; convert-variations -i $RSAT/public_html/tmp/amedina/2018/03/22/convert-variations_2018-03-22.173648_ut2UIGconvert-variations_input -from gvf -to varBed
TimeWarn: 2018-03-22.173648 Reading input file
; convert-variations -i /Users/amedina/local/rsat/public_html/tmp/amedina/2018/03/22/convert-variations_2018-03-22.173648_ut2UIGconvert-variations_input -from gvf -to varBed
; Phased False
; Homozygotes False
;
; column headers
; 1 chr variant chromosome
; 2 start variant reference start
; 3 end variant reference end
; 4 strand variant reference strand (+)
; 5 id variant identifier
; 6 ref reference allele
; 7 alt single or list of alt alleles
; 8 so_term single or list of variant types
; 9 validate validation status if provided
; 10 minor_allele_freq MAF if provided
#chr start end strand id ref alt so_term validate minor_allele_freq
11 69331641 69331642 + rs554219 C G SNV 1 0.114325
4 145488333 145488334 + rs1542725 C T SNV 1 0.294307
16 209708 209709 + SNP195 T C SNV 1 NA
17 69108654 69108655 + rs1859961 A G SNV 1 0.00367309
10 123333996 123333997 + rs7895676 C T SNV 1 0.376033
8 128413304 128413305 + rs6983267 G T SNV 1 0.436639
10 123340431 123340432 + rs35054928 C - deletion 1 0.485767
5 159894846 159894847 + rs57095329 A G SNV 1 0.117539
1 109817589 109817590 + rs12740374 G T SNV 1 0.18641
8 128531688 128531689 + rs11986220 A T SNV 1 0.103765
10 123340310 123340311 + rs2981578 C T SNV 1 0.37787
11 69379160 69379161 + rs75915166 C A SNV 1 0.0284665
11 69234619 69234620 + rs7948643 T C SNV 1 0.203857
17 69107815 69107816 + rs8072254 A G SNV 1 0.353076
16 52599187 52599188 + rs4784227 C T SNV 1 0.21809
; Host name Alejandras-Mac-Pro.local
; Job started 2018-03-22.173648
; Job done 2018-03-22.173648
; Seconds 0.27
; user 0.27
; system 0.03
; cuser 0
; csystem 0