1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 1/regulon1.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o 1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab
 Program version       	1.118
 Slow mode 
 Input files
	file2 	$RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf
	file1 	1/regulon1.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf
 Output files
	alignments_1ton	1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.tab
	match_table_txt	1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab
	html_index   	1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_index.html
	alignments_1ton_html	1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.html
	match_table_html	1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.html
	prefix       	1/regulon1.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB
 Matrices
	file1	10 matrices	1/regulon1.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf
		file1	1	11	217	wtATAAAAGww
		file1	2	12	188	dhaTAAAACcmw
		file1	3	12	244	whATAAAAAGdw
		file1	4	13	211	awwTAAAAAAGww
		file1	5	10	162	wwATTTATwt
		file1	6	14	117	ctCCGTCcmAAAaw
		file1	7	28	279	atATgyykwArrmrrdwmwwdwaAAAww
		file1	8	26	171	rmAACckywyrrmrgdhwhrwccTwy
		file1	9	25	155	swcCCkyycyrrmvsdmwykccchv
		file1	10	26	262	wwatAyykwhrrmrrwwmhdwctahw
	file2	1054 matrices	$RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf
		file2		1		16		5		TCATTCCACGTAGATr
		file2		2		8		5		awmAGTTr
		file2		3		8		3		rkTAGTTr
		file2		4		8		5		wamaGTTr
		file2		5		8		1		GTTAGTTA
		file2		6		8		2		kwCwGTTr
		file2		7		8		2		GTTAGTTr
		file2		8		8		6		wwmaGTTr
		file2		9		8		2		rsTkGTTr
		file2		10		8		8		RkTwGKTr
		file2		11		8		1		TACTGTTG
		...	1044 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
oligos_5-7nt_m1 TATA_BINDING_TBP_1vtl_E_3D-footprint oligos_5-7nt_m1 TATA_BINDING_TBP_1vtl_E_3D-footprint 0.923 0.671 6.514 0.640 0.957 0.6848 0.92686 11 8 8 11 0.7273 0.7273 1.0000 D 1 .tATAAAAG.. TATAAaAG 9 5 2 3 1 16 10 6.5714 1
oligos_5-7nt_m1 Dof3_MA0021.1_JASPAR oligos_5-7nt_m1 Dof3_MA0021.1_JASPAR 0.948 0.517 4.334 0.534 0.967 0.3939 0.92603 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....AAAGww AAAGyv 3 66 29 30 5 3 3 19.8571 2
oligos_5-7nt_m4 CDF2_MA0973.1_JASPAR oligos_5-7nt_m4 CDF2_MA0973.1_JASPAR 0.884 0.568 4.614 0.564 0.951 0.8735 0.92657 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww maWAAAGyr. 28 32 21 15 2 29 18 20.7143 3
oligos_5-7nt_m4 CDF2_M0653_1.02_CISBP oligos_5-7nt_m4 CDF2_M0653_1.02_CISBP 0.883 0.568 4.629 0.563 0.951 0.8788 0.92635 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww maWAAAGyr. 29 33 20 17 3 30 19 21.5714 4
oligos_5-7nt_m1 Dof2_MA0020.1_JASPAR oligos_5-7nt_m1 Dof2_MA0020.1_JASPAR 0.946 0.516 4.331 0.519 0.966 0.4080 0.92473 11 6 6 11 0.5455 0.5455 1.0000 D 5 .....AAAGww AAAGcm 4 67 30 36 8 4 4 21.8571 5
oligos_5-7nt_m3 Dof_M01136_TRANSFAC oligos_5-7nt_m3 Dof_M01136_TRANSFAC 0.845 0.650 5.192 0.625 0.937 1.2615 0.92058 12 11 10 13 0.7692 0.8333 0.9091 D 2 ..ATAAAAAGdw amaaAAAGwa. 38 10 8 5 15 44 35 22.1429 6
oligos_5-7nt_m3 cdf3_M0651_1.02_CISBP oligos_5-7nt_m3 cdf3_M0651_1.02_CISBP 0.889 0.547 4.141 0.535 0.955 0.7135 0.92534 12 9 8 13 0.6154 0.6667 0.8889 D 4 ....AAAAAGdw awAAAGyg. 21 43 35 26 6 18 11 22.8571 7
oligos_5-7nt_m3 CDF3_MA0974.1_JASPAR oligos_5-7nt_m3 CDF3_MA0974.1_JASPAR 0.887 0.546 4.097 0.534 0.955 0.7240 0.92479 12 9 8 13 0.6154 0.6667 0.8889 D 4 ....AAAAAGdw awAAAGyg. 24 45 37 29 7 19 12 24.7143 8
oligos_5-7nt_m3 DOF2.5_MA0977.1_JASPAR oligos_5-7nt_m3 DOF2.5_MA0977.1_JASPAR 0.868 0.579 4.337 0.576 0.943 0.9114 0.91562 12 8 8 12 0.6667 0.6667 1.0000 D 4 ....AAAAAGdw AwAARGTg 34 26 28 11 25 35 29 26.8571 9
oligos_5-7nt_m5 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnb_B_3D-footprint oligos_5-7nt_m5 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnb_B_3D-footprint 0.865 0.692 8.530 0.665 0.924 1.2231 0.90225 10 8 8 10 0.8000 0.8000 1.0000 D 1 .wATTTATw. cAtTTATA 35 4 1 2 65 42 46 27.8571 10
oligos_5-7nt_m4 DOF2.5_MA0977.1_JASPAR oligos_5-7nt_m4 DOF2.5_MA0977.1_JASPAR 0.871 0.536 4.857 0.542 0.943 0.9114 0.91562 13 8 8 13 0.6154 0.6154 1.0000 D 5 .....AAAAAGww AwAARGTg 33 52 13 23 24 34 28 29.5714 11
oligos_5-7nt_m4 cdf3_M0651_1.02_CISBP oligos_5-7nt_m4 cdf3_M0651_1.02_CISBP 0.888 0.507 4.571 0.505 0.953 0.7446 0.92373 13 9 8 14 0.5714 0.6154 0.8889 D 5 .....AAAAAGww awAAAGyg. 22 81 22 44 10 21 13 30.4286 12
oligos_5-7nt_m3 CDF2_M0653_1.02_CISBP oligos_5-7nt_m3 CDF2_M0653_1.02_CISBP 0.835 0.578 4.149 0.574 0.934 1.1873 0.91439 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw maWAAAGyr. 41 27 34 12 26 40 38 31.1429 13
oligos_5-7nt_m4 CDF3_MA0974.1_JASPAR oligos_5-7nt_m4 CDF3_MA0974.1_JASPAR 0.887 0.507 4.549 0.504 0.953 0.7493 0.92349 13 9 8 14 0.5714 0.6154 0.8889 D 5 .....AAAAAGww awAAAGyg. 23 83 23 45 11 22 15 31.7143 14
oligos_5-7nt_m3 Dof3_MA0021.1_JASPAR oligos_5-7nt_m3 Dof3_MA0021.1_JASPAR 0.932 0.466 4.536 0.484 0.961 0.4694 0.91926 12 6 6 12 0.5000 0.5000 1.0000 D 6 ......AAAGdw AAAGyv 6 103 24 59 20 6 6 32.0000 15
oligos_5-7nt_m4 Dof_M01136_TRANSFAC oligos_5-7nt_m4 Dof_M01136_TRANSFAC 0.820 0.586 5.618 0.579 0.925 1.5047 0.91326 13 11 10 14 0.7143 0.7692 0.9091 D 3 ...TAAAAAAGww amaaAAAGwa. 47 24 3 10 29 67 45 32.1429 16
oligos_5-7nt_m1 PBF_M00355_TRANSFAC oligos_5-7nt_m1 PBF_M00355_TRANSFAC 0.799 0.666 4.773 0.630 0.925 1.4993 0.91342 11 11 10 12 0.8333 0.9091 0.9091 D 1 .tATAAAAGww wwdwAAAGhg. 63 6 17 4 28 65 44 32.4286 17
dyads_test_vs_ctrl_m1 ORA47_M0014_1.02_CISBP dyads_test_vs_ctrl_m1 ORA47_M0014_1.02_CISBP 0.835 0.537 2.723 0.537 0.951 0.8857 0.92606 14 9 9 14 0.6429 0.6429 1.0000 D 0 ctCCGTCcm..... yrCCGwCca 40 51 56 24 4 32 20 32.4286 18
oligos_5-7nt_m3 CDF2_MA0973.1_JASPAR oligos_5-7nt_m3 CDF2_MA0973.1_JASPAR 0.832 0.576 4.135 0.573 0.933 1.2074 0.91367 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw maWAAAGyr. 43 29 36 13 27 41 39 32.5714 19
oligos_5-7nt_m4 Dof2_MA0020.1_JASPAR oligos_5-7nt_m4 Dof2_MA0020.1_JASPAR 0.936 0.432 4.965 0.438 0.964 0.4275 0.92294 13 6 6 13 0.4615 0.4615 1.0000 D 7 .......AAAGww AAAGcm 5 115 10 78 13 5 5 33.0000 20
oligos_5-7nt_m1 PBF_MA0064.1_JASPAR oligos_5-7nt_m1 PBF_MA0064.1_JASPAR 0.965 0.439 4.331 0.442 0.970 0.2960 0.92305 11 5 5 11 0.4545 0.4545 1.0000 D 5 .....AAAGw. AAAGy 1 113 32 76 12 1 1 33.7143 21
oligos_5-7nt_m3 Dof2_MA0020.1_JASPAR oligos_5-7nt_m3 Dof2_MA0020.1_JASPAR 0.931 0.465 4.534 0.470 0.960 0.4783 0.91849 12 6 6 12 0.5000 0.5000 1.0000 D 6 ......AAAGdw AAAGcm 7 104 25 64 22 8 8 34.0000 22
oligos_5-7nt_m1 MNB1A_MA0053.1_JASPAR oligos_5-7nt_m1 MNB1A_MA0053.1_JASPAR 0.963 0.438 4.331 0.440 0.969 0.3106 0.92119 11 5 5 11 0.4545 0.4545 1.0000 D 5 .....AAAGw. AAAGc 2 114 31 77 14 2 2 34.5714 23
oligos_5-7nt_m4 Dof3_MA0021.1_JASPAR oligos_5-7nt_m4 Dof3_MA0021.1_JASPAR 0.926 0.428 4.970 0.449 0.960 0.4780 0.91852 13 6 6 13 0.4615 0.4615 1.0000 D 7 .......AAAGww AAAGyv 8 118 9 74 21 7 7 34.8571 24
oligos_5-7nt_m3 PBF_M01130_TRANSFAC oligos_5-7nt_m3 PBF_M01130_TRANSFAC 0.908 0.454 4.765 0.448 0.950 0.5987 0.90881 12 6 6 12 0.5000 0.5000 1.0000 D 5 .....AAAAGd. wAAAGg 15 111 18 75 34 12 21 40.8571 25
oligos_5-7nt_m4 PHYPADRAFT_153324_MA0989.1_JASPAR oligos_5-7nt_m4 PHYPADRAFT_153324_MA0989.1_JASPAR 0.812 0.562 2.788 0.548 0.923 1.3890 0.90740 13 9 9 13 0.6923 0.6923 1.0000 D 4 ....AAAAAAGww vrwAAaGyd 48 37 52 21 35 50 47 41.4286 26
oligos_5-7nt_m4 e_gw1.392.16.1_M0660_1.02_CISBP oligos_5-7nt_m4 e_gw1.392.16.1_M0660_1.02_CISBP 0.811 0.562 2.812 0.547 0.923 1.3942 0.90723 13 9 9 13 0.6923 0.6923 1.0000 D 4 ....AAAAAAGww vrwAAaGyd 50 39 51 22 36 51 48 42.4286 27
oligos_5-7nt_m1 _TATA_BINDING_TBP_1vol_AB_3D-footprint oligos_5-7nt_m1 _TATA_BINDING_TBP_1vol_AB_3D-footprint 0.912 0.663 1.106 -0.047 0.949 0.8183 0.92005 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAAAAG 10 7 111 112 16 23 22 43.0000 28
oligos_5-7nt_m1 _TATA_BINDING_TBP_1cdw_A_3D-footprint oligos_5-7nt_m1 _TATA_BINDING_TBP_1cdw_A_3D-footprint 0.909 0.661 1.171 -0.030 0.948 0.8291 0.91952 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAAAAG 12 8 109 110 18 25 24 43.7143 29
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint 0.909 0.661 1.171 -0.030 0.948 0.8317 0.91939 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAAAAG 13 9 108 111 19 26 25 44.4286 30
oligos_5-7nt_m4 PBF_M01130_TRANSFAC oligos_5-7nt_m4 PBF_M01130_TRANSFAC 0.901 0.416 5.223 0.414 0.946 0.6457 0.90530 13 6 6 13 0.4615 0.4615 1.0000 D 6 ......AAAAGw. wAAAGg 17 123 7 84 44 13 26 44.8571 31
oligos_5-7nt_m1 PBF_M01130_TRANSFAC oligos_5-7nt_m1 PBF_M01130_TRANSFAC 0.886 0.483 4.678 0.469 0.939 0.7351 0.89896 11 6 6 11 0.5455 0.5455 1.0000 D 4 ....AAAAGw. wAAAGg 25 93 19 65 70 20 31 46.1429 32
oligos_5-7nt_m3 ATGRP2B_M0583_1.02_CISBP oligos_5-7nt_m3 ATGRP2B_M0583_1.02_CISBP 0.897 0.598 1.979 -0.014 0.938 0.9969 0.91175 12 8 8 12 0.6667 0.6667 1.0000 R 1 .hATAAAAA... AAWAAAAM 19 20 83 107 32 36 34 47.2857 33
oligos_5-7nt_m3 PHYPADRAFT_153324_MA0989.1_JASPAR oligos_5-7nt_m3 PHYPADRAFT_153324_MA0989.1_JASPAR 0.787 0.590 2.422 0.565 0.919 1.4610 0.90503 12 9 9 12 0.7500 0.7500 1.0000 D 3 ...TAAAAAGdw vrwAAaGyd 79 21 63 14 46 58 51 47.4286 34
oligos_5-7nt_m3 e_gw1.392.16.1_M0660_1.02_CISBP oligos_5-7nt_m3 e_gw1.392.16.1_M0660_1.02_CISBP 0.783 0.587 2.436 0.563 0.918 1.4796 0.90443 12 9 9 12 0.7500 0.7500 1.0000 D 3 ...TAAAAAGdw vrwAAaGyd 81 22 62 18 52 62 54 50.1429 35
oligos_5-7nt_m3 ATDOF2.4_M0648_1.02_CISBP oligos_5-7nt_m3 ATDOF2.4_M0648_1.02_CISBP 0.875 0.510 1.772 0.499 0.938 0.8636 0.90613 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....AAAAAGd. awAAaGt 31 78 95 50 39 27 32 50.2857 36
oligos_5-7nt_m1 Dof1_M00352_TRANSFAC oligos_5-7nt_m1 Dof1_M00352_TRANSFAC 0.762 0.635 4.791 0.595 0.911 1.7708 0.90590 11 11 10 12 0.8333 0.9091 0.9091 D 1 .tATAAAAGww aaywAAAGmh. 112 12 15 6 40 100 68 50.4286 37
oligos_5-7nt_m3 DOF2.4_MA0982.1_JASPAR oligos_5-7nt_m3 DOF2.4_MA0982.1_JASPAR 0.873 0.509 1.779 0.498 0.938 0.8700 0.90578 12 7 7 12 0.5833 0.5833 1.0000 D 4 ....AAAAAGd. awAAmGt 32 79 94 51 41 28 33 51.1429 38
oligos_5-7nt_m5 PDF2_M01194_TRANSFAC oligos_5-7nt_m5 PDF2_M01194_TRANSFAC 0.807 0.734 4.810 0.276 0.913 1.7318 0.90695 10 11 10 11 0.9091 1.0000 0.9091 R 0 wwATTTATwt GCATTTAWKS. 57 2 14 88 37 96 67 51.5714 39
oligos_5-7nt_m4 PHYPADRAFT_38837_MA1022.1_JASPAR oligos_5-7nt_m4 PHYPADRAFT_38837_MA1022.1_JASPAR 0.812 0.522 2.274 0.512 0.920 1.4396 0.90573 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww vrwAAaGyd. 49 62 68 39 42 54 49 51.8571 40
oligos_5-7nt_m5 AHL25_AHL25_3_ArabidopsisPBM oligos_5-7nt_m5 AHL25_AHL25_3_ArabidopsisPBM 0.774 0.774 4.197 0.765 0.908 1.8386 0.90412 10 10 10 10 1.0000 1.0000 1.0000 D 0 wwATTTATwt waWwWwAwTw 96 1 33 1 53 104 76 52.0000 41
oligos_5-7nt_m4 gw1.385.26.1_M0663_1.02_CISBP oligos_5-7nt_m4 gw1.385.26.1_M0663_1.02_CISBP 0.810 0.520 2.295 0.511 0.919 1.4494 0.90541 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww vrwAAaGyd. 54 65 67 41 43 56 50 53.7143 42
dyads_test_vs_ctrl_m1 AY750993_VRN1_EEADannot dyads_test_vs_ctrl_m1 AY750993_VRN1_EEADannot 0.834 0.417 2.179 0.404 0.949 0.8238 0.91978 14 10 8 16 0.5000 0.5714 0.8000 D 6 ......CcmAAAaw CCarAAAw.. 42 121 71 85 17 24 23 54.7143 43
oligos_5-7nt_m4 ATDOF2.4_M0648_1.02_CISBP oligos_5-7nt_m4 ATDOF2.4_M0648_1.02_CISBP 0.885 0.477 1.922 0.471 0.937 0.8850 0.90497 13 7 7 13 0.5385 0.5385 1.0000 D 5 .....AAAAAGw. awAAaGt 27 97 88 62 47 31 36 55.4286 44
oligos_5-7nt_m3 PHYPADRAFT_38837_MA1022.1_JASPAR oligos_5-7nt_m3 PHYPADRAFT_38837_MA1022.1_JASPAR 0.789 0.546 1.974 0.526 0.918 1.4761 0.90455 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw vrwAAaGyd. 75 44 84 32 49 60 52 56.5714 45
oligos_5-7nt_m1 Dof2_M00353_TRANSFAC oligos_5-7nt_m1 Dof2_M00353_TRANSFAC 0.751 0.626 4.461 0.582 0.910 1.8034 0.90504 11 11 10 12 0.8333 0.9091 0.9091 D 1 .tATAAAAGww mmwwAAAGcr. 125 14 26 9 45 103 74 56.5714 46
oligos_5-7nt_m3 SED_M01128_TRANSFAC oligos_5-7nt_m3 SED_M01128_TRANSFAC 0.910 0.425 0.230 -0.048 0.960 0.5635 0.92417 12 10 7 15 0.4667 0.5833 0.7000 R 5 .....AAAAGdw DAAAGBD... 11 119 126 113 9 10 9 56.7143 47
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint 0.863 0.628 1.168 -0.029 0.927 1.1633 0.90467 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. AATAAAAG 36 13 110 109 48 39 43 56.8571 48
oligos_5-7nt_m4 DOF2.4_MA0982.1_JASPAR oligos_5-7nt_m4 DOF2.4_MA0982.1_JASPAR 0.883 0.475 1.928 0.470 0.936 0.8932 0.90453 13 7 7 13 0.5385 0.5385 1.0000 D 5 .....AAAAAGw. awAAmGt 30 101 85 63 50 33 37 57.0000 49
oligos_5-7nt_m3 e_gw1.170.52.1_M0659_1.02_CISBP oligos_5-7nt_m3 e_gw1.170.52.1_M0659_1.02_CISBP 0.782 0.542 2.374 0.521 0.917 1.4949 0.90394 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw srwAAAGyd. 83 47 64 34 54 64 55 57.2857 50
oligos_5-7nt_m3 gw1.385.26.1_M0663_1.02_CISBP oligos_5-7nt_m3 gw1.385.26.1_M0663_1.02_CISBP 0.788 0.546 1.996 0.525 0.918 1.4792 0.90445 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw vrwAAaGyd. 78 46 82 33 51 61 53 57.7143 51
oligos_5-7nt_m3 DOF5.7_DOF5.7_ArabidopsisPBM oligos_5-7nt_m3 DOF5.7_DOF5.7_ArabidopsisPBM 0.811 0.463 2.560 0.461 0.930 1.1173 0.90657 12 10 8 14 0.5714 0.6667 0.8000 D 4 ....AAAAAGdw raAAArrk.. 52 106 60 71 38 38 41 58.0000 52
oligos_5-7nt_m5 ANL2_M0850_1.02_CISBP oligos_5-7nt_m5 ANL2_M0850_1.02_CISBP 0.793 0.721 5.372 0.403 0.907 1.8661 0.90341 10 11 10 11 0.9091 1.0000 0.9091 R 0 wwATTTATwt KCATTWATTA. 71 3 5 86 56 109 82 58.8571 53
oligos_5-7nt_m3 PHYPADRAFT_140773_MA0987.1_JASPAR oligos_5-7nt_m3 PHYPADRAFT_140773_MA0987.1_JASPAR 0.781 0.541 2.357 0.520 0.916 1.5033 0.90367 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw srwAAAGyd. 88 48 65 35 55 66 57 59.1429 54
oligos_5-7nt_m1 CDF3_MA0974.1_JASPAR oligos_5-7nt_m1 CDF3_MA0974.1_JASPAR 0.789 0.526 3.822 0.501 0.911 1.4198 0.89468 11 9 8 12 0.6667 0.7273 0.8889 D 3 ...TAAAAGww awAAAGyg. 73 57 40 48 83 52 69 60.2857 55
oligos_5-7nt_m1 SED_M01128_TRANSFAC oligos_5-7nt_m1 SED_M01128_TRANSFAC 0.891 0.446 0.323 -0.054 0.951 0.6793 0.91674 11 10 7 14 0.5000 0.6364 0.7000 R 4 ....AAAAGww DAAAGBD... 20 112 123 114 23 14 17 60.4286 56
oligos_5-7nt_m3 PBF_M01829_TRANSFAC oligos_5-7nt_m3 PBF_M01829_TRANSFAC 0.908 0.454 0.280 -0.114 0.953 0.5602 0.91180 12 6 6 12 0.5000 0.5000 1.0000 R 5 .....AAAAGd. WAAAGK 14 110 125 121 31 9 14 60.5714 57
oligos_5-7nt_m3 PBF_M00355_TRANSFAC oligos_5-7nt_m3 PBF_M00355_TRANSFAC 0.761 0.586 4.909 0.563 0.905 1.9031 0.90245 12 11 10 13 0.7692 0.8333 0.9091 D 2 ..ATAAAAAGdw wwdwAAAGhg. 114 23 12 16 63 112 85 60.7143 58
oligos_5-7nt_m1 cdf3_M0651_1.02_CISBP oligos_5-7nt_m1 cdf3_M0651_1.02_CISBP 0.789 0.526 3.821 0.501 0.911 1.4209 0.89464 11 9 8 12 0.6667 0.7273 0.8889 D 3 ...TAAAAGww awAAAGyg. 74 58 41 49 84 53 70 61.2857 59
oligos_5-7nt_m1 e_gw1.392.16.1_M0660_1.02_CISBP oligos_5-7nt_m1 e_gw1.392.16.1_M0660_1.02_CISBP 0.759 0.621 2.212 0.583 0.910 1.6181 0.90006 11 9 9 11 0.8182 0.8182 1.0000 D 2 ..ATAAAAGww vrwAAaGyd 116 15 69 8 68 83 71 61.4286 60
oligos_5-7nt_m1 PHYPADRAFT_153324_MA0989.1_JASPAR oligos_5-7nt_m1 PHYPADRAFT_153324_MA0989.1_JASPAR 0.758 0.620 2.193 0.583 0.910 1.6218 0.89994 11 9 9 11 0.8182 0.8182 1.0000 D 2 ..ATAAAAGww vrwAAaGyd 117 16 70 7 69 84 73 62.2857 61
oligos_5-7nt_m1 CDF2_MA0973.1_JASPAR oligos_5-7nt_m1 CDF2_MA0973.1_JASPAR 0.767 0.575 3.899 0.559 0.907 1.6653 0.89861 11 10 9 12 0.7500 0.8182 0.9000 D 2 ..ATAAAAGww maWAAAGyr. 108 30 39 19 73 89 79 62.4286 62
oligos_5-7nt_m4 DOF1.8_MA0981.1_JASPAR oligos_5-7nt_m4 DOF1.8_MA0981.1_JASPAR 0.800 0.515 2.129 0.505 0.916 1.5196 0.90315 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww vawAAaGtd. 59 69 73 43 60 71 62 62.4286 63
oligos_5-7nt_m4 PBF_M01829_TRANSFAC oligos_5-7nt_m4 PBF_M01829_TRANSFAC 0.907 0.419 0.341 -0.109 0.952 0.5725 0.91083 13 6 6 13 0.4615 0.4615 1.0000 R 6 ......AAAAGw. WAAAGK 16 120 122 120 33 11 16 62.5714 64
oligos_5-7nt_m4 e_gw1.170.52.1_M0659_1.02_CISBP oligos_5-7nt_m4 e_gw1.170.52.1_M0659_1.02_CISBP 0.794 0.510 2.616 0.498 0.916 1.5116 0.90340 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww srwAAAGyd. 68 77 58 52 57 69 59 62.8571 65
oligos_5-7nt_m4 PHYPADRAFT_140773_MA0987.1_JASPAR oligos_5-7nt_m4 PHYPADRAFT_140773_MA0987.1_JASPAR 0.794 0.510 2.596 0.498 0.916 1.5119 0.90339 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww srwAAAGyd. 67 76 59 53 59 70 60 63.4286 66
oligos_5-7nt_m1 CDF2_M0653_1.02_CISBP oligos_5-7nt_m1 CDF2_M0653_1.02_CISBP 0.766 0.574 3.908 0.558 0.907 1.6749 0.89832 11 10 9 12 0.7500 0.8182 0.9000 D 2 ..ATAAAAGww maWAAAGyr. 109 31 38 20 75 91 81 63.5714 67
oligos_5-7nt_m4 AT1G64620_M0647_1.02_CISBP oligos_5-7nt_m4 AT1G64620_M0647_1.02_CISBP 0.799 0.514 2.134 0.503 0.915 1.5279 0.90288 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww vrwAAaGtd. 62 71 72 46 61 74 63 64.1429 68
oligos_5-7nt_m1 DOF5.7_MA0984.1_JASPAR oligos_5-7nt_m1 DOF5.7_MA0984.1_JASPAR 0.803 0.468 2.305 0.463 0.928 1.0148 0.89824 11 8 7 12 0.5833 0.6364 0.8750 D 4 ....AAAAGww aAAArrg. 58 102 66 69 76 37 42 64.2857 69
oligos_5-7nt_m4 DAG2_DAG2_ArabidopsisPBM oligos_5-7nt_m4 DAG2_DAG2_ArabidopsisPBM 0.783 0.503 4.911 0.508 0.907 1.6691 0.89849 13 10 9 14 0.6429 0.6923 0.9000 D 4 ....AAAAAAGww sAwAARGTg. 82 84 11 42 74 90 80 66.1429 70
oligos_5-7nt_m4 DOF5.6_MA0983.1_JASPAR oligos_5-7nt_m4 DOF5.6_MA0983.1_JASPAR 0.799 0.492 3.128 0.475 0.910 1.4400 0.89393 13 8 8 13 0.6154 0.6154 1.0000 D 4 ....AAAAAAGw. vawAAmGt 61 89 43 60 85 55 72 66.4286 71
oligos_5-7nt_m4 ATGRP2B_M0583_1.02_CISBP oligos_5-7nt_m4 ATGRP2B_M0583_1.02_CISBP 0.861 0.530 1.720 -0.000 0.917 1.3312 0.89802 13 8 8 13 0.6154 0.6154 1.0000 R 1 .wwTAAAAA.... AAWAAAAM 37 54 98 103 77 45 56 67.1429 72
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn6_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn6_B_3D-footprint 0.837 0.609 0.857 -0.095 0.916 1.3418 0.89761 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAATAG 39 18 115 119 79 46 58 67.7143 73
oligos_5-7nt_m3 DOF1.8_MA0981.1_JASPAR oligos_5-7nt_m3 DOF1.8_MA0981.1_JASPAR 0.779 0.539 1.856 0.519 0.914 1.5439 0.90238 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw vawAAaGtd. 91 49 90 37 64 79 64 67.7143 74
oligos_5-7nt_m4 DOF5.6_M0657_1.02_CISBP oligos_5-7nt_m4 DOF5.6_M0657_1.02_CISBP 0.795 0.489 3.163 0.473 0.909 1.4609 0.89317 13 8 8 13 0.6154 0.6154 1.0000 D 4 ....AAAAAAGw. vawAAmGy 66 91 42 61 86 57 75 68.2857 75
oligos_5-7nt_m4 HMGIY_M01800_TRANSFAC oligos_5-7nt_m4 HMGIY_M01800_TRANSFAC 0.899 0.415 1.020 -0.121 0.943 0.6825 0.90264 13 6 6 13 0.4615 0.4615 1.0000 R 4 ....AAAAAA... AAAWWW 18 124 112 122 62 15 27 68.5714 76
oligos_5-7nt_m3 AT1G64620_M0647_1.02_CISBP oligos_5-7nt_m3 AT1G64620_M0647_1.02_CISBP 0.776 0.537 1.857 0.517 0.913 1.5577 0.90194 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw vrwAAaGtd. 92 50 89 38 66 80 66 68.7143 77
oligos_5-7nt_m1 PBF_M01829_TRANSFAC oligos_5-7nt_m1 PBF_M01829_TRANSFAC 0.885 0.483 0.310 -0.123 0.941 0.7029 0.90119 11 6 6 11 0.5455 0.5455 1.0000 R 4 ....AAAAGw. WAAAGK 26 94 124 123 67 17 30 68.7143 78
oligos_5-7nt_m3 DAG2_DAG2_ArabidopsisPBM oligos_5-7nt_m3 DAG2_DAG2_ArabidopsisPBM 0.766 0.530 4.370 0.528 0.903 1.7549 0.89592 12 10 9 13 0.6923 0.7500 0.9000 D 3 ...TAAAAAGdw sAwAARGTg. 110 53 27 31 82 98 89 70.0000 79
oligos_5-7nt_m3 DOF5.7_MA0984.1_JASPAR oligos_5-7nt_m3 DOF5.7_MA0984.1_JASPAR 0.761 0.507 2.762 0.502 0.914 1.3797 0.89618 12 8 8 12 0.6667 0.6667 1.0000 D 4 ....AAAAAGdw aAAArrgg 115 82 55 47 81 49 65 70.5714 80
dyads_test_vs_ctrl_m1 RIN_M01892_TRANSFAC dyads_test_vs_ctrl_m1 RIN_M01892_TRANSFAC 0.811 0.456 0.606 -0.087 0.931 1.2452 0.91233 14 11 9 16 0.5625 0.6429 0.8182 R 5 .....TCcmAAAaw YCWWWAAWW.. 51 107 117 118 30 43 40 72.2857 81
oligos_5-7nt_m1 PHYPADRAFT_38837_MA1022.1_JASPAR oligos_5-7nt_m1 PHYPADRAFT_38837_MA1022.1_JASPAR 0.753 0.565 1.811 0.536 0.907 1.6652 0.89861 11 10 9 12 0.7500 0.8182 0.9000 D 2 ..ATAAAAGww vrwAAaGyd. 121 34 92 25 72 88 78 72.8571 82
oligos_5-7nt_m1 gw1.385.26.1_M0663_1.02_CISBP oligos_5-7nt_m1 gw1.385.26.1_M0663_1.02_CISBP 0.753 0.565 1.818 0.535 0.907 1.6652 0.89862 11 10 9 12 0.7500 0.8182 0.9000 D 2 ..ATAAAAGww vrwAAaGyd. 122 35 91 27 71 87 77 72.8571 83
oligos_5-7nt_m3 DOF5.6_MA0983.1_JASPAR oligos_5-7nt_m3 DOF5.6_MA0983.1_JASPAR 0.773 0.515 2.788 0.489 0.905 1.5257 0.89082 12 8 8 12 0.6667 0.6667 1.0000 D 3 ...TAAAAAGd. vawAAmGt 100 68 53 57 87 72 86 74.7143 84
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint 0.798 0.580 2.700 0.135 0.893 1.7192 0.88411 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TTTAAAAG 64 25 57 92 95 95 97 75.0000 85
oligos_5-7nt_m3 DOF5.6_M0657_1.02_CISBP oligos_5-7nt_m3 DOF5.6_M0657_1.02_CISBP 0.771 0.514 2.830 0.488 0.904 1.5354 0.89048 12 8 8 12 0.6667 0.6667 1.0000 D 3 ...TAAAAAGd. vawAAmGy 102 70 50 58 88 75 87 75.7143 86
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint 0.826 0.601 1.212 -0.023 0.904 1.5389 0.89035 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAAAAT 45 19 106 108 89 78 88 76.1429 87
oligos_5-7nt_m2 ATGRP2B_M0583_1.02_CISBP oligos_5-7nt_m2 ATGRP2B_M0583_1.02_CISBP 0.829 0.553 2.025 -0.003 0.899 1.6100 0.88785 12 8 8 12 0.6667 0.6667 1.0000 R 1 .haTAAAAC... AAWAAAAM 44 41 81 105 91 82 91 76.4286 88
oligos_5-7nt_m1 DOF1.8_MA0981.1_JASPAR oligos_5-7nt_m1 DOF1.8_MA0981.1_JASPAR 0.750 0.563 1.729 0.534 0.906 1.6884 0.89791 11 10 9 12 0.7500 0.8182 0.9000 D 2 ..ATAAAAGww vawAAaGtd. 126 36 97 28 78 93 84 77.4286 89
oligos_5-7nt_m4 DOF5.7_DOF5.7_ArabidopsisPBM oligos_5-7nt_m4 DOF5.7_DOF5.7_ArabidopsisPBM 0.781 0.416 2.490 0.416 0.916 1.3496 0.89732 13 10 8 15 0.5333 0.6154 0.8000 D 5 .....AAAAAGww raAAArrk.. 90 122 61 83 80 48 61 77.8571 90
oligos_5-7nt_m5 CCA1_MA0972.1_JASPAR oligos_5-7nt_m5 CCA1_MA0972.1_JASPAR 0.823 0.411 4.774 0.255 0.888 1.3474 0.86320 10 8 6 12 0.5000 0.6000 0.7500 R -2 wwATTT.... ..ATATTT 46 125 16 89 126 47 105 79.1429 91
oligos_5-7nt_m3 PEND_M02233_TRANSFAC oligos_5-7nt_m3 PEND_M02233_TRANSFAC 0.773 0.644 1.636 0.047 0.907 1.8663 0.90340 12 10 10 12 0.8333 0.8333 1.0000 R 1 .hATAAAAAGd. MATAAGAAGT 99 11 99 97 58 110 83 79.5714 92
oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint 0.793 0.529 3.012 0.132 0.885 1.8413 0.88006 12 8 8 12 0.6667 0.6667 1.0000 R 1 .hATAAAAA... TATAAAAT 70 55 45 93 100 105 107 82.1429 93
oligos_5-7nt_m4 DOF5.7_MA0984.1_JASPAR oligos_5-7nt_m4 DOF5.7_MA0984.1_JASPAR 0.774 0.476 2.876 0.455 0.900 1.5923 0.88846 13 8 8 13 0.6154 0.6154 1.0000 D 4 ....AAAAAAGw. aAAArrgg 97 100 49 73 90 81 90 82.8571 94
oligos_5-7nt_m4 e_gw1.149.93.1_M0658_1.02_CISBP oligos_5-7nt_m4 e_gw1.149.93.1_M0658_1.02_CISBP 0.809 0.498 1.179 0.490 0.895 1.6813 0.88539 13 8 8 13 0.6154 0.6154 1.0000 D 4 ....AAAAAAGw. vrwaAmGy 55 87 107 56 93 92 94 83.4286 95
oligos_5-7nt_m3 fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP oligos_5-7nt_m3 fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP 0.786 0.524 0.826 0.512 0.890 1.7650 0.88257 12 8 8 12 0.6667 0.6667 1.0000 D 3 ...TAAAAAGd. sawaamGt 80 61 116 40 97 99 103 85.1429 96
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn7_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn7_B_3D-footprint 0.773 0.562 3.085 0.165 0.881 1.8964 0.87828 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATATAAG 98 38 44 90 104 111 112 85.2857 97
oligos_5-7nt_m4 TATA_BINDING_TBP_1vtl_E_3D-footprint oligos_5-7nt_m4 TATA_BINDING_TBP_1vtl_E_3D-footprint 0.781 0.481 5.594 0.463 0.876 1.9768 0.87573 13 8 8 13 0.6154 0.6154 1.0000 D 3 ...TAAAAAAG.. TATAAaAG 89 95 4 70 113 117 117 86.4286 98
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn5_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn5_B_3D-footprint 0.793 0.577 0.491 -0.139 0.898 1.6253 0.88732 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAAGAG 69 28 119 125 92 85 92 87.1429 99
oligos_5-7nt_m4 TMO6_M0654_1.02_CISBP oligos_5-7nt_m4 TMO6_M0654_1.02_CISBP 0.800 0.431 2.086 0.419 0.892 1.5115 0.87581 13 7 7 13 0.5385 0.5385 1.0000 D 4 ....AAAAAAG.. vawAAmG 60 116 75 81 112 68 98 87.1429 100
oligos_5-7nt_m4 fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP oligos_5-7nt_m4 fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP 0.808 0.497 0.950 0.498 0.889 1.7749 0.88224 13 8 8 13 0.6154 0.6154 1.0000 D 4 ....AAAAAAGw. sawaamGt 56 88 114 54 98 101 104 87.8571 101
oligos_5-7nt_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint oligos_5-7nt_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint 0.792 0.528 2.098 0.013 0.885 1.8415 0.88005 12 8 8 12 0.6667 0.6667 1.0000 R 1 .haTAAAAC... TATAAAAT 72 56 74 99 101 106 108 88.0000 102
oligos_5-7nt_m1 ATDOF2.4_M0648_1.02_CISBP oligos_5-7nt_m1 ATDOF2.4_M0648_1.02_CISBP 0.772 0.492 1.581 0.467 0.895 1.4632 0.87781 11 7 7 11 0.6364 0.6364 1.0000 D 3 ...TAAAAGw. awAAaGt 101 90 102 67 105 59 93 88.1429 103
oligos_5-7nt_m3 _TATA_BINDING_TBP_1cdw_A_3D-footprint oligos_5-7nt_m3 _TATA_BINDING_TBP_1cdw_A_3D-footprint 0.781 0.521 2.984 0.124 0.879 1.9366 0.87700 12 8 8 12 0.6667 0.6667 1.0000 R 1 .hATAAAAA... TATAAAAG 84 63 47 94 106 113 113 88.5714 104
oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint 0.781 0.521 2.984 0.124 0.879 1.9371 0.87698 12 8 8 12 0.6667 0.6667 1.0000 R 1 .hATAAAAA... TATAAAAG 85 64 46 95 107 114 114 89.2857 105
oligos_5-7nt_m4 DOF5.3_MA1071.1_JASPAR oligos_5-7nt_m4 DOF5.3_MA1071.1_JASPAR 0.798 0.429 2.077 0.418 0.891 1.5257 0.87523 13 7 7 13 0.5385 0.5385 1.0000 D 4 ....AAAAAAG.. gawAAmG 65 117 76 82 114 73 99 89.4286 106
oligos_5-7nt_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint oligos_5-7nt_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint 0.789 0.526 2.071 0.008 0.884 1.8616 0.87940 12 8 8 12 0.6667 0.6667 1.0000 R 1 .haTAAAAC... TATAAAAG 76 59 77 102 102 107 109 90.2857 107
oligos_5-7nt_m1 DOF2.4_MA0982.1_JASPAR oligos_5-7nt_m1 DOF2.4_MA0982.1_JASPAR 0.768 0.489 1.587 0.464 0.894 1.4835 0.87696 11 7 7 11 0.6364 0.6364 1.0000 D 3 ...TAAAAGw. awAAmGt 105 92 101 68 108 63 95 90.2857 108
oligos_5-7nt_m3 e_gw1.149.93.1_M0658_1.02_CISBP oligos_5-7nt_m3 e_gw1.149.93.1_M0658_1.02_CISBP 0.770 0.513 1.012 0.498 0.891 1.7482 0.88313 12 8 8 12 0.6667 0.6667 1.0000 D 3 ...TAAAAAGd. vrwaAmGy 103 72 113 55 96 97 100 90.8571 109
oligos_5-7nt_m2 _TATA_BINDING_TBP_1cdw_A_3D-footprint oligos_5-7nt_m2 _TATA_BINDING_TBP_1cdw_A_3D-footprint 0.789 0.526 2.071 0.008 0.884 1.8619 0.87939 12 8 8 12 0.6667 0.6667 1.0000 R 1 .haTAAAAC... TATAAAAG 77 60 78 101 103 108 110 91.0000 110
oligos_5-7nt_m3 TMO6_M0654_1.02_CISBP oligos_5-7nt_m3 TMO6_M0654_1.02_CISBP 0.781 0.456 1.924 0.437 0.890 1.5362 0.87480 12 7 7 12 0.5833 0.5833 1.0000 D 3 ...TAAAAAG.. vawAAmG 87 109 86 79 115 76 101 93.2857 111
oligos_5-7nt_m3 DOF5.3_MA1071.1_JASPAR oligos_5-7nt_m3 DOF5.3_MA1071.1_JASPAR 0.781 0.456 1.922 0.437 0.890 1.5372 0.87476 12 7 7 12 0.5833 0.5833 1.0000 D 3 ...TAAAAAG.. gawAAmG 86 108 87 80 116 77 102 93.7143 112
oligos_5-7nt_m3 TATA_BINDING_TBP_1vtl_E_3D-footprint oligos_5-7nt_m3 TATA_BINDING_TBP_1vtl_E_3D-footprint 0.753 0.502 5.267 0.469 0.866 2.1427 0.87062 12 8 8 12 0.6667 0.6667 1.0000 D 1 .hATAAAAA... TATAAaAG 124 85 6 66 125 125 125 93.7143 113
oligos_5-7nt_m4 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint oligos_5-7nt_m4 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint 0.810 0.499 0.485 -0.201 0.894 1.6978 0.88483 13 8 8 13 0.6154 0.6154 1.0000 R 3 ...TAAAAAAG.. TACAAAAG 53 86 121 126 94 94 96 95.7143 114
oligos_5-7nt_m3 _TATA_BINDING_TBP_1vol_AB_3D-footprint oligos_5-7nt_m3 _TATA_BINDING_TBP_1vol_AB_3D-footprint 0.768 0.512 2.940 0.112 0.871 2.0720 0.87277 12 8 8 12 0.6667 0.6667 1.0000 R 1 .hATAAAAA... TATAAAAG 106 74 48 96 121 122 122 98.4286 115
oligos_5-7nt_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint oligos_5-7nt_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint 0.770 0.513 2.047 0.012 0.878 1.9478 0.87664 12 8 8 12 0.6667 0.6667 1.0000 R 1 .haTAAAAC... AATAAAAG 104 73 79 100 109 115 115 99.2857 116
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint 0.764 0.555 1.402 0.019 0.878 1.9539 0.87645 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TATAAACG 111 40 105 98 110 116 116 99.4286 117
oligos_5-7nt_m4 ADOF2_M0649_1.02_CISBP oligos_5-7nt_m4 ADOF2_M0649_1.02_CISBP 0.754 0.464 1.739 0.457 0.888 1.7998 0.88142 13 8 8 13 0.6154 0.6154 1.0000 D 4 ....AAAAAAGw. srwAAmGy 120 105 96 72 99 102 106 100.0000 118
oligos_5-7nt_m5 AHL12_AHL12_ArabidopsisPBM oligos_5-7nt_m5 AHL12_AHL12_ArabidopsisPBM 0.756 0.407 2.783 0.390 0.883 1.6386 0.87069 10 10 7 13 0.5385 0.7000 0.7000 R -3 wwATTTA... ...WWWWTTW 119 126 54 87 124 86 111 101.0000 119
oligos_5-7nt_m5 ATML1_M0852_1.02_CISBP oligos_5-7nt_m5 ATML1_M0852_1.02_CISBP 0.756 0.619 0.489 0.135 0.862 2.4806 0.87626 10 10 9 11 0.8182 0.9000 0.9000 R -1 wwATTTATw. .RYAWTWAWK 118 17 120 91 111 126 126 101.2857 120
oligos_5-7nt_m2 _TATA_BINDING_TBP_1vol_AB_3D-footprint oligos_5-7nt_m2 _TATA_BINDING_TBP_1vol_AB_3D-footprint 0.768 0.512 2.027 -0.004 0.871 2.0610 0.87311 12 8 8 12 0.6667 0.6667 1.0000 R 1 .haTAAAAC... TATAAAAG 107 75 80 106 118 119 119 103.4286 121
oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint 0.762 0.508 1.790 -0.001 0.873 2.0301 0.87406 12 8 8 12 0.6667 0.6667 1.0000 R 1 .hATAAAAA... AATAAAAG 113 80 93 104 117 118 118 106.1429 122
oligos_5-7nt_m4 _TATA_BINDING_TBP_1cdw_A_3D-footprint oligos_5-7nt_m4 _TATA_BINDING_TBP_1cdw_A_3D-footprint 0.774 0.476 1.550 -0.074 0.871 2.0709 0.87280 13 8 8 13 0.6154 0.6154 1.0000 R 3 ...TAAAAAAG.. TATAAAAG 94 98 103 115 119 120 120 109.8571 123
oligos_5-7nt_m4 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint oligos_5-7nt_m4 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint 0.774 0.476 1.545 -0.075 0.871 2.0709 0.87280 13 8 8 13 0.6154 0.6154 1.0000 R 3 ...TAAAAAAG.. TATAAAAG 94 98 104 116 119 120 120 110.1429 124
oligos_5-7nt_m4 _TATA_BINDING_TBP_1vol_AB_3D-footprint oligos_5-7nt_m4 _TATA_BINDING_TBP_1vol_AB_3D-footprint 0.775 0.477 1.594 -0.077 0.870 2.0812 0.87249 13 8 8 13 0.6154 0.6154 1.0000 R 3 ...TAAAAAAG.. TATAAAAG 93 96 100 117 122 123 123 110.5714 125
oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint oligos_5-7nt_m1 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint 0.753 0.548 0.594 -0.137 0.869 2.0974 0.87199 11 8 8 11 0.7273 0.7273 1.0000 R 1 .tATAAAAG.. TACAAAAG 123 42 118 124 123 124 124 111.1429 126 
 Host name	baobab.eead.csic.es
 Job started	2016-06-02.143842
 Job done	2016-06-02.144102
 Seconds	87.97
	user	87.97
	system	6.92
	cuser	34.44
;	csystem	8.72