[TXT]Nakamura_GSM1368207_gamma8_mm10_ICN1_peaks.bed2022-12-20 07:49 265K 
[TXT]Nanog_peaks.fasta2022-12-20 07:49 4.1M 
[TXT]Oct4_peaks.fasta2022-12-20 07:49 4.2M 
[ ]Oct4_vs_Sox2_motif_set.tab2022-12-20 07:49 268  
[TXT]PHO_up800-noorf.fasta2022-12-20 07:49 15K 
[ ]Ppersica_Varieties.chr1.vcf.gz2022-12-20 07:50 60M 
[ ]Prunus_persica.Prunus_persica_NCBIv2.38_upstream.chr1.fasta.gz2022-12-20 07:50 5.9M 
[ ]RSAT_peak-motifs_Oct4_matrices.tf2022-12-20 07:50 19K 
[TXT]SWEMBL_mmus_CEBPA_vs_mmus_Input_peaks_R0.12_nof.bed2022-12-20 07:50 47K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof.bed.gz2022-12-20 07:50 87K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof.fasta.gz2022-12-20 07:50 309K 
[ ]SWEMBL_mmus_HNF4A_vs_mmus_Input_peaks_R0.05_nof_200bp.fasta.gz2022-12-20 07:50 250K 
[ ]Scer_biocyc.tab2022-12-20 07:50 74K 
[TXT]Sox2_peaks.fasta2022-12-20 07:50 3.9M 
[TXT]TFs_short.txt2022-12-20 07:50 37  
[ ]XYgraph_demo_data.ft2022-12-20 07:50 1.9K 
[ ]all_human_ENCODE_DNAse_mk1_bg.ol2022-12-20 07:49 2.3K 
[ ]allup500_Saccharomyces_cerevisiae_some_pattern_counts.tab2022-12-20 07:49 132K 
[ ]brachypodium_diastichon_branched_aa_pathway_GO-0009081_genes.tab2022-12-20 07:49 4.1K 
[ ]compare-matrices_demo.tf2022-12-20 07:49 5.1K 
[IMG]convert-features_demo.pat2022-12-20 07:49 1.4K 
[TXT]convert-matrix_demo_data.txt2022-12-20 07:49 1.0K 
[ ]cytomod_matrices.meme2022-12-20 07:49 6.0K 
[ ]dna-pattern_demo_seq.fa2022-12-20 07:49 4.2K 
[ ]do798+do735_mmus_hnf6_liver.transfac2022-12-20 07:49 17K 
[ ]drosophila_eve_segmentation_sites.ft2022-12-20 07:49 5.3K 
[ ]dyad_analysis_demo_seq.fa2022-12-20 07:49 5.1K 
[TXT]enhancers_short.bed2022-12-20 07:49 1.1K 
[ ]feature-map_demo_data.ft2022-12-20 07:49 11K 
[TXT]fetch-sequences_Schmidt_2011_mm9_CEBPA_SWEMBL_R0.12_702peaks.bed2022-12-20 07:49 47K 
[ ]footprint-discovery_LexA_matrices.tf2022-12-20 07:49 61K 
[ ]footprint-discovery_selected_yeast_genes.tab2022-12-20 07:49 262  
[ ]gavin_mcl_clusters_inf2.1.tab2022-12-20 07:49 27K 
[ ]gavin_mcl_clusters_inf2.1_cc_mips_complexes_matrix.tab2022-12-20 07:49 119K 
[ ]info-gibbs_demo_seq.fa2022-12-20 07:49 4.4K 
[TXT]isRSNP_result.csv2022-12-20 07:49 1.8K 
[ ]jaspar_stat5ab_matrix.tf2022-12-20 07:49 1.1K 
[ ]krogan_2006_mcl_vs_mips_table.tab2022-12-20 07:49 944K 
[ ]local-word-analysis_demo_seq.fa2022-12-20 07:49 12K 
[DIR]matrices_from_kmers/2022-12-20 07:58 -  
[ ]matrix-clustering_demo_peak-motifs_matrix_descriptions.tab2022-12-20 07:49 2.8K 
[ ]matrix-clustering_demo_peak-motifs_pairwise_compa.tab2022-12-20 07:49 20K 
[ ]matrix-clustering_demo_peak-motifs_result.tf2022-12-20 07:49 12K 
[ ]matrix-scan-quick_demo_matrix.tf2022-12-20 07:49 885  
[ ]matrix-scan-quick_demo_seq.fa2022-12-20 07:49 5.5K 
[ ]matrix_quality_demo_matrix.tf2022-12-20 07:49 17K 
[ ]matrix_quality_demo_seq1.fa2022-12-20 07:49 8.0K 
[ ]matrix_quality_demo_seq2.fa2022-12-20 07:49 9.6K 
[ ]mcode.mde2022-12-20 07:49 680  
[ ]merged_Homer_MEME-ChIP_peak-motifs_Oct4_matrices.tf2022-12-20 07:49 51K 
[ ]mips_complexes.tab2022-12-20 07:49 47K 
[TXT]net_short.tsv2022-12-20 07:49 29  
[ ]oligo_analysis_demo_seq.fa2022-12-20 07:49 12K 
[ ]peak-motifs_GSM348066_limb_p300_1000peaks.fa2022-12-20 07:49 706K 
[ ]peak-motifs_GSM348066_limb_p300_2105peaks.fa2022-12-20 07:49 1.5M 
[ ]peak-motifs_GSM559652_heart_p300_1000peaks.fa2022-12-20 07:49 840K 
[ ]peak-motifs_GSM559652_heart_p300_3597peaks.fa2022-12-20 07:49 2.5M 
[ ]peak-motifs_Oct4_matrices.tf2022-12-20 07:49 23K 
[TXT]peak-motifs_Oct4_metric_ranges.txt2022-12-20 07:49 48  
[ ]peak-motifs_Sox2_matrices.tf2022-12-20 07:49 17K 
[ ]peak-motifs_Sox2_vs_Oct4_matrices.tf2022-12-20 07:49 11K 
[ ]peak-motifs_result_Chen_Oct4_matrices.tf2022-12-20 07:49 12K 
[ ]peak-motifs_result_Chen_Oct4_permuted_matrices.tf2022-12-20 07:49 23K 
[DIR]protein_interactions/2022-12-20 07:58 -  
[ ]rdm_test.tab2022-12-20 07:50 6.9K 
[TXT]repo_creation.md2022-12-20 07:50 1.3K 
[ ]roc-stats_demo_regulonDB_cg_stringcoex_inter-Q.tab2022-12-20 07:50 138K 
[TXT]seq_mm9_galaxy.bed2022-12-20 07:50 592  
[ ]seq_mm9_galaxy_matrix-scan.ft2022-12-20 07:50 347  
[ ]string_coexpression_mcl_clusters.tab2022-12-20 07:50 227K 
[ ]string_coexpression_top_edges.gml2022-12-20 07:50 681K 
[ ]string_yeast_gene_coexpression_names_gt_550.tab2022-12-20 07:50 83K 
[ ]test.tab2022-12-20 07:50 132K 
[TXT]test_yeast.bed2022-12-20 07:50 306  
[ ]variation-scan_results_WeireauchSNPs_vs_jaspar_core_vertebrates.tab2022-12-20 07:50 10K 
[ ]variation_demo_set.rsat-var2022-12-20 07:50 757  
[ ]variation_demo_set.varseq2022-12-20 07:50 3.9K 
[TXT]variation_demo_set.vcf2022-12-20 07:50 1.5K 
[ ]variation_demo_set_MWeirauch_cell_2013_15SNPs_TFs.tf2022-12-20 07:50 93K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.gvf2022-12-20 07:50 3.4K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.rsat-var2022-12-20 07:50 935  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.varBed2022-12-20 07:50 856  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs.varseq2022-12-20 07:50 3.3K 
[TXT]variation_demo_set_MWeirauch_cell_2014_15SNPs_IDs.txt2022-12-20 07:50 151  
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs_TFs.tf2022-12-20 07:50 68K 
[ ]variation_demo_set_MWeirauch_cell_2014_15SNPs_TFs_relfreq.tf2022-12-20 07:50 92K 
[TXT]variation_testfile.vcf2022-12-20 07:50 3.5K 
[ ]varscan_weirauch-snps_vs_JASPAR_pval0.001_pvalratio10.tab2022-12-20 07:50 10K 
[ ]yeast_string_database_graph_converted_weights.tab2022-12-20 07:50 304K 
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