Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m1_shift0 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift0.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m1; m=0 (reference); ncol1=11; shift=0; ncol=14; wtATAAAAGww---
; Alignment reference
a 79 47 149 0 216 182 176 209 7 61 75 0 0 0
c 36 40 19 2 0 12 10 4 20 49 32 0 0 0
g 38 40 24 1 0 9 11 0 187 44 53 0 0 0
t 64 90 25 214 1 14 20 4 3 63 57 0 0 0
|
TATA_BINDING_TBP_1vtl_E_3D-footprint_shift1 (TATA_BINDING_TBP_1vtl_E_3D-footprint) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TATA_BINDING_TBP_1vtl_E_3D-footprint_shift1.png) |
0.923 |
0.671 |
6.514 |
0.640 |
0.927 |
0.685 |
0.957 |
9 |
5 |
2 |
3 |
1 |
16 |
10 |
6.571 |
1 |
; oligos_5-7nt_m1 versus TATA_BINDING_TBP_1vtl_E_3D-footprint; m=1/34; ncol2=8; w=8; offset=1; strand=D; shift=1; score= 6.5714; -TATAAaAG-----
; cor=0.923; Ncor=0.671; logoDP=6.514; NIcor=0.640; NsEucl=0.927; SSD=0.685; NSW=0.957; rcor=9; rNcor=5; rlogoDP=2; rNIcor=3; rNsEucl=1; rSSD=16; rNSW=10; rank_mean=6.571; match_rank=1
a 0 0 96 0 96 72 60 96 12 0 0 0 0 0
c 0 0 0 0 0 12 12 0 12 0 0 0 0 0
g 0 0 0 0 0 12 12 0 72 0 0 0 0 0
t 0 96 0 96 0 0 12 0 0 0 0 0 0 0
|
Dof3_MA0021.1_JASPAR_shift5 (Dof3_MA0021.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof3_MA0021.1_JASPAR_shift5.png) |
0.948 |
0.517 |
4.334 |
0.534 |
0.926 |
0.394 |
0.967 |
3 |
66 |
29 |
30 |
5 |
3 |
3 |
19.857 |
2 |
; oligos_5-7nt_m1 versus Dof3_MA0021.1_JASPAR; m=2/34; ncol2=6; w=6; offset=5; strand=D; shift=5; score=19.8571; -----AAAGyv---
; cor=0.948; Ncor=0.517; logoDP=4.334; NIcor=0.534; NsEucl=0.926; SSD=0.394; NSW=0.967; rcor=3; rNcor=66; rlogoDP=29; rNIcor=30; rNsEucl=5; rSSD=3; rNSW=3; rank_mean=19.857; match_rank=2
a 0 0 0 0 0 21 21 21 0 0 6 0 0 0
c 0 0 0 0 0 0 0 0 0 10 6 0 0 0
g 0 0 0 0 0 0 0 0 21 3 9 0 0 0
t 0 0 0 0 0 0 0 0 0 8 0 0 0 0
|
Dof2_MA0020.1_JASPAR_shift5 (Dof2_MA0020.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof2_MA0020.1_JASPAR_shift5.png) |
0.946 |
0.516 |
4.331 |
0.519 |
0.925 |
0.408 |
0.966 |
4 |
67 |
30 |
36 |
8 |
4 |
4 |
21.857 |
5 |
; oligos_5-7nt_m1 versus Dof2_MA0020.1_JASPAR; m=3/34; ncol2=6; w=6; offset=5; strand=D; shift=5; score=21.8571; -----AAAGcm---
; cor=0.946; Ncor=0.516; logoDP=4.331; NIcor=0.519; NsEucl=0.925; SSD=0.408; NSW=0.966; rcor=4; rNcor=67; rlogoDP=30; rNIcor=36; rNsEucl=8; rSSD=4; rNSW=4; rank_mean=21.857; match_rank=5
a 0 0 0 0 0 21 21 21 0 3 7 0 0 0
c 0 0 0 0 0 0 0 0 0 14 6 0 0 0
g 0 0 0 0 0 0 0 0 21 2 3 0 0 0
t 0 0 0 0 0 0 0 0 0 2 5 0 0 0
|
PBF_M00355_TRANSFAC_shift1 (PBF_M00355_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M00355_TRANSFAC_shift1.png) |
0.799 |
0.666 |
4.773 |
0.630 |
0.913 |
1.499 |
0.925 |
63 |
6 |
17 |
4 |
28 |
65 |
44 |
32.429 |
17 |
; oligos_5-7nt_m1 versus PBF_M00355_TRANSFAC; m=4/34; ncol2=11; w=10; offset=1; strand=D; shift=1; score=32.4286; -wwdwAAAGhgm--
; cor=0.799; Ncor=0.666; logoDP=4.773; NIcor=0.630; NsEucl=0.913; SSD=1.499; NSW=0.925; rcor=63; rNcor=6; rlogoDP=17; rNIcor=4; rNsEucl=28; rSSD=65; rNSW=44; rank_mean=32.429; match_rank=17
a 0 7 7 4 9 16 16 16 0 4 3 7 0 0
c 0 3 2 3 1 0 0 0 0 7 3 5 0 0
g 0 2 1 4 0 0 0 0 16 1 9 3 0 0
t 0 4 6 5 6 0 0 0 0 4 1 1 0 0
|
PBF_MA0064.1_JASPAR_shift5 (PBF_MA0064.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_MA0064.1_JASPAR_shift5.png) |
0.965 |
0.439 |
4.331 |
0.442 |
0.923 |
0.296 |
0.970 |
1 |
113 |
32 |
76 |
12 |
1 |
1 |
33.714 |
21 |
; oligos_5-7nt_m1 versus PBF_MA0064.1_JASPAR; m=5/34; ncol2=5; w=5; offset=5; strand=D; shift=5; score=33.7143; -----AAAGy----
; cor=0.965; Ncor=0.439; logoDP=4.331; NIcor=0.442; NsEucl=0.923; SSD=0.296; NSW=0.970; rcor=1; rNcor=113; rlogoDP=32; rNIcor=76; rNsEucl=12; rSSD=1; rNSW=1; rank_mean=33.714; match_rank=21
a 0 0 0 0 0 16 16 16 0 1 0 0 0 0
c 0 0 0 0 0 0 0 0 0 9 0 0 0 0
g 0 0 0 0 0 0 0 0 16 1 0 0 0 0
t 0 0 0 0 0 0 0 0 0 5 0 0 0 0
|
MNB1A_MA0053.1_JASPAR_shift5 (MNB1A_MA0053.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/MNB1A_MA0053.1_JASPAR_shift5.png) |
0.963 |
0.438 |
4.331 |
0.440 |
0.921 |
0.311 |
0.969 |
2 |
114 |
31 |
77 |
14 |
2 |
2 |
34.571 |
23 |
; oligos_5-7nt_m1 versus MNB1A_MA0053.1_JASPAR; m=6/34; ncol2=5; w=5; offset=5; strand=D; shift=5; score=34.5714; -----AAAGc----
; cor=0.963; Ncor=0.438; logoDP=4.331; NIcor=0.440; NsEucl=0.921; SSD=0.311; NSW=0.969; rcor=2; rNcor=114; rlogoDP=31; rNIcor=77; rNsEucl=14; rSSD=2; rNSW=2; rank_mean=34.571; match_rank=23
a 0 0 0 0 0 15 15 15 0 3 0 0 0 0
c 0 0 0 0 0 0 0 0 0 9 0 0 0 0
g 0 0 0 0 0 0 0 0 15 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 3 0 0 0 0
|
_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift1 (_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift1.png) |
0.912 |
0.663 |
1.106 |
-0.047 |
0.920 |
0.818 |
0.949 |
10 |
7 |
111 |
112 |
16 |
23 |
22 |
43.000 |
28 |
; oligos_5-7nt_m1 versus _TATA_BINDING_TBP_1vol_AB_3D-footprint_rc; m=7/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score= 43; -TATAAaAg-----
; cor=0.912; Ncor=0.663; logoDP=1.106; NIcor=-0.047; NsEucl=0.920; SSD=0.818; NSW=0.949; rcor=10; rNcor=7; rlogoDP=111; rNIcor=112; rNsEucl=16; rSSD=23; rNSW=22; rank_mean=43.000; match_rank=28
a 0 0 96 0 96 96 48 96 16 0 0 0 0 0
c 0 0 0 0 0 0 16 0 16 0 0 0 0 0
g 0 0 0 0 0 0 16 0 64 0 0 0 0 0
t 0 96 0 96 0 0 16 0 0 0 0 0 0 0
|
_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc_shift1 (_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc_shift1.png) |
0.909 |
0.661 |
1.171 |
-0.030 |
0.920 |
0.829 |
0.948 |
12 |
8 |
109 |
110 |
18 |
25 |
24 |
43.714 |
29 |
; oligos_5-7nt_m1 versus _TATA_BINDING_TBP_1cdw_A_3D-footprint_rc; m=8/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=43.7143; -TATAAaAg-----
; cor=0.909; Ncor=0.661; logoDP=1.171; NIcor=-0.030; NsEucl=0.920; SSD=0.829; NSW=0.948; rcor=12; rNcor=8; rlogoDP=109; rNIcor=110; rNsEucl=18; rSSD=25; rNSW=24; rank_mean=43.714; match_rank=29
a 0 0 96 0 96 96 54 96 13 0 0 0 0 0
c 0 0 0 0 0 0 13 0 16 0 0 0 0 0
g 0 0 0 0 0 0 13 0 54 0 0 0 0 0
t 0 96 0 96 0 0 16 0 13 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift1.png) |
0.909 |
0.661 |
1.171 |
-0.030 |
0.919 |
0.832 |
0.948 |
13 |
9 |
108 |
111 |
19 |
26 |
25 |
44.429 |
30 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc; m=9/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=44.4286; -TATAAaAg-----
; cor=0.909; Ncor=0.661; logoDP=1.171; NIcor=-0.030; NsEucl=0.919; SSD=0.832; NSW=0.948; rcor=13; rNcor=9; rlogoDP=108; rNIcor=111; rNsEucl=19; rSSD=26; rNSW=25; rank_mean=44.429; match_rank=30
a 0 0 96 0 96 96 54 96 13 0 0 0 0 0
c 0 0 0 0 0 0 13 0 16 0 0 0 0 0
g 0 0 0 0 0 0 16 0 54 0 0 0 0 0
t 0 96 0 96 0 0 13 0 13 0 0 0 0 0
|
PBF_M01130_TRANSFAC_shift4 (PBF_M01130_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01130_TRANSFAC_shift4.png) |
0.886 |
0.483 |
4.678 |
0.469 |
0.899 |
0.735 |
0.939 |
25 |
93 |
19 |
65 |
70 |
20 |
31 |
46.143 |
32 |
; oligos_5-7nt_m1 versus PBF_M01130_TRANSFAC; m=10/34; ncol2=6; w=6; offset=4; strand=D; shift=4; score=46.1429; ----wAAAGg----
; cor=0.886; Ncor=0.483; logoDP=4.678; NIcor=0.469; NsEucl=0.899; SSD=0.735; NSW=0.939; rcor=25; rNcor=93; rlogoDP=19; rNIcor=65; rNsEucl=70; rSSD=20; rNSW=31; rank_mean=46.143; match_rank=32
a 0 0 0 0 6 11 11 11 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 2 0 0 0 0
g 0 0 0 0 1 0 0 0 11 7 0 0 0 0
t 0 0 0 0 4 0 0 0 0 2 0 0 0 0
|
Dof1_M00352_TRANSFAC_shift1 (Dof1_M00352_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof1_M00352_TRANSFAC_shift1.png) |
0.762 |
0.635 |
4.791 |
0.595 |
0.906 |
1.771 |
0.911 |
112 |
12 |
15 |
6 |
40 |
100 |
68 |
50.429 |
37 |
; oligos_5-7nt_m1 versus Dof1_M00352_TRANSFAC; m=11/34; ncol2=11; w=10; offset=1; strand=D; shift=1; score=50.4286; -aaywAAAGmhm--
; cor=0.762; Ncor=0.635; logoDP=4.791; NIcor=0.595; NsEucl=0.906; SSD=1.771; NSW=0.911; rcor=112; rNcor=12; rlogoDP=15; rNIcor=6; rNsEucl=40; rSSD=100; rNSW=68; rank_mean=50.429; match_rank=37
a 0 8 7 2 6 15 15 15 0 5 4 4 0 0
c 0 3 3 6 0 0 0 0 0 6 4 6 0 0
g 0 2 3 2 0 0 0 0 15 1 3 2 0 0
t 0 2 2 5 9 0 0 0 0 3 4 2 0 0
|
Dof2_M00353_TRANSFAC_shift1 (Dof2_M00353_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof2_M00353_TRANSFAC_shift1.png) |
0.751 |
0.626 |
4.461 |
0.582 |
0.905 |
1.803 |
0.910 |
125 |
14 |
26 |
9 |
45 |
103 |
74 |
56.571 |
46 |
; oligos_5-7nt_m1 versus Dof2_M00353_TRANSFAC; m=12/34; ncol2=11; w=10; offset=1; strand=D; shift=1; score=56.5714; -mmwwAAAGcrm--
; cor=0.751; Ncor=0.626; logoDP=4.461; NIcor=0.582; NsEucl=0.905; SSD=1.803; NSW=0.910; rcor=125; rNcor=14; rlogoDP=26; rNIcor=9; rNsEucl=45; rSSD=103; rNSW=74; rank_mean=56.571; match_rank=46
a 0 7 7 7 7 21 21 21 0 3 7 7 0 0
c 0 7 6 3 2 0 0 0 0 12 4 6 0 0
g 0 2 4 4 2 0 0 0 21 2 6 5 0 0
t 0 5 4 7 10 0 0 0 0 4 4 3 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift1.png) |
0.863 |
0.628 |
1.168 |
-0.029 |
0.905 |
1.163 |
0.927 |
36 |
13 |
110 |
109 |
48 |
39 |
43 |
56.857 |
48 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc; m=13/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=56.8571; -AATAAaAg-----
; cor=0.863; Ncor=0.628; logoDP=1.168; NIcor=-0.029; NsEucl=0.905; SSD=1.163; NSW=0.927; rcor=36; rNcor=13; rlogoDP=110; rNIcor=109; rNsEucl=48; rSSD=39; rNSW=43; rank_mean=56.857; match_rank=48
a 0 96 96 0 96 74 53 96 10 0 0 0 0 0
c 0 0 0 0 0 10 21 0 22 0 0 0 0 0
g 0 0 0 0 0 10 10 0 64 0 0 0 0 0
t 0 0 0 96 0 2 12 0 0 0 0 0 0 0
|
CDF3_MA0974.1_JASPAR_shift3 (CDF3_MA0974.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF3_MA0974.1_JASPAR_shift3.png) |
0.789 |
0.526 |
3.822 |
0.501 |
0.895 |
1.420 |
0.911 |
73 |
57 |
40 |
48 |
83 |
52 |
69 |
60.286 |
55 |
; oligos_5-7nt_m1 versus CDF3_MA0974.1_JASPAR; m=14/34; ncol2=9; w=8; offset=3; strand=D; shift=3; score=60.2857; ---awAAAGygm--
; cor=0.789; Ncor=0.526; logoDP=3.822; NIcor=0.501; NsEucl=0.895; SSD=1.420; NSW=0.911; rcor=73; rNcor=57; rlogoDP=40; rNIcor=48; rNsEucl=83; rSSD=52; rNSW=69; rank_mean=60.286; match_rank=55
a 0 0 0 447 607 994 989 880 19 70 222 286 0 0
c 0 0 0 143 29 3 5 27 7 291 102 343 0 0
g 0 0 0 220 65 1 0 83 969 160 495 169 0 0
t 0 0 0 191 298 2 6 10 6 479 180 202 0 0
|
SED_M01128_TRANSFAC_rc_shift4 (SED_M01128_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SED_M01128_TRANSFAC_rc_shift4.png) |
0.891 |
0.446 |
0.323 |
-0.054 |
0.917 |
0.679 |
0.951 |
20 |
112 |
123 |
114 |
23 |
14 |
17 |
60.429 |
56 |
; oligos_5-7nt_m1 versus SED_M01128_TRANSFAC_rc; m=15/34; ncol2=10; w=7; offset=4; strand=R; shift=4; score=60.4286; ----dAAAGbddrb
; cor=0.891; Ncor=0.446; logoDP=0.323; NIcor=-0.054; NsEucl=0.917; SSD=0.679; NSW=0.951; rcor=20; rNcor=112; rlogoDP=123; rNIcor=114; rNsEucl=23; rSSD=14; rNSW=17; rank_mean=60.429; match_rank=56
a 0 0 0 0 4 8 8 8 0 0 2 2 5 0
c 0 0 0 0 0 0 0 0 0 2 1 1 0 3
g 0 0 0 0 2 0 0 0 8 4 3 2 3 2
t 0 0 0 0 2 0 0 0 0 2 2 3 0 3
|
cdf3_M0651_1.02_CISBP_shift3 (cdf3_M0651_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/cdf3_M0651_1.02_CISBP_shift3.png) |
0.789 |
0.526 |
3.821 |
0.501 |
0.895 |
1.421 |
0.911 |
74 |
58 |
41 |
49 |
84 |
53 |
70 |
61.286 |
59 |
; oligos_5-7nt_m1 versus cdf3_M0651_1.02_CISBP; m=16/34; ncol2=9; w=8; offset=3; strand=D; shift=3; score=61.2857; ---awAAAGygm--
; cor=0.789; Ncor=0.526; logoDP=3.821; NIcor=0.501; NsEucl=0.895; SSD=1.421; NSW=0.911; rcor=74; rNcor=58; rlogoDP=41; rNIcor=49; rNsEucl=84; rSSD=53; rNSW=70; rank_mean=61.286; match_rank=59
a 0 0 0 45 61 100 99 88 2 7 22 29 0 0
c 0 0 0 14 3 0 0 3 1 29 10 34 0 0
g 0 0 0 22 7 0 0 8 96 16 50 17 0 0
t 0 0 0 19 29 0 1 1 1 48 18 20 0 0
|
e_gw1.392.16.1_M0660_1.02_CISBP_shift2 (e_gw1.392.16.1_M0660_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.392.16.1_M0660_1.02_CISBP_shift2.png) |
0.759 |
0.621 |
2.212 |
0.583 |
0.900 |
1.618 |
0.910 |
116 |
15 |
69 |
8 |
68 |
83 |
71 |
61.429 |
60 |
; oligos_5-7nt_m1 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=17/34; ncol2=9; w=9; offset=2; strand=D; shift=2; score=61.4286; --vrwAAaGyd---
; cor=0.759; Ncor=0.621; logoDP=2.212; NIcor=0.583; NsEucl=0.900; SSD=1.618; NSW=0.910; rcor=116; rNcor=15; rlogoDP=69; rNIcor=8; rNsEucl=68; rSSD=83; rNSW=71; rank_mean=61.429; match_rank=60
a 0 0 26 33 48 86 93 67 7 13 28 0 0 0
c 0 0 26 19 7 6 3 15 3 29 16 0 0 0
g 0 0 26 26 12 2 0 5 90 20 30 0 0 0
t 0 0 22 22 33 6 4 13 0 38 26 0 0 0
|
PHYPADRAFT_153324_MA0989.1_JASPAR_shift2 (PHYPADRAFT_153324_MA0989.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_153324_MA0989.1_JASPAR_shift2.png) |
0.758 |
0.620 |
2.193 |
0.583 |
0.900 |
1.622 |
0.910 |
117 |
16 |
70 |
7 |
69 |
84 |
73 |
62.286 |
61 |
; oligos_5-7nt_m1 versus PHYPADRAFT_153324_MA0989.1_JASPAR; m=18/34; ncol2=9; w=9; offset=2; strand=D; shift=2; score=62.2857; --vrwAAaGyd---
; cor=0.758; Ncor=0.620; logoDP=2.193; NIcor=0.583; NsEucl=0.900; SSD=1.622; NSW=0.910; rcor=117; rNcor=16; rlogoDP=70; rNIcor=7; rNsEucl=69; rSSD=84; rNSW=73; rank_mean=62.286; match_rank=61
a 0 0 253 334 482 861 926 672 71 139 285 0 0 0
c 0 0 264 193 71 62 36 147 27 288 158 0 0 0
g 0 0 261 255 118 13 0 52 898 195 297 0 0 0
t 0 0 222 218 330 65 38 129 5 378 260 0 0 0
|
CDF2_MA0973.1_JASPAR_shift2 (CDF2_MA0973.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_MA0973.1_JASPAR_shift2.png) |
0.767 |
0.575 |
3.899 |
0.559 |
0.899 |
1.665 |
0.907 |
108 |
30 |
39 |
19 |
73 |
89 |
79 |
62.429 |
62 |
; oligos_5-7nt_m1 versus CDF2_MA0973.1_JASPAR; m=19/34; ncol2=10; w=9; offset=2; strand=D; shift=2; score=62.4286; --maWAAAGyrh--
; cor=0.767; Ncor=0.575; logoDP=3.899; NIcor=0.559; NsEucl=0.899; SSD=1.665; NSW=0.907; rcor=108; rNcor=30; rlogoDP=39; rNIcor=19; rNsEucl=73; rSSD=89; rNSW=79; rank_mean=62.429; match_rank=62
a 0 0 334 608 693 980 979 868 17 53 328 299 0 0
c 0 0 284 92 16 10 10 29 7 295 77 282 0 0
g 0 0 235 150 41 4 2 81 969 154 395 155 0 0
t 0 0 148 150 250 5 9 22 6 498 200 264 0 0
|
CDF2_M0653_1.02_CISBP_shift2 (CDF2_M0653_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_M0653_1.02_CISBP_shift2.png) |
0.766 |
0.574 |
3.908 |
0.558 |
0.898 |
1.675 |
0.907 |
109 |
31 |
38 |
20 |
75 |
91 |
81 |
63.571 |
67 |
; oligos_5-7nt_m1 versus CDF2_M0653_1.02_CISBP; m=20/34; ncol2=10; w=9; offset=2; strand=D; shift=2; score=63.5714; --maWAAAGyrh--
; cor=0.766; Ncor=0.574; logoDP=3.908; NIcor=0.558; NsEucl=0.898; SSD=1.675; NSW=0.907; rcor=109; rNcor=31; rlogoDP=38; rNIcor=20; rNsEucl=75; rSSD=91; rNSW=81; rank_mean=63.571; match_rank=67
a 0 0 33 61 69 98 98 87 2 5 33 30 0 0
c 0 0 28 9 2 1 1 3 0 29 8 28 0 0
g 0 0 23 15 4 0 0 8 97 15 39 16 0 0
t 0 0 16 15 25 1 1 2 1 51 20 26 0 0
|
DOF5.7_MA0984.1_JASPAR_shift4 (DOF5.7_MA0984.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.7_MA0984.1_JASPAR_shift4.png) |
0.803 |
0.468 |
2.305 |
0.463 |
0.898 |
1.015 |
0.928 |
58 |
102 |
66 |
69 |
76 |
37 |
42 |
64.286 |
69 |
; oligos_5-7nt_m1 versus DOF5.7_MA0984.1_JASPAR; m=21/34; ncol2=8; w=7; offset=4; strand=D; shift=4; score=64.2857; ----aAAArrgg--
; cor=0.803; Ncor=0.468; logoDP=2.305; NIcor=0.463; NsEucl=0.898; SSD=1.015; NSW=0.928; rcor=58; rNcor=102; rlogoDP=66; rNIcor=69; rNsEucl=76; rSSD=37; rNSW=42; rank_mean=64.286; match_rank=69
a 0 0 0 0 448 684 970 899 363 485 102 174 0 0
c 0 0 0 0 86 12 4 3 42 61 191 215 0 0
g 0 0 0 0 224 61 10 79 589 443 460 408 0 0
t 0 0 0 0 241 243 16 19 6 11 247 204 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn6_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn6_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn6_B_3D-footprint_rc_shift1.png) |
0.837 |
0.609 |
0.857 |
-0.095 |
0.898 |
1.342 |
0.916 |
39 |
18 |
115 |
119 |
79 |
46 |
58 |
67.714 |
73 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn6_B_3D-footprint_rc; m=22/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=67.7143; -TATAATAG-----
; cor=0.837; Ncor=0.609; logoDP=0.857; NIcor=-0.095; NsEucl=0.898; SSD=1.342; NSW=0.916; rcor=39; rNcor=18; rlogoDP=115; rNIcor=119; rNsEucl=79; rSSD=46; rNSW=58; rank_mean=67.714; match_rank=73
a 0 8 83 1 96 83 6 96 8 0 0 0 0 0
c 0 6 7 6 0 6 6 0 6 0 0 0 0 0
g 0 6 6 0 0 7 6 0 76 0 0 0 0 0
t 0 76 0 89 0 0 78 0 6 0 0 0 0 0
|
PBF_M01829_TRANSFAC_rc_shift4 (PBF_M01829_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01829_TRANSFAC_rc_shift4.png) |
0.885 |
0.483 |
0.310 |
-0.123 |
0.901 |
0.703 |
0.941 |
26 |
94 |
124 |
123 |
67 |
17 |
30 |
68.714 |
78 |
; oligos_5-7nt_m1 versus PBF_M01829_TRANSFAC_rc; m=23/34; ncol2=6; w=6; offset=4; strand=R; shift=4; score=68.7143; ----wAAAGk----
; cor=0.885; Ncor=0.483; logoDP=0.310; NIcor=-0.123; NsEucl=0.901; SSD=0.703; NSW=0.941; rcor=26; rNcor=94; rlogoDP=124; rNIcor=123; rNsEucl=67; rSSD=17; rNSW=30; rank_mean=68.714; match_rank=78
a 0 0 0 0 7 16 16 16 0 1 0 0 0 0
c 0 0 0 0 2 0 0 0 0 2 0 0 0 0
g 0 0 0 0 1 0 0 0 16 7 0 0 0 0
t 0 0 0 0 6 0 0 0 0 6 0 0 0 0
|
PHYPADRAFT_38837_MA1022.1_JASPAR_shift2 (PHYPADRAFT_38837_MA1022.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_38837_MA1022.1_JASPAR_shift2.png) |
0.753 |
0.565 |
1.811 |
0.536 |
0.899 |
1.665 |
0.907 |
121 |
34 |
92 |
25 |
72 |
88 |
78 |
72.857 |
82 |
; oligos_5-7nt_m1 versus PHYPADRAFT_38837_MA1022.1_JASPAR; m=24/34; ncol2=10; w=9; offset=2; strand=D; shift=2; score=72.8571; --vrwAAaGydm--
; cor=0.753; Ncor=0.565; logoDP=1.811; NIcor=0.536; NsEucl=0.899; SSD=1.665; NSW=0.907; rcor=121; rNcor=34; rlogoDP=92; rNIcor=25; rNsEucl=72; rSSD=88; rNSW=78; rank_mean=72.857; match_rank=82
a 0 0 251 343 463 828 855 644 61 150 259 283 0 0
c 0 0 264 186 85 68 62 216 27 269 174 262 0 0
g 0 0 257 254 129 24 1 54 860 207 307 227 0 0
t 0 0 228 217 323 81 82 86 52 374 259 227 0 0
|
gw1.385.26.1_M0663_1.02_CISBP_shift2 (gw1.385.26.1_M0663_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/gw1.385.26.1_M0663_1.02_CISBP_shift2.png) |
0.753 |
0.565 |
1.818 |
0.535 |
0.899 |
1.665 |
0.907 |
122 |
35 |
91 |
27 |
71 |
87 |
77 |
72.857 |
83 |
; oligos_5-7nt_m1 versus gw1.385.26.1_M0663_1.02_CISBP; m=25/34; ncol2=10; w=9; offset=2; strand=D; shift=2; score=72.8571; --vrwAAaGydm--
; cor=0.753; Ncor=0.565; logoDP=1.818; NIcor=0.535; NsEucl=0.899; SSD=1.665; NSW=0.907; rcor=122; rNcor=35; rlogoDP=91; rNIcor=27; rNsEucl=71; rSSD=87; rNSW=77; rank_mean=72.857; match_rank=83
a 0 0 25 34 46 83 86 64 6 15 26 28 0 0
c 0 0 26 19 9 7 6 22 3 27 17 26 0 0
g 0 0 26 25 13 2 0 5 86 21 31 23 0 0
t 0 0 23 22 32 8 8 9 5 37 26 23 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift1.png) |
0.798 |
0.580 |
2.700 |
0.135 |
0.884 |
1.719 |
0.893 |
64 |
25 |
57 |
92 |
95 |
95 |
97 |
75.000 |
85 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=26/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score= 75; -TTTAAaAg-----
; cor=0.798; Ncor=0.580; logoDP=2.700; NIcor=0.135; NsEucl=0.884; SSD=1.719; NSW=0.893; rcor=64; rNcor=25; rlogoDP=57; rNIcor=92; rNsEucl=95; rSSD=95; rNSW=97; rank_mean=75.000; match_rank=85
a 0 1 0 10 96 96 64 96 10 0 0 0 0 0
c 0 10 0 0 0 0 10 0 12 0 0 0 0 0
g 0 0 0 1 0 0 12 0 64 0 0 0 0 0
t 0 85 96 85 0 0 10 0 10 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc_shift1.png) |
0.826 |
0.601 |
1.212 |
-0.023 |
0.890 |
1.539 |
0.904 |
45 |
19 |
106 |
108 |
89 |
78 |
88 |
76.143 |
87 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc; m=27/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=76.1429; -TATAAaAt-----
; cor=0.826; Ncor=0.601; logoDP=1.212; NIcor=-0.023; NsEucl=0.890; SSD=1.539; NSW=0.904; rcor=45; rNcor=19; rlogoDP=106; rNIcor=108; rNsEucl=89; rSSD=78; rNSW=88; rank_mean=76.143; match_rank=87
a 0 0 96 0 96 96 57 96 16 0 0 0 0 0
c 0 0 0 0 0 0 13 0 13 0 0 0 0 0
g 0 0 0 0 0 0 13 0 13 0 0 0 0 0
t 0 96 0 96 0 0 13 0 54 0 0 0 0 0
|
DOF1.8_MA0981.1_JASPAR_shift2 (DOF1.8_MA0981.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF1.8_MA0981.1_JASPAR_shift2.png) |
0.750 |
0.563 |
1.729 |
0.534 |
0.898 |
1.688 |
0.906 |
126 |
36 |
97 |
28 |
78 |
93 |
84 |
77.429 |
89 |
; oligos_5-7nt_m1 versus DOF1.8_MA0981.1_JASPAR; m=28/34; ncol2=10; w=9; offset=2; strand=D; shift=2; score=77.4286; --vawAAaGtdr--
; cor=0.750; Ncor=0.563; logoDP=1.729; NIcor=0.534; NsEucl=0.898; SSD=1.688; NSW=0.906; rcor=126; rNcor=36; rlogoDP=97; rNIcor=28; rNsEucl=78; rSSD=93; rNSW=84; rank_mean=77.429; match_rank=89
a 0 0 251 321 415 812 831 658 65 170 268 288 0 0
c 0 0 259 197 100 72 64 233 23 241 189 209 0 0
g 0 0 256 250 135 38 3 27 846 231 270 269 0 0
t 0 0 234 233 350 77 102 83 65 359 273 234 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn7_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn7_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn7_B_3D-footprint_rc_shift1.png) |
0.773 |
0.562 |
3.085 |
0.165 |
0.878 |
1.896 |
0.881 |
98 |
38 |
44 |
90 |
104 |
111 |
112 |
85.286 |
97 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn7_B_3D-footprint_rc; m=29/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=85.2857; -TATATAAG-----
; cor=0.773; Ncor=0.562; logoDP=3.085; NIcor=0.165; NsEucl=0.878; SSD=1.896; NSW=0.881; rcor=98; rNcor=38; rlogoDP=44; rNIcor=90; rNsEucl=104; rSSD=111; rNSW=112; rank_mean=85.286; match_rank=97
a 0 8 96 0 96 0 69 96 8 0 0 0 0 0
c 0 8 0 8 0 0 8 0 11 0 0 0 0 0
g 0 11 0 1 0 0 11 0 69 0 0 0 0 0
t 0 69 0 87 0 96 8 0 8 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn5_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn5_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn5_B_3D-footprint_rc_shift1.png) |
0.793 |
0.577 |
0.491 |
-0.139 |
0.887 |
1.625 |
0.898 |
69 |
28 |
119 |
125 |
92 |
85 |
92 |
87.143 |
99 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn5_B_3D-footprint_rc; m=30/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=87.1429; -TATAAGAg-----
; cor=0.793; Ncor=0.577; logoDP=0.491; NIcor=-0.139; NsEucl=0.887; SSD=1.625; NSW=0.898; rcor=69; rNcor=28; rlogoDP=119; rNIcor=125; rNsEucl=92; rSSD=85; rNSW=92; rank_mean=87.143; match_rank=99
a 0 5 96 11 96 88 9 96 14 0 0 0 0 0
c 0 3 0 9 0 4 11 0 16 0 0 0 0 0
g 0 3 0 9 0 2 67 0 52 0 0 0 0 0
t 0 85 0 67 0 2 9 0 14 0 0 0 0 0
|
ATDOF2.4_M0648_1.02_CISBP_shift3 (ATDOF2.4_M0648_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATDOF2.4_M0648_1.02_CISBP_shift3.png) |
0.772 |
0.492 |
1.581 |
0.467 |
0.878 |
1.463 |
0.895 |
101 |
90 |
102 |
67 |
105 |
59 |
93 |
88.143 |
103 |
; oligos_5-7nt_m1 versus ATDOF2.4_M0648_1.02_CISBP; m=31/34; ncol2=7; w=7; offset=3; strand=D; shift=3; score=88.1429; ---awAAaGt----
; cor=0.772; Ncor=0.492; logoDP=1.581; NIcor=0.467; NsEucl=0.878; SSD=1.463; NSW=0.895; rcor=101; rNcor=90; rlogoDP=102; rNIcor=67; rNsEucl=105; rSSD=59; rNSW=93; rank_mean=88.143; match_rank=103
a 0 0 0 38 43 81 81 66 8 18 0 0 0 0
c 0 0 0 17 8 7 7 24 8 24 0 0 0 0
g 0 0 0 23 13 2 0 2 76 21 0 0 0 0
t 0 0 0 22 36 10 12 8 8 37 0 0 0 0
|
DOF2.4_MA0982.1_JASPAR_shift3 (DOF2.4_MA0982.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.4_MA0982.1_JASPAR_shift3.png) |
0.768 |
0.489 |
1.587 |
0.464 |
0.877 |
1.484 |
0.894 |
105 |
92 |
101 |
68 |
108 |
63 |
95 |
90.286 |
108 |
; oligos_5-7nt_m1 versus DOF2.4_MA0982.1_JASPAR; m=32/34; ncol2=7; w=7; offset=3; strand=D; shift=3; score=90.2857; ---awAAmGt----
; cor=0.768; Ncor=0.489; logoDP=1.587; NIcor=0.464; NsEucl=0.877; SSD=1.484; NSW=0.894; rcor=105; rNcor=92; rlogoDP=101; rNIcor=68; rNsEucl=108; rSSD=63; rNSW=95; rank_mean=90.286; match_rank=108
a 0 0 0 381 426 807 815 658 81 177 0 0 0 0
c 0 0 0 171 90 71 66 252 73 242 0 0 0 0
g 0 0 0 233 127 18 1 16 762 210 0 0 0 0
t 0 0 0 215 356 104 118 75 84 371 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc_shift1.png) |
0.764 |
0.555 |
1.402 |
0.019 |
0.876 |
1.954 |
0.878 |
111 |
40 |
105 |
98 |
110 |
116 |
116 |
99.429 |
117 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc; m=33/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=99.4286; -TATAAACG-----
; cor=0.764; Ncor=0.555; logoDP=1.402; NIcor=0.019; NsEucl=0.876; SSD=1.954; NSW=0.878; rcor=111; rNcor=40; rlogoDP=105; rNIcor=98; rNsEucl=110; rSSD=116; rNSW=116; rank_mean=99.429; match_rank=117
a 0 7 96 1 96 88 75 7 7 0 0 0 0 0
c 0 7 0 7 0 8 7 88 7 0 0 0 0 0
g 0 7 0 0 0 0 7 1 73 0 0 0 0 0
t 0 75 0 88 0 0 7 0 9 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift1.png) |
0.753 |
0.548 |
0.594 |
-0.137 |
0.872 |
2.097 |
0.869 |
123 |
42 |
118 |
124 |
123 |
124 |
124 |
111.143 |
126 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc; m=34/34; ncol2=8; w=8; offset=1; strand=R; shift=1; score=111.143; -TACAAaAG-----
; cor=0.753; Ncor=0.548; logoDP=0.594; NIcor=-0.137; NsEucl=0.872; SSD=2.097; NSW=0.869; rcor=123; rNcor=42; rlogoDP=118; rNIcor=124; rNsEucl=123; rSSD=124; rNSW=124; rank_mean=111.143; match_rank=126
a 0 8 96 0 96 96 61 96 8 0 0 0 0 0
c 0 0 0 88 0 0 8 0 8 0 0 0 0 0
g 0 10 0 0 0 0 19 0 72 0 0 0 0 0
t 0 78 0 8 0 0 8 0 8 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m4_shift0 (oligos_5-7nt_m4) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m4_shift0.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m4; m=0 (reference); ncol1=13; shift=0; ncol=15; awwTAAAAAAGww--
; Alignment reference
a 69 72 99 0 186 182 195 201 191 180 0 75 85 0 0
c 41 46 27 16 9 12 3 4 4 3 8 33 44 0 0
g 52 35 31 19 3 7 3 2 8 12 190 41 27 0 0
t 49 58 54 176 13 10 10 4 8 16 13 62 55 0 0
|
CDF2_MA0973.1_JASPAR_shift4 (CDF2_MA0973.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_MA0973.1_JASPAR_shift4.png) |
0.884 |
0.568 |
4.614 |
0.564 |
0.927 |
0.873 |
0.951 |
28 |
32 |
21 |
15 |
2 |
29 |
18 |
20.714 |
3 |
; oligos_5-7nt_m4 versus CDF2_MA0973.1_JASPAR; m=1/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=20.7143; ----maWAAAGyrh-
; cor=0.884; Ncor=0.568; logoDP=4.614; NIcor=0.564; NsEucl=0.927; SSD=0.873; NSW=0.951; rcor=28; rNcor=32; rlogoDP=21; rNIcor=15; rNsEucl=2; rSSD=29; rNSW=18; rank_mean=20.714; match_rank=3
a 0 0 0 0 334 608 693 980 979 868 17 53 328 299 0
c 0 0 0 0 284 92 16 10 10 29 7 295 77 282 0
g 0 0 0 0 235 150 41 4 2 81 969 154 395 155 0
t 0 0 0 0 148 150 250 5 9 22 6 498 200 264 0
|
CDF2_M0653_1.02_CISBP_shift4 (CDF2_M0653_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_M0653_1.02_CISBP_shift4.png) |
0.883 |
0.568 |
4.629 |
0.563 |
0.926 |
0.879 |
0.951 |
29 |
33 |
20 |
17 |
3 |
30 |
19 |
21.571 |
4 |
; oligos_5-7nt_m4 versus CDF2_M0653_1.02_CISBP; m=2/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=21.5714; ----maWAAAGyrh-
; cor=0.883; Ncor=0.568; logoDP=4.629; NIcor=0.563; NsEucl=0.926; SSD=0.879; NSW=0.951; rcor=29; rNcor=33; rlogoDP=20; rNIcor=17; rNsEucl=3; rSSD=30; rNSW=19; rank_mean=21.571; match_rank=4
a 0 0 0 0 33 61 69 98 98 87 2 5 33 30 0
c 0 0 0 0 28 9 2 1 1 3 0 29 8 28 0
g 0 0 0 0 23 15 4 0 0 8 97 15 39 16 0
t 0 0 0 0 16 15 25 1 1 2 1 51 20 26 0
|
DOF2.5_MA0977.1_JASPAR_shift5 (DOF2.5_MA0977.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.5_MA0977.1_JASPAR_shift5.png) |
0.871 |
0.536 |
4.857 |
0.542 |
0.916 |
0.911 |
0.943 |
33 |
52 |
13 |
23 |
24 |
34 |
28 |
29.571 |
11 |
; oligos_5-7nt_m4 versus DOF2.5_MA0977.1_JASPAR; m=3/37; ncol2=8; w=8; offset=5; strand=D; shift=5; score=29.5714; -----AwAARGTg--
; cor=0.871; Ncor=0.536; logoDP=4.857; NIcor=0.542; NsEucl=0.916; SSD=0.911; NSW=0.943; rcor=33; rNcor=52; rlogoDP=13; rNIcor=23; rNsEucl=24; rSSD=34; rNSW=28; rank_mean=29.571; match_rank=11
a 0 0 0 0 0 756 598 990 986 744 4 8 238 0 0
c 0 0 0 0 0 26 1 1 1 1 1 198 44 0 0
g 0 0 0 0 0 182 12 4 8 254 977 65 557 0 0
t 0 0 0 0 0 36 389 5 6 1 18 729 160 0 0
|
cdf3_M0651_1.02_CISBP_shift5 (cdf3_M0651_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/cdf3_M0651_1.02_CISBP_shift5.png) |
0.888 |
0.507 |
4.571 |
0.505 |
0.924 |
0.745 |
0.953 |
22 |
81 |
22 |
44 |
10 |
21 |
13 |
30.429 |
12 |
; oligos_5-7nt_m4 versus cdf3_M0651_1.02_CISBP; m=4/37; ncol2=9; w=8; offset=5; strand=D; shift=5; score=30.4286; -----awAAAGygm-
; cor=0.888; Ncor=0.507; logoDP=4.571; NIcor=0.505; NsEucl=0.924; SSD=0.745; NSW=0.953; rcor=22; rNcor=81; rlogoDP=22; rNIcor=44; rNsEucl=10; rSSD=21; rNSW=13; rank_mean=30.429; match_rank=12
a 0 0 0 0 0 45 61 100 99 88 2 7 22 29 0
c 0 0 0 0 0 14 3 0 0 3 1 29 10 34 0
g 0 0 0 0 0 22 7 0 0 8 96 16 50 17 0
t 0 0 0 0 0 19 29 0 1 1 1 48 18 20 0
|
CDF3_MA0974.1_JASPAR_shift5 (CDF3_MA0974.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF3_MA0974.1_JASPAR_shift5.png) |
0.887 |
0.507 |
4.549 |
0.504 |
0.923 |
0.749 |
0.953 |
23 |
83 |
23 |
45 |
11 |
22 |
15 |
31.714 |
14 |
; oligos_5-7nt_m4 versus CDF3_MA0974.1_JASPAR; m=5/37; ncol2=9; w=8; offset=5; strand=D; shift=5; score=31.7143; -----awAAAGygm-
; cor=0.887; Ncor=0.507; logoDP=4.549; NIcor=0.504; NsEucl=0.923; SSD=0.749; NSW=0.953; rcor=23; rNcor=83; rlogoDP=23; rNIcor=45; rNsEucl=11; rSSD=22; rNSW=15; rank_mean=31.714; match_rank=14
a 0 0 0 0 0 447 607 994 989 880 19 70 222 286 0
c 0 0 0 0 0 143 29 3 5 27 7 291 102 343 0
g 0 0 0 0 0 220 65 1 0 83 969 160 495 169 0
t 0 0 0 0 0 191 298 2 6 10 6 479 180 202 0
|
Dof_M01136_TRANSFAC_shift3 (Dof_M01136_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof_M01136_TRANSFAC_shift3.png) |
0.820 |
0.586 |
5.618 |
0.579 |
0.913 |
1.505 |
0.925 |
47 |
24 |
3 |
10 |
29 |
67 |
45 |
32.143 |
16 |
; oligos_5-7nt_m4 versus Dof_M01136_TRANSFAC; m=6/37; ncol2=11; w=10; offset=3; strand=D; shift=3; score=32.1429; ---amaaAAAGwar-
; cor=0.820; Ncor=0.586; logoDP=5.618; NIcor=0.579; NsEucl=0.913; SSD=1.505; NSW=0.925; rcor=47; rNcor=24; rlogoDP=3; rNIcor=10; rNsEucl=29; rSSD=67; rNSW=45; rank_mean=32.143; match_rank=16
a 0 0 0 4 3 6 6 9 9 9 0 3 5 3 0
c 0 0 0 2 3 0 0 0 0 0 0 1 1 2 0
g 0 0 0 2 1 2 2 0 0 0 9 2 2 3 0
t 0 0 0 1 2 1 1 0 0 0 0 3 1 1 0
|
Dof2_MA0020.1_JASPAR_shift7 (Dof2_MA0020.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof2_MA0020.1_JASPAR_shift7.png) |
0.936 |
0.432 |
4.965 |
0.438 |
0.923 |
0.428 |
0.964 |
5 |
115 |
10 |
78 |
13 |
5 |
5 |
33.000 |
20 |
; oligos_5-7nt_m4 versus Dof2_MA0020.1_JASPAR; m=7/37; ncol2=6; w=6; offset=7; strand=D; shift=7; score= 33; -------AAAGcm--
; cor=0.936; Ncor=0.432; logoDP=4.965; NIcor=0.438; NsEucl=0.923; SSD=0.428; NSW=0.964; rcor=5; rNcor=115; rlogoDP=10; rNIcor=78; rNsEucl=13; rSSD=5; rNSW=5; rank_mean=33.000; match_rank=20
a 0 0 0 0 0 0 0 21 21 21 0 3 7 0 0
c 0 0 0 0 0 0 0 0 0 0 0 14 6 0 0
g 0 0 0 0 0 0 0 0 0 0 21 2 3 0 0
t 0 0 0 0 0 0 0 0 0 0 0 2 5 0 0
|
Dof3_MA0021.1_JASPAR_shift7 (Dof3_MA0021.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof3_MA0021.1_JASPAR_shift7.png) |
0.926 |
0.428 |
4.970 |
0.449 |
0.919 |
0.478 |
0.960 |
8 |
118 |
9 |
74 |
21 |
7 |
7 |
34.857 |
24 |
; oligos_5-7nt_m4 versus Dof3_MA0021.1_JASPAR; m=8/37; ncol2=6; w=6; offset=7; strand=D; shift=7; score=34.8571; -------AAAGyv--
; cor=0.926; Ncor=0.428; logoDP=4.970; NIcor=0.449; NsEucl=0.919; SSD=0.478; NSW=0.960; rcor=8; rNcor=118; rlogoDP=9; rNIcor=74; rNsEucl=21; rSSD=7; rNSW=7; rank_mean=34.857; match_rank=24
a 0 0 0 0 0 0 0 21 21 21 0 0 6 0 0
c 0 0 0 0 0 0 0 0 0 0 0 10 6 0 0
g 0 0 0 0 0 0 0 0 0 0 21 3 9 0 0
t 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0
|
PHYPADRAFT_153324_MA0989.1_JASPAR_shift4 (PHYPADRAFT_153324_MA0989.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_153324_MA0989.1_JASPAR_shift4.png) |
0.812 |
0.562 |
2.788 |
0.548 |
0.907 |
1.389 |
0.923 |
48 |
37 |
52 |
21 |
35 |
50 |
47 |
41.429 |
26 |
; oligos_5-7nt_m4 versus PHYPADRAFT_153324_MA0989.1_JASPAR; m=9/37; ncol2=9; w=9; offset=4; strand=D; shift=4; score=41.4286; ----vrwAAaGyd--
; cor=0.812; Ncor=0.562; logoDP=2.788; NIcor=0.548; NsEucl=0.907; SSD=1.389; NSW=0.923; rcor=48; rNcor=37; rlogoDP=52; rNIcor=21; rNsEucl=35; rSSD=50; rNSW=47; rank_mean=41.429; match_rank=26
a 0 0 0 0 253 334 482 861 926 672 71 139 285 0 0
c 0 0 0 0 264 193 71 62 36 147 27 288 158 0 0
g 0 0 0 0 261 255 118 13 0 52 898 195 297 0 0
t 0 0 0 0 222 218 330 65 38 129 5 378 260 0 0
|
e_gw1.392.16.1_M0660_1.02_CISBP_shift4 (e_gw1.392.16.1_M0660_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.392.16.1_M0660_1.02_CISBP_shift4.png) |
0.811 |
0.562 |
2.812 |
0.547 |
0.907 |
1.394 |
0.923 |
50 |
39 |
51 |
22 |
36 |
51 |
48 |
42.429 |
27 |
; oligos_5-7nt_m4 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=10/37; ncol2=9; w=9; offset=4; strand=D; shift=4; score=42.4286; ----vrwAAaGyd--
; cor=0.811; Ncor=0.562; logoDP=2.812; NIcor=0.547; NsEucl=0.907; SSD=1.394; NSW=0.923; rcor=50; rNcor=39; rlogoDP=51; rNIcor=22; rNsEucl=36; rSSD=51; rNSW=48; rank_mean=42.429; match_rank=27
a 0 0 0 0 26 33 48 86 93 67 7 13 28 0 0
c 0 0 0 0 26 19 7 6 3 15 3 29 16 0 0
g 0 0 0 0 26 26 12 2 0 5 90 20 30 0 0
t 0 0 0 0 22 22 33 6 4 13 0 38 26 0 0
|
PBF_M01130_TRANSFAC_shift6 (PBF_M01130_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01130_TRANSFAC_shift6.png) |
0.901 |
0.416 |
5.223 |
0.414 |
0.905 |
0.646 |
0.946 |
17 |
123 |
7 |
84 |
44 |
13 |
26 |
44.857 |
31 |
; oligos_5-7nt_m4 versus PBF_M01130_TRANSFAC; m=11/37; ncol2=6; w=6; offset=6; strand=D; shift=6; score=44.8571; ------wAAAGg---
; cor=0.901; Ncor=0.416; logoDP=5.223; NIcor=0.414; NsEucl=0.905; SSD=0.646; NSW=0.946; rcor=17; rNcor=123; rlogoDP=7; rNIcor=84; rNsEucl=44; rSSD=13; rNSW=26; rank_mean=44.857; match_rank=31
a 0 0 0 0 0 0 6 11 11 11 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0
g 0 0 0 0 0 0 1 0 0 0 11 7 0 0 0
t 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0
|
PHYPADRAFT_38837_MA1022.1_JASPAR_shift4 (PHYPADRAFT_38837_MA1022.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_38837_MA1022.1_JASPAR_shift4.png) |
0.812 |
0.522 |
2.274 |
0.512 |
0.906 |
1.440 |
0.920 |
49 |
62 |
68 |
39 |
42 |
54 |
49 |
51.857 |
40 |
; oligos_5-7nt_m4 versus PHYPADRAFT_38837_MA1022.1_JASPAR; m=12/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=51.8571; ----vrwAAaGydm-
; cor=0.812; Ncor=0.522; logoDP=2.274; NIcor=0.512; NsEucl=0.906; SSD=1.440; NSW=0.920; rcor=49; rNcor=62; rlogoDP=68; rNIcor=39; rNsEucl=42; rSSD=54; rNSW=49; rank_mean=51.857; match_rank=40
a 0 0 0 0 251 343 463 828 855 644 61 150 259 283 0
c 0 0 0 0 264 186 85 68 62 216 27 269 174 262 0
g 0 0 0 0 257 254 129 24 1 54 860 207 307 227 0
t 0 0 0 0 228 217 323 81 82 86 52 374 259 227 0
|
gw1.385.26.1_M0663_1.02_CISBP_shift4 (gw1.385.26.1_M0663_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/gw1.385.26.1_M0663_1.02_CISBP_shift4.png) |
0.810 |
0.520 |
2.295 |
0.511 |
0.905 |
1.449 |
0.919 |
54 |
65 |
67 |
41 |
43 |
56 |
50 |
53.714 |
42 |
; oligos_5-7nt_m4 versus gw1.385.26.1_M0663_1.02_CISBP; m=13/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=53.7143; ----vrwAAaGydm-
; cor=0.810; Ncor=0.520; logoDP=2.295; NIcor=0.511; NsEucl=0.905; SSD=1.449; NSW=0.919; rcor=54; rNcor=65; rlogoDP=67; rNIcor=41; rNsEucl=43; rSSD=56; rNSW=50; rank_mean=53.714; match_rank=42
a 0 0 0 0 25 34 46 83 86 64 6 15 26 28 0
c 0 0 0 0 26 19 9 7 6 22 3 27 17 26 0
g 0 0 0 0 26 25 13 2 0 5 86 21 31 23 0
t 0 0 0 0 23 22 32 8 8 9 5 37 26 23 0
|
ATDOF2.4_M0648_1.02_CISBP_shift5 (ATDOF2.4_M0648_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATDOF2.4_M0648_1.02_CISBP_shift5.png) |
0.885 |
0.477 |
1.922 |
0.471 |
0.905 |
0.885 |
0.937 |
27 |
97 |
88 |
62 |
47 |
31 |
36 |
55.429 |
44 |
; oligos_5-7nt_m4 versus ATDOF2.4_M0648_1.02_CISBP; m=14/37; ncol2=7; w=7; offset=5; strand=D; shift=5; score=55.4286; -----awAAaGt---
; cor=0.885; Ncor=0.477; logoDP=1.922; NIcor=0.471; NsEucl=0.905; SSD=0.885; NSW=0.937; rcor=27; rNcor=97; rlogoDP=88; rNIcor=62; rNsEucl=47; rSSD=31; rNSW=36; rank_mean=55.429; match_rank=44
a 0 0 0 0 0 38 43 81 81 66 8 18 0 0 0
c 0 0 0 0 0 17 8 7 7 24 8 24 0 0 0
g 0 0 0 0 0 23 13 2 0 2 76 21 0 0 0
t 0 0 0 0 0 22 36 10 12 8 8 37 0 0 0
|
DOF2.4_MA0982.1_JASPAR_shift5 (DOF2.4_MA0982.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.4_MA0982.1_JASPAR_shift5.png) |
0.883 |
0.475 |
1.928 |
0.470 |
0.905 |
0.893 |
0.936 |
30 |
101 |
85 |
63 |
50 |
33 |
37 |
57.000 |
49 |
; oligos_5-7nt_m4 versus DOF2.4_MA0982.1_JASPAR; m=15/37; ncol2=7; w=7; offset=5; strand=D; shift=5; score= 57; -----awAAmGt---
; cor=0.883; Ncor=0.475; logoDP=1.928; NIcor=0.470; NsEucl=0.905; SSD=0.893; NSW=0.936; rcor=30; rNcor=101; rlogoDP=85; rNIcor=63; rNsEucl=50; rSSD=33; rNSW=37; rank_mean=57.000; match_rank=49
a 0 0 0 0 0 381 426 807 815 658 81 177 0 0 0
c 0 0 0 0 0 171 90 71 66 252 73 242 0 0 0
g 0 0 0 0 0 233 127 18 1 16 762 210 0 0 0
t 0 0 0 0 0 215 356 104 118 75 84 371 0 0 0
|
DOF1.8_MA0981.1_JASPAR_shift4 (DOF1.8_MA0981.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF1.8_MA0981.1_JASPAR_shift4.png) |
0.800 |
0.515 |
2.129 |
0.505 |
0.903 |
1.520 |
0.916 |
59 |
69 |
73 |
43 |
60 |
71 |
62 |
62.429 |
63 |
; oligos_5-7nt_m4 versus DOF1.8_MA0981.1_JASPAR; m=16/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=62.4286; ----vawAAaGtdr-
; cor=0.800; Ncor=0.515; logoDP=2.129; NIcor=0.505; NsEucl=0.903; SSD=1.520; NSW=0.916; rcor=59; rNcor=69; rlogoDP=73; rNIcor=43; rNsEucl=60; rSSD=71; rNSW=62; rank_mean=62.429; match_rank=63
a 0 0 0 0 251 321 415 812 831 658 65 170 268 288 0
c 0 0 0 0 259 197 100 72 64 233 23 241 189 209 0
g 0 0 0 0 256 250 135 38 3 27 846 231 270 269 0
t 0 0 0 0 234 233 350 77 102 83 65 359 273 234 0
|
PBF_M01829_TRANSFAC_rc_shift6 (PBF_M01829_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01829_TRANSFAC_rc_shift6.png) |
0.907 |
0.419 |
0.341 |
-0.109 |
0.911 |
0.572 |
0.952 |
16 |
120 |
122 |
120 |
33 |
11 |
16 |
62.571 |
64 |
; oligos_5-7nt_m4 versus PBF_M01829_TRANSFAC_rc; m=17/37; ncol2=6; w=6; offset=6; strand=R; shift=6; score=62.5714; ------wAAAGk---
; cor=0.907; Ncor=0.419; logoDP=0.341; NIcor=-0.109; NsEucl=0.911; SSD=0.572; NSW=0.952; rcor=16; rNcor=120; rlogoDP=122; rNIcor=120; rNsEucl=33; rSSD=11; rNSW=16; rank_mean=62.571; match_rank=64
a 0 0 0 0 0 0 7 16 16 16 0 1 0 0 0
c 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0
g 0 0 0 0 0 0 1 0 0 0 16 7 0 0 0
t 0 0 0 0 0 0 6 0 0 0 0 6 0 0 0
|
e_gw1.170.52.1_M0659_1.02_CISBP_shift4 (e_gw1.170.52.1_M0659_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.170.52.1_M0659_1.02_CISBP_shift4.png) |
0.794 |
0.510 |
2.616 |
0.498 |
0.903 |
1.512 |
0.916 |
68 |
77 |
58 |
52 |
57 |
69 |
59 |
62.857 |
65 |
; oligos_5-7nt_m4 versus e_gw1.170.52.1_M0659_1.02_CISBP; m=18/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=62.8571; ----srwAAAGydr-
; cor=0.794; Ncor=0.510; logoDP=2.616; NIcor=0.498; NsEucl=0.903; SSD=1.512; NSW=0.916; rcor=68; rNcor=77; rlogoDP=58; rNIcor=52; rNsEucl=57; rSSD=69; rNSW=59; rank_mean=62.857; match_rank=65
a 0 0 0 0 24 30 40 89 89 72 7 18 27 28 0
c 0 0 0 0 27 22 11 4 5 20 2 26 19 22 0
g 0 0 0 0 25 26 17 1 0 3 84 23 27 27 0
t 0 0 0 0 24 22 32 6 6 5 7 33 27 23 0
|
PHYPADRAFT_140773_MA0987.1_JASPAR_shift4 (PHYPADRAFT_140773_MA0987.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_140773_MA0987.1_JASPAR_shift4.png) |
0.794 |
0.510 |
2.596 |
0.498 |
0.903 |
1.512 |
0.916 |
67 |
76 |
59 |
53 |
59 |
70 |
60 |
63.429 |
66 |
; oligos_5-7nt_m4 versus PHYPADRAFT_140773_MA0987.1_JASPAR; m=19/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=63.4286; ----srwAAAGydr-
; cor=0.794; Ncor=0.510; logoDP=2.596; NIcor=0.498; NsEucl=0.903; SSD=1.512; NSW=0.916; rcor=67; rNcor=76; rlogoDP=59; rNIcor=53; rNsEucl=59; rSSD=70; rNSW=60; rank_mean=63.429; match_rank=66
a 0 0 0 0 243 302 396 888 892 715 72 182 271 280 0
c 0 0 0 0 266 215 111 43 46 205 22 258 193 218 0
g 0 0 0 0 253 260 173 10 1 28 839 229 271 272 0
t 0 0 0 0 238 222 321 60 61 52 67 331 265 229 0
|
AT1G64620_M0647_1.02_CISBP_shift4 (AT1G64620_M0647_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT1G64620_M0647_1.02_CISBP_shift4.png) |
0.799 |
0.514 |
2.134 |
0.503 |
0.903 |
1.528 |
0.915 |
62 |
71 |
72 |
46 |
61 |
74 |
63 |
64.143 |
68 |
; oligos_5-7nt_m4 versus AT1G64620_M0647_1.02_CISBP; m=20/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=64.1429; ----vrwAAaGtdr-
; cor=0.799; Ncor=0.514; logoDP=2.134; NIcor=0.503; NsEucl=0.903; SSD=1.528; NSW=0.915; rcor=62; rNcor=71; rlogoDP=72; rNIcor=46; rNsEucl=61; rSSD=74; rNSW=63; rank_mean=64.143; match_rank=68
a 0 0 0 0 25 32 41 81 83 66 7 17 27 29 0
c 0 0 0 0 26 20 10 7 7 23 2 24 19 21 0
g 0 0 0 0 26 25 14 4 0 3 85 23 27 27 0
t 0 0 0 0 23 23 35 8 10 8 6 36 27 23 0
|
DAG2_DAG2_ArabidopsisPBM_shift4 (DAG2_DAG2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DAG2_DAG2_ArabidopsisPBM_shift4.png) |
0.783 |
0.503 |
4.911 |
0.508 |
0.898 |
1.669 |
0.907 |
82 |
84 |
11 |
42 |
74 |
90 |
80 |
66.143 |
70 |
; oligos_5-7nt_m4 versus DAG2_DAG2_ArabidopsisPBM; m=21/37; ncol2=10; w=9; offset=4; strand=D; shift=4; score=66.1429; ----sAwAARGTgr-
; cor=0.783; Ncor=0.503; logoDP=4.911; NIcor=0.508; NsEucl=0.898; SSD=1.669; NSW=0.907; rcor=82; rNcor=84; rlogoDP=11; rNIcor=42; rNsEucl=74; rSSD=90; rNSW=80; rank_mean=66.143; match_rank=70
a 0 0 0 0 16 76 60 99 98 74 0 1 24 39 0
c 0 0 0 0 42 2 0 0 0 0 0 20 4 17 0
g 0 0 0 0 31 18 1 0 1 26 98 6 56 31 0
t 0 0 0 0 11 4 39 1 1 0 2 73 16 13 0
|
DOF5.6_MA0983.1_JASPAR_shift4 (DOF5.6_MA0983.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_MA0983.1_JASPAR_shift4.png) |
0.799 |
0.492 |
3.128 |
0.475 |
0.894 |
1.440 |
0.910 |
61 |
89 |
43 |
60 |
85 |
55 |
72 |
66.429 |
71 |
; oligos_5-7nt_m4 versus DOF5.6_MA0983.1_JASPAR; m=22/37; ncol2=8; w=8; offset=4; strand=D; shift=4; score=66.4286; ----vawAAmGt---
; cor=0.799; Ncor=0.492; logoDP=3.128; NIcor=0.475; NsEucl=0.894; SSD=1.440; NSW=0.910; rcor=61; rNcor=89; rlogoDP=43; rNIcor=60; rNsEucl=85; rSSD=55; rNSW=72; rank_mean=66.429; match_rank=71
a 0 0 0 0 254 364 432 955 928 613 50 152 0 0 0
c 0 0 0 0 257 170 84 35 40 308 28 247 0 0 0
g 0 0 0 0 262 227 108 1 1 56 884 213 0 0 0
t 0 0 0 0 228 239 376 10 32 24 38 388 0 0 0
|
ATGRP2B_M0583_1.02_CISBP_rc_shift1 (ATGRP2B_M0583_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATGRP2B_M0583_1.02_CISBP_rc_shift1.png) |
0.861 |
0.530 |
1.720 |
-0.000 |
0.898 |
1.331 |
0.917 |
37 |
54 |
98 |
103 |
77 |
45 |
56 |
67.143 |
72 |
; oligos_5-7nt_m4 versus ATGRP2B_M0583_1.02_CISBP_rc; m=23/37; ncol2=8; w=8; offset=1; strand=R; shift=1; score=67.1429; -AAwAAAAm------
; cor=0.861; Ncor=0.530; logoDP=1.720; NIcor=-0.000; NsEucl=0.898; SSD=1.331; NSW=0.917; rcor=37; rNcor=54; rlogoDP=98; rNIcor=103; rNsEucl=77; rSSD=45; rNSW=56; rank_mean=67.143; match_rank=72
a 0 100 100 33 100 100 100 100 67 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 67 0 0 0 0 0 0 0 0 0 0 0
|
DOF5.6_M0657_1.02_CISBP_shift4 (DOF5.6_M0657_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_M0657_1.02_CISBP_shift4.png) |
0.795 |
0.489 |
3.163 |
0.473 |
0.893 |
1.461 |
0.909 |
66 |
91 |
42 |
61 |
86 |
57 |
75 |
68.286 |
75 |
; oligos_5-7nt_m4 versus DOF5.6_M0657_1.02_CISBP; m=24/37; ncol2=8; w=8; offset=4; strand=D; shift=4; score=68.2857; ----vawAAmGy---
; cor=0.795; Ncor=0.489; logoDP=3.163; NIcor=0.473; NsEucl=0.893; SSD=1.461; NSW=0.909; rcor=66; rNcor=91; rlogoDP=42; rNIcor=61; rNsEucl=86; rSSD=57; rNSW=75; rank_mean=68.286; match_rank=75
a 0 0 0 0 25 36 43 96 93 61 5 15 0 0 0
c 0 0 0 0 26 17 8 3 4 31 3 25 0 0 0
g 0 0 0 0 26 23 11 0 0 6 88 21 0 0 0
t 0 0 0 0 23 24 38 1 3 2 4 39 0 0 0
|
HMGIY_M01800_TRANSFAC_rc_shift4 (HMGIY_M01800_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HMGIY_M01800_TRANSFAC_rc_shift4.png) |
0.899 |
0.415 |
1.020 |
-0.121 |
0.903 |
0.682 |
0.943 |
18 |
124 |
112 |
122 |
62 |
15 |
27 |
68.571 |
76 |
; oligos_5-7nt_m4 versus HMGIY_M01800_TRANSFAC_rc; m=25/37; ncol2=6; w=6; offset=4; strand=R; shift=4; score=68.5714; ----AAAWww-----
; cor=0.899; Ncor=0.415; logoDP=1.020; NIcor=-0.121; NsEucl=0.903; SSD=0.682; NSW=0.943; rcor=18; rNcor=124; rlogoDP=112; rNIcor=122; rNsEucl=62; rSSD=15; rNSW=27; rank_mean=68.571; match_rank=76
a 0 0 0 0 9 13 11 10 7 9 0 0 0 0 0
c 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
g 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0
t 0 0 0 0 1 1 3 4 6 5 0 0 0 0 0
|
DOF5.7_DOF5.7_ArabidopsisPBM_shift5 (DOF5.7_DOF5.7_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.7_DOF5.7_ArabidopsisPBM_shift5.png) |
0.781 |
0.416 |
2.490 |
0.416 |
0.897 |
1.350 |
0.916 |
90 |
122 |
61 |
83 |
80 |
48 |
61 |
77.857 |
90 |
; oligos_5-7nt_m4 versus DOF5.7_DOF5.7_ArabidopsisPBM; m=26/37; ncol2=10; w=8; offset=5; strand=D; shift=5; score=77.8571; -----raAAArrkgr
; cor=0.781; Ncor=0.416; logoDP=2.490; NIcor=0.416; NsEucl=0.897; SSD=1.350; NSW=0.916; rcor=90; rNcor=122; rlogoDP=61; rNIcor=83; rNsEucl=80; rSSD=48; rNSW=61; rank_mean=77.857; match_rank=90
a 0 0 0 0 0 39 45 68 97 90 36 48 10 18 29
c 0 0 0 0 0 21 9 1 0 0 4 6 19 21 22
g 0 0 0 0 0 27 22 7 1 8 59 44 46 41 31
t 0 0 0 0 0 13 24 24 2 2 1 2 25 20 18
|
DOF5.7_MA0984.1_JASPAR_shift4 (DOF5.7_MA0984.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.7_MA0984.1_JASPAR_shift4.png) |
0.774 |
0.476 |
2.876 |
0.455 |
0.888 |
1.592 |
0.900 |
97 |
100 |
49 |
73 |
90 |
81 |
90 |
82.857 |
94 |
; oligos_5-7nt_m4 versus DOF5.7_MA0984.1_JASPAR; m=27/37; ncol2=8; w=8; offset=4; strand=D; shift=4; score=82.8571; ----aAAArrgg---
; cor=0.774; Ncor=0.476; logoDP=2.876; NIcor=0.455; NsEucl=0.888; SSD=1.592; NSW=0.900; rcor=97; rNcor=100; rlogoDP=49; rNIcor=73; rNsEucl=90; rSSD=81; rNSW=90; rank_mean=82.857; match_rank=94
a 0 0 0 0 448 684 970 899 363 485 102 174 0 0 0
c 0 0 0 0 86 12 4 3 42 61 191 215 0 0 0
g 0 0 0 0 224 61 10 79 589 443 460 408 0 0 0
t 0 0 0 0 241 243 16 19 6 11 247 204 0 0 0
|
e_gw1.149.93.1_M0658_1.02_CISBP_shift4 (e_gw1.149.93.1_M0658_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.149.93.1_M0658_1.02_CISBP_shift4.png) |
0.809 |
0.498 |
1.179 |
0.490 |
0.885 |
1.681 |
0.895 |
55 |
87 |
107 |
56 |
93 |
92 |
94 |
83.429 |
95 |
; oligos_5-7nt_m4 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=28/37; ncol2=8; w=8; offset=4; strand=D; shift=4; score=83.4286; ----vrwaAmGy---
; cor=0.809; Ncor=0.498; logoDP=1.179; NIcor=0.490; NsEucl=0.885; SSD=1.681; NSW=0.895; rcor=55; rNcor=87; rlogoDP=107; rNIcor=56; rNsEucl=93; rSSD=92; rNSW=94; rank_mean=83.429; match_rank=95
a 0 0 0 0 26 33 40 65 71 57 8 17 0 0 0
c 0 0 0 0 26 20 14 13 10 25 8 26 0 0 0
g 0 0 0 0 26 25 16 8 5 0 76 22 0 0 0
t 0 0 0 0 22 22 30 14 14 18 8 35 0 0 0
|
TATA_BINDING_TBP_1vtl_E_3D-footprint_shift3 (TATA_BINDING_TBP_1vtl_E_3D-footprint) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TATA_BINDING_TBP_1vtl_E_3D-footprint_shift3.png) |
0.781 |
0.481 |
5.594 |
0.463 |
0.876 |
1.977 |
0.876 |
89 |
95 |
4 |
70 |
113 |
117 |
117 |
86.429 |
98 |
; oligos_5-7nt_m4 versus TATA_BINDING_TBP_1vtl_E_3D-footprint; m=29/37; ncol2=8; w=8; offset=3; strand=D; shift=3; score=86.4286; ---TATAAaAG----
; cor=0.781; Ncor=0.481; logoDP=5.594; NIcor=0.463; NsEucl=0.876; SSD=1.977; NSW=0.876; rcor=89; rNcor=95; rlogoDP=4; rNIcor=70; rNsEucl=113; rSSD=117; rNSW=117; rank_mean=86.429; match_rank=98
a 0 0 0 0 96 0 96 72 60 96 12 0 0 0 0
c 0 0 0 0 0 0 0 12 12 0 12 0 0 0 0
g 0 0 0 0 0 0 0 12 12 0 72 0 0 0 0
t 0 0 0 96 0 96 0 0 12 0 0 0 0 0 0
|
TMO6_M0654_1.02_CISBP_shift4 (TMO6_M0654_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TMO6_M0654_1.02_CISBP_shift4.png) |
0.800 |
0.431 |
2.086 |
0.419 |
0.876 |
1.511 |
0.892 |
60 |
116 |
75 |
81 |
112 |
68 |
98 |
87.143 |
100 |
; oligos_5-7nt_m4 versus TMO6_M0654_1.02_CISBP; m=30/37; ncol2=7; w=7; offset=4; strand=D; shift=4; score=87.1429; ----vawAAmG----
; cor=0.800; Ncor=0.431; logoDP=2.086; NIcor=0.419; NsEucl=0.876; SSD=1.511; NSW=0.892; rcor=60; rNcor=116; rlogoDP=75; rNIcor=81; rNsEucl=112; rSSD=68; rNSW=98; rank_mean=87.143; match_rank=100
a 0 0 0 0 25 33 40 84 85 61 7 0 0 0 0
c 0 0 0 0 25 21 13 6 8 33 4 0 0 0 0
g 0 0 0 0 26 23 14 2 0 1 77 0 0 0 0
t 0 0 0 0 24 23 33 8 7 5 12 0 0 0 0
|
fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift4 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift4.png) |
0.808 |
0.497 |
0.950 |
0.498 |
0.882 |
1.775 |
0.889 |
56 |
88 |
114 |
54 |
98 |
101 |
104 |
87.857 |
101 |
; oligos_5-7nt_m4 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=31/37; ncol2=8; w=8; offset=4; strand=D; shift=4; score=87.8571; ----sawaamGt---
; cor=0.808; Ncor=0.497; logoDP=0.950; NIcor=0.498; NsEucl=0.882; SSD=1.775; NSW=0.889; rcor=56; rNcor=88; rlogoDP=114; rNIcor=54; rNsEucl=98; rSSD=101; rNSW=104; rank_mean=87.857; match_rank=101
a 0 0 0 0 24 36 41 62 65 55 13 17 0 0 0
c 0 0 0 0 26 19 15 14 12 29 9 24 0 0 0
g 0 0 0 0 27 23 15 9 7 0 71 21 0 0 0
t 0 0 0 0 23 22 29 15 16 16 7 38 0 0 0
|
DOF5.3_MA1071.1_JASPAR_shift4 (DOF5.3_MA1071.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.3_MA1071.1_JASPAR_shift4.png) |
0.798 |
0.429 |
2.077 |
0.418 |
0.875 |
1.526 |
0.891 |
65 |
117 |
76 |
82 |
114 |
73 |
99 |
89.429 |
106 |
; oligos_5-7nt_m4 versus DOF5.3_MA1071.1_JASPAR; m=32/37; ncol2=7; w=7; offset=4; strand=D; shift=4; score=89.4286; ----gawAAmG----
; cor=0.798; Ncor=0.429; logoDP=2.077; NIcor=0.418; NsEucl=0.875; SSD=1.526; NSW=0.891; rcor=65; rNcor=117; rlogoDP=76; rNIcor=82; rNsEucl=114; rSSD=73; rNSW=99; rank_mean=89.429; match_rank=106
a 0 0 0 0 247 327 396 842 850 611 66 0 0 0 0
c 0 0 0 0 247 213 128 61 79 329 52 0 0 0 0
g 0 0 0 0 262 228 146 17 0 14 767 0 0 0 0
t 0 0 0 0 244 233 331 81 70 47 116 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift3 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift3.png) |
0.810 |
0.499 |
0.485 |
-0.201 |
0.885 |
1.698 |
0.894 |
53 |
86 |
121 |
126 |
94 |
94 |
96 |
95.714 |
114 |
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc; m=33/37; ncol2=8; w=8; offset=3; strand=R; shift=3; score=95.7143; ---TACAAaAG----
; cor=0.810; Ncor=0.499; logoDP=0.485; NIcor=-0.201; NsEucl=0.885; SSD=1.698; NSW=0.894; rcor=53; rNcor=86; rlogoDP=121; rNIcor=126; rNsEucl=94; rSSD=94; rNSW=96; rank_mean=95.714; match_rank=114
a 0 0 0 8 96 0 96 96 61 96 8 0 0 0 0
c 0 0 0 0 0 88 0 0 8 0 8 0 0 0 0
g 0 0 0 10 0 0 0 0 19 0 72 0 0 0 0
t 0 0 0 78 0 8 0 0 8 0 8 0 0 0 0
|
ADOF2_M0649_1.02_CISBP_shift4 (ADOF2_M0649_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ADOF2_M0649_1.02_CISBP_shift4.png) |
0.754 |
0.464 |
1.739 |
0.457 |
0.881 |
1.800 |
0.888 |
120 |
105 |
96 |
72 |
99 |
102 |
106 |
100.000 |
118 |
; oligos_5-7nt_m4 versus ADOF2_M0649_1.02_CISBP; m=34/37; ncol2=8; w=8; offset=4; strand=D; shift=4; score= 100; ----srwAAmGy---
; cor=0.754; Ncor=0.464; logoDP=1.739; NIcor=0.457; NsEucl=0.881; SSD=1.800; NSW=0.888; rcor=120; rNcor=105; rlogoDP=96; rNIcor=72; rNsEucl=99; rSSD=102; rNSW=106; rank_mean=100.000; match_rank=118
a 0 0 0 0 24 31 35 81 80 50 11 20 0 0 0
c 0 0 0 0 26 20 15 7 9 40 3 26 0 0 0
g 0 0 0 0 27 25 17 4 2 2 78 21 0 0 0
t 0 0 0 0 23 24 33 8 9 8 8 33 0 0 0
|
_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc_shift3 (_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc_shift3.png) |
0.774 |
0.476 |
1.550 |
-0.074 |
0.873 |
2.071 |
0.871 |
94 |
98 |
103 |
115 |
119 |
120 |
120 |
109.857 |
123 |
; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1cdw_A_3D-footprint_rc; m=35/37; ncol2=8; w=8; offset=3; strand=R; shift=3; score=109.857; ---TATAAaAg----
; cor=0.774; Ncor=0.476; logoDP=1.550; NIcor=-0.074; NsEucl=0.873; SSD=2.071; NSW=0.871; rcor=94; rNcor=98; rlogoDP=103; rNIcor=115; rNsEucl=119; rSSD=120; rNSW=120; rank_mean=109.857; match_rank=123
a 0 0 0 0 96 0 96 96 54 96 13 0 0 0 0
c 0 0 0 0 0 0 0 0 13 0 16 0 0 0 0
g 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0
t 0 0 0 96 0 96 0 0 16 0 13 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift3 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift3.png) |
0.774 |
0.476 |
1.545 |
-0.075 |
0.873 |
2.071 |
0.871 |
94 |
98 |
104 |
116 |
119 |
120 |
120 |
110.143 |
124 |
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc; m=36/37; ncol2=8; w=8; offset=3; strand=R; shift=3; score=110.143; ---TATAAaAg----
; cor=0.774; Ncor=0.476; logoDP=1.545; NIcor=-0.075; NsEucl=0.873; SSD=2.071; NSW=0.871; rcor=94; rNcor=98; rlogoDP=104; rNIcor=116; rNsEucl=119; rSSD=120; rNSW=120; rank_mean=110.143; match_rank=124
a 0 0 0 0 96 0 96 96 54 96 13 0 0 0 0
c 0 0 0 0 0 0 0 0 13 0 16 0 0 0 0
g 0 0 0 0 0 0 0 0 16 0 54 0 0 0 0
t 0 0 0 96 0 96 0 0 13 0 13 0 0 0 0
|
_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift3 (_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift3.png) |
0.775 |
0.477 |
1.594 |
-0.077 |
0.872 |
2.081 |
0.870 |
93 |
96 |
100 |
117 |
122 |
123 |
123 |
110.571 |
125 |
; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_AB_3D-footprint_rc; m=37/37; ncol2=8; w=8; offset=3; strand=R; shift=3; score=110.571; ---TATAAaAg----
; cor=0.775; Ncor=0.477; logoDP=1.594; NIcor=-0.077; NsEucl=0.872; SSD=2.081; NSW=0.870; rcor=93; rNcor=96; rlogoDP=100; rNIcor=117; rNsEucl=122; rSSD=123; rNSW=123; rank_mean=110.571; match_rank=125
a 0 0 0 0 96 0 96 96 48 96 16 0 0 0 0
c 0 0 0 0 0 0 0 0 16 0 16 0 0 0 0
g 0 0 0 0 0 0 0 0 16 0 64 0 0 0 0
t 0 0 0 96 0 96 0 0 16 0 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m3_shift0 (oligos_5-7nt_m3) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m3_shift0.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m3; m=0 (reference); ncol1=12; shift=0; ncol=15; whATAAAAAGdw---
; Alignment reference
a 82 79 207 0 214 221 230 225 221 22 70 83 0 0 0
c 36 62 14 9 8 9 4 2 10 18 40 39 0 0 0
g 46 39 9 18 11 9 4 7 5 180 65 52 0 0 0
t 80 64 14 217 11 5 6 10 8 24 69 70 0 0 0
|
Dof_M01136_TRANSFAC_shift2 (Dof_M01136_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof_M01136_TRANSFAC_shift2.png) |
0.845 |
0.650 |
5.192 |
0.625 |
0.921 |
1.262 |
0.937 |
38 |
10 |
8 |
5 |
15 |
44 |
35 |
22.143 |
6 |
; oligos_5-7nt_m3 versus Dof_M01136_TRANSFAC; m=1/39; ncol2=11; w=10; offset=2; strand=D; shift=2; score=22.1429; --amaaAAAGwar--
; cor=0.845; Ncor=0.650; logoDP=5.192; NIcor=0.625; NsEucl=0.921; SSD=1.262; NSW=0.937; rcor=38; rNcor=10; rlogoDP=8; rNIcor=5; rNsEucl=15; rSSD=44; rNSW=35; rank_mean=22.143; match_rank=6
a 0 0 4 3 6 6 9 9 9 0 3 5 3 0 0
c 0 0 2 3 0 0 0 0 0 0 1 1 2 0 0
g 0 0 2 1 2 2 0 0 0 9 2 2 3 0 0
t 0 0 1 2 1 1 0 0 0 0 3 1 1 0 0
|
cdf3_M0651_1.02_CISBP_shift4 (cdf3_M0651_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/cdf3_M0651_1.02_CISBP_shift4.png) |
0.889 |
0.547 |
4.141 |
0.535 |
0.925 |
0.714 |
0.955 |
21 |
43 |
35 |
26 |
6 |
18 |
11 |
22.857 |
7 |
; oligos_5-7nt_m3 versus cdf3_M0651_1.02_CISBP; m=2/39; ncol2=9; w=8; offset=4; strand=D; shift=4; score=22.8571; ----awAAAGygm--
; cor=0.889; Ncor=0.547; logoDP=4.141; NIcor=0.535; NsEucl=0.925; SSD=0.714; NSW=0.955; rcor=21; rNcor=43; rlogoDP=35; rNIcor=26; rNsEucl=6; rSSD=18; rNSW=11; rank_mean=22.857; match_rank=7
a 0 0 0 0 45 61 100 99 88 2 7 22 29 0 0
c 0 0 0 0 14 3 0 0 3 1 29 10 34 0 0
g 0 0 0 0 22 7 0 0 8 96 16 50 17 0 0
t 0 0 0 0 19 29 0 1 1 1 48 18 20 0 0
|
CDF3_MA0974.1_JASPAR_shift4 (CDF3_MA0974.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF3_MA0974.1_JASPAR_shift4.png) |
0.887 |
0.546 |
4.097 |
0.534 |
0.925 |
0.724 |
0.955 |
24 |
45 |
37 |
29 |
7 |
19 |
12 |
24.714 |
8 |
; oligos_5-7nt_m3 versus CDF3_MA0974.1_JASPAR; m=3/39; ncol2=9; w=8; offset=4; strand=D; shift=4; score=24.7143; ----awAAAGygm--
; cor=0.887; Ncor=0.546; logoDP=4.097; NIcor=0.534; NsEucl=0.925; SSD=0.724; NSW=0.955; rcor=24; rNcor=45; rlogoDP=37; rNIcor=29; rNsEucl=7; rSSD=19; rNSW=12; rank_mean=24.714; match_rank=8
a 0 0 0 0 447 607 994 989 880 19 70 222 286 0 0
c 0 0 0 0 143 29 3 5 27 7 291 102 343 0 0
g 0 0 0 0 220 65 1 0 83 969 160 495 169 0 0
t 0 0 0 0 191 298 2 6 10 6 479 180 202 0 0
|
DOF2.5_MA0977.1_JASPAR_shift4 (DOF2.5_MA0977.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.5_MA0977.1_JASPAR_shift4.png) |
0.868 |
0.579 |
4.337 |
0.576 |
0.916 |
0.911 |
0.943 |
34 |
26 |
28 |
11 |
25 |
35 |
29 |
26.857 |
9 |
; oligos_5-7nt_m3 versus DOF2.5_MA0977.1_JASPAR; m=4/39; ncol2=8; w=8; offset=4; strand=D; shift=4; score=26.8571; ----AwAARGTg---
; cor=0.868; Ncor=0.579; logoDP=4.337; NIcor=0.576; NsEucl=0.916; SSD=0.911; NSW=0.943; rcor=34; rNcor=26; rlogoDP=28; rNIcor=11; rNsEucl=25; rSSD=35; rNSW=29; rank_mean=26.857; match_rank=9
a 0 0 0 0 756 598 990 986 744 4 8 238 0 0 0
c 0 0 0 0 26 1 1 1 1 1 198 44 0 0 0
g 0 0 0 0 182 12 4 8 254 977 65 557 0 0 0
t 0 0 0 0 36 389 5 6 1 18 729 160 0 0 0
|
CDF2_M0653_1.02_CISBP_shift3 (CDF2_M0653_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_M0653_1.02_CISBP_shift3.png) |
0.835 |
0.578 |
4.149 |
0.574 |
0.914 |
1.187 |
0.934 |
41 |
27 |
34 |
12 |
26 |
40 |
38 |
31.143 |
13 |
; oligos_5-7nt_m3 versus CDF2_M0653_1.02_CISBP; m=5/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=31.1429; ---maWAAAGyrh--
; cor=0.835; Ncor=0.578; logoDP=4.149; NIcor=0.574; NsEucl=0.914; SSD=1.187; NSW=0.934; rcor=41; rNcor=27; rlogoDP=34; rNIcor=12; rNsEucl=26; rSSD=40; rNSW=38; rank_mean=31.143; match_rank=13
a 0 0 0 33 61 69 98 98 87 2 5 33 30 0 0
c 0 0 0 28 9 2 1 1 3 0 29 8 28 0 0
g 0 0 0 23 15 4 0 0 8 97 15 39 16 0 0
t 0 0 0 16 15 25 1 1 2 1 51 20 26 0 0
|
Dof3_MA0021.1_JASPAR_shift6 (Dof3_MA0021.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof3_MA0021.1_JASPAR_shift6.png) |
0.932 |
0.466 |
4.536 |
0.484 |
0.919 |
0.469 |
0.961 |
6 |
103 |
24 |
59 |
20 |
6 |
6 |
32.000 |
15 |
; oligos_5-7nt_m3 versus Dof3_MA0021.1_JASPAR; m=6/39; ncol2=6; w=6; offset=6; strand=D; shift=6; score= 32; ------AAAGyv---
; cor=0.932; Ncor=0.466; logoDP=4.536; NIcor=0.484; NsEucl=0.919; SSD=0.469; NSW=0.961; rcor=6; rNcor=103; rlogoDP=24; rNIcor=59; rNsEucl=20; rSSD=6; rNSW=6; rank_mean=32.000; match_rank=15
a 0 0 0 0 0 0 21 21 21 0 0 6 0 0 0
c 0 0 0 0 0 0 0 0 0 0 10 6 0 0 0
g 0 0 0 0 0 0 0 0 0 21 3 9 0 0 0
t 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0
|
CDF2_MA0973.1_JASPAR_shift3 (CDF2_MA0973.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_MA0973.1_JASPAR_shift3.png) |
0.832 |
0.576 |
4.135 |
0.573 |
0.914 |
1.207 |
0.933 |
43 |
29 |
36 |
13 |
27 |
41 |
39 |
32.571 |
19 |
; oligos_5-7nt_m3 versus CDF2_MA0973.1_JASPAR; m=7/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=32.5714; ---maWAAAGyrh--
; cor=0.832; Ncor=0.576; logoDP=4.135; NIcor=0.573; NsEucl=0.914; SSD=1.207; NSW=0.933; rcor=43; rNcor=29; rlogoDP=36; rNIcor=13; rNsEucl=27; rSSD=41; rNSW=39; rank_mean=32.571; match_rank=19
a 0 0 0 334 608 693 980 979 868 17 53 328 299 0 0
c 0 0 0 284 92 16 10 10 29 7 295 77 282 0 0
g 0 0 0 235 150 41 4 2 81 969 154 395 155 0 0
t 0 0 0 148 150 250 5 9 22 6 498 200 264 0 0
|
Dof2_MA0020.1_JASPAR_shift6 (Dof2_MA0020.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof2_MA0020.1_JASPAR_shift6.png) |
0.931 |
0.465 |
4.534 |
0.470 |
0.918 |
0.478 |
0.960 |
7 |
104 |
25 |
64 |
22 |
8 |
8 |
34.000 |
22 |
; oligos_5-7nt_m3 versus Dof2_MA0020.1_JASPAR; m=8/39; ncol2=6; w=6; offset=6; strand=D; shift=6; score= 34; ------AAAGcm---
; cor=0.931; Ncor=0.465; logoDP=4.534; NIcor=0.470; NsEucl=0.918; SSD=0.478; NSW=0.960; rcor=7; rNcor=104; rlogoDP=25; rNIcor=64; rNsEucl=22; rSSD=8; rNSW=8; rank_mean=34.000; match_rank=22
a 0 0 0 0 0 0 21 21 21 0 3 7 0 0 0
c 0 0 0 0 0 0 0 0 0 0 14 6 0 0 0
g 0 0 0 0 0 0 0 0 0 21 2 3 0 0 0
t 0 0 0 0 0 0 0 0 0 0 2 5 0 0 0
|
PBF_M01130_TRANSFAC_shift5 (PBF_M01130_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01130_TRANSFAC_shift5.png) |
0.908 |
0.454 |
4.765 |
0.448 |
0.909 |
0.599 |
0.950 |
15 |
111 |
18 |
75 |
34 |
12 |
21 |
40.857 |
25 |
; oligos_5-7nt_m3 versus PBF_M01130_TRANSFAC; m=9/39; ncol2=6; w=6; offset=5; strand=D; shift=5; score=40.8571; -----wAAAGg----
; cor=0.908; Ncor=0.454; logoDP=4.765; NIcor=0.448; NsEucl=0.909; SSD=0.599; NSW=0.950; rcor=15; rNcor=111; rlogoDP=18; rNIcor=75; rNsEucl=34; rSSD=12; rNSW=21; rank_mean=40.857; match_rank=25
a 0 0 0 0 0 6 11 11 11 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
g 0 0 0 0 0 1 0 0 0 11 7 0 0 0 0
t 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0
|
ATGRP2B_M0583_1.02_CISBP_rc_shift1 (ATGRP2B_M0583_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATGRP2B_M0583_1.02_CISBP_rc_shift1.png) |
0.897 |
0.598 |
1.979 |
-0.014 |
0.912 |
0.997 |
0.938 |
19 |
20 |
83 |
107 |
32 |
36 |
34 |
47.286 |
33 |
; oligos_5-7nt_m3 versus ATGRP2B_M0583_1.02_CISBP_rc; m=10/39; ncol2=8; w=8; offset=1; strand=R; shift=1; score=47.2857; -AAwAAAAm------
; cor=0.897; Ncor=0.598; logoDP=1.979; NIcor=-0.014; NsEucl=0.912; SSD=0.997; NSW=0.938; rcor=19; rNcor=20; rlogoDP=83; rNIcor=107; rNsEucl=32; rSSD=36; rNSW=34; rank_mean=47.286; match_rank=33
a 0 100 100 33 100 100 100 100 67 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 67 0 0 0 0 0 0 0 0 0 0 0
|
PHYPADRAFT_153324_MA0989.1_JASPAR_shift3 (PHYPADRAFT_153324_MA0989.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_153324_MA0989.1_JASPAR_shift3.png) |
0.787 |
0.590 |
2.422 |
0.565 |
0.905 |
1.461 |
0.919 |
79 |
21 |
63 |
14 |
46 |
58 |
51 |
47.429 |
34 |
; oligos_5-7nt_m3 versus PHYPADRAFT_153324_MA0989.1_JASPAR; m=11/39; ncol2=9; w=9; offset=3; strand=D; shift=3; score=47.4286; ---vrwAAaGyd---
; cor=0.787; Ncor=0.590; logoDP=2.422; NIcor=0.565; NsEucl=0.905; SSD=1.461; NSW=0.919; rcor=79; rNcor=21; rlogoDP=63; rNIcor=14; rNsEucl=46; rSSD=58; rNSW=51; rank_mean=47.429; match_rank=34
a 0 0 0 253 334 482 861 926 672 71 139 285 0 0 0
c 0 0 0 264 193 71 62 36 147 27 288 158 0 0 0
g 0 0 0 261 255 118 13 0 52 898 195 297 0 0 0
t 0 0 0 222 218 330 65 38 129 5 378 260 0 0 0
|
e_gw1.392.16.1_M0660_1.02_CISBP_shift3 (e_gw1.392.16.1_M0660_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.392.16.1_M0660_1.02_CISBP_shift3.png) |
0.783 |
0.587 |
2.436 |
0.563 |
0.904 |
1.480 |
0.918 |
81 |
22 |
62 |
18 |
52 |
62 |
54 |
50.143 |
35 |
; oligos_5-7nt_m3 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=12/39; ncol2=9; w=9; offset=3; strand=D; shift=3; score=50.1429; ---vrwAAaGyd---
; cor=0.783; Ncor=0.587; logoDP=2.436; NIcor=0.563; NsEucl=0.904; SSD=1.480; NSW=0.918; rcor=81; rNcor=22; rlogoDP=62; rNIcor=18; rNsEucl=52; rSSD=62; rNSW=54; rank_mean=50.143; match_rank=35
a 0 0 0 26 33 48 86 93 67 7 13 28 0 0 0
c 0 0 0 26 19 7 6 3 15 3 29 16 0 0 0
g 0 0 0 26 26 12 2 0 5 90 20 30 0 0 0
t 0 0 0 22 22 33 6 4 13 0 38 26 0 0 0
|
ATDOF2.4_M0648_1.02_CISBP_shift4 (ATDOF2.4_M0648_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATDOF2.4_M0648_1.02_CISBP_shift4.png) |
0.875 |
0.510 |
1.772 |
0.499 |
0.906 |
0.864 |
0.938 |
31 |
78 |
95 |
50 |
39 |
27 |
32 |
50.286 |
36 |
; oligos_5-7nt_m3 versus ATDOF2.4_M0648_1.02_CISBP; m=13/39; ncol2=7; w=7; offset=4; strand=D; shift=4; score=50.2857; ----awAAaGt----
; cor=0.875; Ncor=0.510; logoDP=1.772; NIcor=0.499; NsEucl=0.906; SSD=0.864; NSW=0.938; rcor=31; rNcor=78; rlogoDP=95; rNIcor=50; rNsEucl=39; rSSD=27; rNSW=32; rank_mean=50.286; match_rank=36
a 0 0 0 0 38 43 81 81 66 8 18 0 0 0 0
c 0 0 0 0 17 8 7 7 24 8 24 0 0 0 0
g 0 0 0 0 23 13 2 0 2 76 21 0 0 0 0
t 0 0 0 0 22 36 10 12 8 8 37 0 0 0 0
|
DOF2.4_MA0982.1_JASPAR_shift4 (DOF2.4_MA0982.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.4_MA0982.1_JASPAR_shift4.png) |
0.873 |
0.509 |
1.779 |
0.498 |
0.906 |
0.870 |
0.938 |
32 |
79 |
94 |
51 |
41 |
28 |
33 |
51.143 |
38 |
; oligos_5-7nt_m3 versus DOF2.4_MA0982.1_JASPAR; m=14/39; ncol2=7; w=7; offset=4; strand=D; shift=4; score=51.1429; ----awAAmGt----
; cor=0.873; Ncor=0.509; logoDP=1.779; NIcor=0.498; NsEucl=0.906; SSD=0.870; NSW=0.938; rcor=32; rNcor=79; rlogoDP=94; rNIcor=51; rNsEucl=41; rSSD=28; rNSW=33; rank_mean=51.143; match_rank=38
a 0 0 0 0 381 426 807 815 658 81 177 0 0 0 0
c 0 0 0 0 171 90 71 66 252 73 242 0 0 0 0
g 0 0 0 0 233 127 18 1 16 762 210 0 0 0 0
t 0 0 0 0 215 356 104 118 75 84 371 0 0 0 0
|
PHYPADRAFT_38837_MA1022.1_JASPAR_shift3 (PHYPADRAFT_38837_MA1022.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_38837_MA1022.1_JASPAR_shift3.png) |
0.789 |
0.546 |
1.974 |
0.526 |
0.905 |
1.476 |
0.918 |
75 |
44 |
84 |
32 |
49 |
60 |
52 |
56.571 |
45 |
; oligos_5-7nt_m3 versus PHYPADRAFT_38837_MA1022.1_JASPAR; m=15/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=56.5714; ---vrwAAaGydm--
; cor=0.789; Ncor=0.546; logoDP=1.974; NIcor=0.526; NsEucl=0.905; SSD=1.476; NSW=0.918; rcor=75; rNcor=44; rlogoDP=84; rNIcor=32; rNsEucl=49; rSSD=60; rNSW=52; rank_mean=56.571; match_rank=45
a 0 0 0 251 343 463 828 855 644 61 150 259 283 0 0
c 0 0 0 264 186 85 68 62 216 27 269 174 262 0 0
g 0 0 0 257 254 129 24 1 54 860 207 307 227 0 0
t 0 0 0 228 217 323 81 82 86 52 374 259 227 0 0
|
SED_M01128_TRANSFAC_rc_shift5 (SED_M01128_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SED_M01128_TRANSFAC_rc_shift5.png) |
0.910 |
0.425 |
0.230 |
-0.048 |
0.924 |
0.564 |
0.960 |
11 |
119 |
126 |
113 |
9 |
10 |
9 |
56.714 |
47 |
; oligos_5-7nt_m3 versus SED_M01128_TRANSFAC_rc; m=16/39; ncol2=10; w=7; offset=5; strand=R; shift=5; score=56.7143; -----dAAAGbddrb
; cor=0.910; Ncor=0.425; logoDP=0.230; NIcor=-0.048; NsEucl=0.924; SSD=0.564; NSW=0.960; rcor=11; rNcor=119; rlogoDP=126; rNIcor=113; rNsEucl=9; rSSD=10; rNSW=9; rank_mean=56.714; match_rank=47
a 0 0 0 0 0 4 8 8 8 0 0 2 2 5 0
c 0 0 0 0 0 0 0 0 0 0 2 1 1 0 3
g 0 0 0 0 0 2 0 0 0 8 4 3 2 3 2
t 0 0 0 0 0 2 0 0 0 0 2 2 3 0 3
|
e_gw1.170.52.1_M0659_1.02_CISBP_shift3 (e_gw1.170.52.1_M0659_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.170.52.1_M0659_1.02_CISBP_shift3.png) |
0.782 |
0.542 |
2.374 |
0.521 |
0.904 |
1.495 |
0.917 |
83 |
47 |
64 |
34 |
54 |
64 |
55 |
57.286 |
50 |
; oligos_5-7nt_m3 versus e_gw1.170.52.1_M0659_1.02_CISBP; m=17/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=57.2857; ---srwAAAGydr--
; cor=0.782; Ncor=0.542; logoDP=2.374; NIcor=0.521; NsEucl=0.904; SSD=1.495; NSW=0.917; rcor=83; rNcor=47; rlogoDP=64; rNIcor=34; rNsEucl=54; rSSD=64; rNSW=55; rank_mean=57.286; match_rank=50
a 0 0 0 24 30 40 89 89 72 7 18 27 28 0 0
c 0 0 0 27 22 11 4 5 20 2 26 19 22 0 0
g 0 0 0 25 26 17 1 0 3 84 23 27 27 0 0
t 0 0 0 24 22 32 6 6 5 7 33 27 23 0 0
|
gw1.385.26.1_M0663_1.02_CISBP_shift3 (gw1.385.26.1_M0663_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/gw1.385.26.1_M0663_1.02_CISBP_shift3.png) |
0.788 |
0.546 |
1.996 |
0.525 |
0.904 |
1.479 |
0.918 |
78 |
46 |
82 |
33 |
51 |
61 |
53 |
57.714 |
51 |
; oligos_5-7nt_m3 versus gw1.385.26.1_M0663_1.02_CISBP; m=18/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=57.7143; ---vrwAAaGydm--
; cor=0.788; Ncor=0.546; logoDP=1.996; NIcor=0.525; NsEucl=0.904; SSD=1.479; NSW=0.918; rcor=78; rNcor=46; rlogoDP=82; rNIcor=33; rNsEucl=51; rSSD=61; rNSW=53; rank_mean=57.714; match_rank=51
a 0 0 0 25 34 46 83 86 64 6 15 26 28 0 0
c 0 0 0 26 19 9 7 6 22 3 27 17 26 0 0
g 0 0 0 26 25 13 2 0 5 86 21 31 23 0 0
t 0 0 0 23 22 32 8 8 9 5 37 26 23 0 0
|
DOF5.7_DOF5.7_ArabidopsisPBM_shift4 (DOF5.7_DOF5.7_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.7_DOF5.7_ArabidopsisPBM_shift4.png) |
0.811 |
0.463 |
2.560 |
0.461 |
0.907 |
1.117 |
0.930 |
52 |
106 |
60 |
71 |
38 |
38 |
41 |
58.000 |
52 |
; oligos_5-7nt_m3 versus DOF5.7_DOF5.7_ArabidopsisPBM; m=19/39; ncol2=10; w=8; offset=4; strand=D; shift=4; score= 58; ----raAAArrkgr-
; cor=0.811; Ncor=0.463; logoDP=2.560; NIcor=0.461; NsEucl=0.907; SSD=1.117; NSW=0.930; rcor=52; rNcor=106; rlogoDP=60; rNIcor=71; rNsEucl=38; rSSD=38; rNSW=41; rank_mean=58.000; match_rank=52
a 0 0 0 0 39 45 68 97 90 36 48 10 18 29 0
c 0 0 0 0 21 9 1 0 0 4 6 19 21 22 0
g 0 0 0 0 27 22 7 1 8 59 44 46 41 31 0
t 0 0 0 0 13 24 24 2 2 1 2 25 20 18 0
|
PHYPADRAFT_140773_MA0987.1_JASPAR_shift3 (PHYPADRAFT_140773_MA0987.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_140773_MA0987.1_JASPAR_shift3.png) |
0.781 |
0.541 |
2.357 |
0.520 |
0.904 |
1.503 |
0.916 |
88 |
48 |
65 |
35 |
55 |
66 |
57 |
59.143 |
54 |
; oligos_5-7nt_m3 versus PHYPADRAFT_140773_MA0987.1_JASPAR; m=20/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=59.1429; ---srwAAAGydr--
; cor=0.781; Ncor=0.541; logoDP=2.357; NIcor=0.520; NsEucl=0.904; SSD=1.503; NSW=0.916; rcor=88; rNcor=48; rlogoDP=65; rNIcor=35; rNsEucl=55; rSSD=66; rNSW=57; rank_mean=59.143; match_rank=54
a 0 0 0 243 302 396 888 892 715 72 182 271 280 0 0
c 0 0 0 266 215 111 43 46 205 22 258 193 218 0 0
g 0 0 0 253 260 173 10 1 28 839 229 271 272 0 0
t 0 0 0 238 222 321 60 61 52 67 331 265 229 0 0
|
PBF_M01829_TRANSFAC_rc_shift5 (PBF_M01829_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01829_TRANSFAC_rc_shift5.png) |
0.908 |
0.454 |
0.280 |
-0.114 |
0.912 |
0.560 |
0.953 |
14 |
110 |
125 |
121 |
31 |
9 |
14 |
60.571 |
57 |
; oligos_5-7nt_m3 versus PBF_M01829_TRANSFAC_rc; m=21/39; ncol2=6; w=6; offset=5; strand=R; shift=5; score=60.5714; -----wAAAGk----
; cor=0.908; Ncor=0.454; logoDP=0.280; NIcor=-0.114; NsEucl=0.912; SSD=0.560; NSW=0.953; rcor=14; rNcor=110; rlogoDP=125; rNIcor=121; rNsEucl=31; rSSD=9; rNSW=14; rank_mean=60.571; match_rank=57
a 0 0 0 0 0 7 16 16 16 0 1 0 0 0 0
c 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0
g 0 0 0 0 0 1 0 0 0 16 7 0 0 0 0
t 0 0 0 0 0 6 0 0 0 0 6 0 0 0 0
|
PBF_M00355_TRANSFAC_shift2 (PBF_M00355_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M00355_TRANSFAC_shift2.png) |
0.761 |
0.586 |
4.909 |
0.563 |
0.902 |
1.903 |
0.905 |
114 |
23 |
12 |
16 |
63 |
112 |
85 |
60.714 |
58 |
; oligos_5-7nt_m3 versus PBF_M00355_TRANSFAC; m=22/39; ncol2=11; w=10; offset=2; strand=D; shift=2; score=60.7143; --wwdwAAAGhgm--
; cor=0.761; Ncor=0.586; logoDP=4.909; NIcor=0.563; NsEucl=0.902; SSD=1.903; NSW=0.905; rcor=114; rNcor=23; rlogoDP=12; rNIcor=16; rNsEucl=63; rSSD=112; rNSW=85; rank_mean=60.714; match_rank=58
a 0 0 7 7 4 9 16 16 16 0 4 3 7 0 0
c 0 0 3 2 3 1 0 0 0 0 7 3 5 0 0
g 0 0 2 1 4 0 0 0 0 16 1 9 3 0 0
t 0 0 4 6 5 6 0 0 0 0 4 1 1 0 0
|
DOF1.8_MA0981.1_JASPAR_shift3 (DOF1.8_MA0981.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF1.8_MA0981.1_JASPAR_shift3.png) |
0.779 |
0.539 |
1.856 |
0.519 |
0.902 |
1.544 |
0.914 |
91 |
49 |
90 |
37 |
64 |
79 |
64 |
67.714 |
74 |
; oligos_5-7nt_m3 versus DOF1.8_MA0981.1_JASPAR; m=23/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=67.7143; ---vawAAaGtdr--
; cor=0.779; Ncor=0.539; logoDP=1.856; NIcor=0.519; NsEucl=0.902; SSD=1.544; NSW=0.914; rcor=91; rNcor=49; rlogoDP=90; rNIcor=37; rNsEucl=64; rSSD=79; rNSW=64; rank_mean=67.714; match_rank=74
a 0 0 0 251 321 415 812 831 658 65 170 268 288 0 0
c 0 0 0 259 197 100 72 64 233 23 241 189 209 0 0
g 0 0 0 256 250 135 38 3 27 846 231 270 269 0 0
t 0 0 0 234 233 350 77 102 83 65 359 273 234 0 0
|
AT1G64620_M0647_1.02_CISBP_shift3 (AT1G64620_M0647_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT1G64620_M0647_1.02_CISBP_shift3.png) |
0.776 |
0.537 |
1.857 |
0.517 |
0.902 |
1.558 |
0.913 |
92 |
50 |
89 |
38 |
66 |
80 |
66 |
68.714 |
77 |
; oligos_5-7nt_m3 versus AT1G64620_M0647_1.02_CISBP; m=24/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score=68.7143; ---vrwAAaGtdr--
; cor=0.776; Ncor=0.537; logoDP=1.857; NIcor=0.517; NsEucl=0.902; SSD=1.558; NSW=0.913; rcor=92; rNcor=50; rlogoDP=89; rNIcor=38; rNsEucl=66; rSSD=80; rNSW=66; rank_mean=68.714; match_rank=77
a 0 0 0 25 32 41 81 83 66 7 17 27 29 0 0
c 0 0 0 26 20 10 7 7 23 2 24 19 21 0 0
g 0 0 0 26 25 14 4 0 3 85 23 27 27 0 0
t 0 0 0 23 23 35 8 10 8 6 36 27 23 0 0
|
DAG2_DAG2_ArabidopsisPBM_shift3 (DAG2_DAG2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DAG2_DAG2_ArabidopsisPBM_shift3.png) |
0.766 |
0.530 |
4.370 |
0.528 |
0.896 |
1.755 |
0.903 |
110 |
53 |
27 |
31 |
82 |
98 |
89 |
70.000 |
79 |
; oligos_5-7nt_m3 versus DAG2_DAG2_ArabidopsisPBM; m=25/39; ncol2=10; w=9; offset=3; strand=D; shift=3; score= 70; ---sAwAARGTgr--
; cor=0.766; Ncor=0.530; logoDP=4.370; NIcor=0.528; NsEucl=0.896; SSD=1.755; NSW=0.903; rcor=110; rNcor=53; rlogoDP=27; rNIcor=31; rNsEucl=82; rSSD=98; rNSW=89; rank_mean=70.000; match_rank=79
a 0 0 0 16 76 60 99 98 74 0 1 24 39 0 0
c 0 0 0 42 2 0 0 0 0 0 20 4 17 0 0
g 0 0 0 31 18 1 0 1 26 98 6 56 31 0 0
t 0 0 0 11 4 39 1 1 0 2 73 16 13 0 0
|
DOF5.7_MA0984.1_JASPAR_shift4 (DOF5.7_MA0984.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.7_MA0984.1_JASPAR_shift4.png) |
0.761 |
0.507 |
2.762 |
0.502 |
0.896 |
1.380 |
0.914 |
115 |
82 |
55 |
47 |
81 |
49 |
65 |
70.571 |
80 |
; oligos_5-7nt_m3 versus DOF5.7_MA0984.1_JASPAR; m=26/39; ncol2=8; w=8; offset=4; strand=D; shift=4; score=70.5714; ----aAAArrgg---
; cor=0.761; Ncor=0.507; logoDP=2.762; NIcor=0.502; NsEucl=0.896; SSD=1.380; NSW=0.914; rcor=115; rNcor=82; rlogoDP=55; rNIcor=47; rNsEucl=81; rSSD=49; rNSW=65; rank_mean=70.571; match_rank=80
a 0 0 0 0 448 684 970 899 363 485 102 174 0 0 0
c 0 0 0 0 86 12 4 3 42 61 191 215 0 0 0
g 0 0 0 0 224 61 10 79 589 443 460 408 0 0 0
t 0 0 0 0 241 243 16 19 6 11 247 204 0 0 0
|
DOF5.6_MA0983.1_JASPAR_shift3 (DOF5.6_MA0983.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_MA0983.1_JASPAR_shift3.png) |
0.773 |
0.515 |
2.788 |
0.489 |
0.891 |
1.526 |
0.905 |
100 |
68 |
53 |
57 |
87 |
72 |
86 |
74.714 |
84 |
; oligos_5-7nt_m3 versus DOF5.6_MA0983.1_JASPAR; m=27/39; ncol2=8; w=8; offset=3; strand=D; shift=3; score=74.7143; ---vawAAmGt----
; cor=0.773; Ncor=0.515; logoDP=2.788; NIcor=0.489; NsEucl=0.891; SSD=1.526; NSW=0.905; rcor=100; rNcor=68; rlogoDP=53; rNIcor=57; rNsEucl=87; rSSD=72; rNSW=86; rank_mean=74.714; match_rank=84
a 0 0 0 254 364 432 955 928 613 50 152 0 0 0 0
c 0 0 0 257 170 84 35 40 308 28 247 0 0 0 0
g 0 0 0 262 227 108 1 1 56 884 213 0 0 0 0
t 0 0 0 228 239 376 10 32 24 38 388 0 0 0 0
|
DOF5.6_M0657_1.02_CISBP_shift3 (DOF5.6_M0657_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_M0657_1.02_CISBP_shift3.png) |
0.771 |
0.514 |
2.830 |
0.488 |
0.890 |
1.535 |
0.904 |
102 |
70 |
50 |
58 |
88 |
75 |
87 |
75.714 |
86 |
; oligos_5-7nt_m3 versus DOF5.6_M0657_1.02_CISBP; m=28/39; ncol2=8; w=8; offset=3; strand=D; shift=3; score=75.7143; ---vawAAmGy----
; cor=0.771; Ncor=0.514; logoDP=2.830; NIcor=0.488; NsEucl=0.890; SSD=1.535; NSW=0.904; rcor=102; rNcor=70; rlogoDP=50; rNIcor=58; rNsEucl=88; rSSD=75; rNSW=87; rank_mean=75.714; match_rank=86
a 0 0 0 25 36 43 96 93 61 5 15 0 0 0 0
c 0 0 0 26 17 8 3 4 31 3 25 0 0 0 0
g 0 0 0 26 23 11 0 0 6 88 21 0 0 0 0
t 0 0 0 23 24 38 1 3 2 4 39 0 0 0 0
|
PEND_M02233_TRANSFAC_rc_shift1 (PEND_M02233_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PEND_M02233_TRANSFAC_rc_shift1.png) |
0.773 |
0.644 |
1.636 |
0.047 |
0.903 |
1.866 |
0.907 |
99 |
11 |
99 |
97 |
58 |
110 |
83 |
79.571 |
92 |
; oligos_5-7nt_m3 versus PEND_M02233_TRANSFAC_rc; m=29/39; ncol2=10; w=10; offset=1; strand=R; shift=1; score=79.5714; -mATAAGAAgT----
; cor=0.773; Ncor=0.644; logoDP=1.636; NIcor=0.047; NsEucl=0.903; SSD=1.866; NSW=0.907; rcor=99; rNcor=11; rlogoDP=99; rNIcor=97; rNsEucl=58; rSSD=110; rNSW=83; rank_mean=79.571; match_rank=92
a 0 21 35 1 39 38 4 34 39 10 2 0 0 0 0
c 0 14 0 2 1 2 2 4 2 7 8 0 0 0 0
g 0 5 3 7 0 2 33 0 0 19 2 0 0 0 0
t 0 2 4 32 2 0 3 4 1 6 30 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc_shift1.png) |
0.793 |
0.529 |
3.012 |
0.132 |
0.880 |
1.841 |
0.885 |
70 |
55 |
45 |
93 |
100 |
105 |
107 |
82.143 |
93 |
; oligos_5-7nt_m3 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc; m=30/39; ncol2=8; w=8; offset=1; strand=R; shift=1; score=82.1429; -TATAAaAt------
; cor=0.793; Ncor=0.529; logoDP=3.012; NIcor=0.132; NsEucl=0.880; SSD=1.841; NSW=0.885; rcor=70; rNcor=55; rlogoDP=45; rNIcor=93; rNsEucl=100; rSSD=105; rNSW=107; rank_mean=82.143; match_rank=93
a 0 0 96 0 96 96 57 96 16 0 0 0 0 0 0
c 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0
g 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0
t 0 96 0 96 0 0 13 0 54 0 0 0 0 0 0
|
fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift3 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift3.png) |
0.786 |
0.524 |
0.826 |
0.512 |
0.883 |
1.765 |
0.890 |
80 |
61 |
116 |
40 |
97 |
99 |
103 |
85.143 |
96 |
; oligos_5-7nt_m3 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=31/39; ncol2=8; w=8; offset=3; strand=D; shift=3; score=85.1429; ---sawaamGt----
; cor=0.786; Ncor=0.524; logoDP=0.826; NIcor=0.512; NsEucl=0.883; SSD=1.765; NSW=0.890; rcor=80; rNcor=61; rlogoDP=116; rNIcor=40; rNsEucl=97; rSSD=99; rNSW=103; rank_mean=85.143; match_rank=96
a 0 0 0 24 36 41 62 65 55 13 17 0 0 0 0
c 0 0 0 26 19 15 14 12 29 9 24 0 0 0 0
g 0 0 0 27 23 15 9 7 0 71 21 0 0 0 0
t 0 0 0 23 22 29 15 16 16 7 38 0 0 0 0
|
_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc_shift1 (_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1cdw_A_3D-footprint_rc_shift1.png) |
0.781 |
0.521 |
2.984 |
0.124 |
0.877 |
1.937 |
0.879 |
84 |
63 |
47 |
94 |
106 |
113 |
113 |
88.571 |
104 |
; oligos_5-7nt_m3 versus _TATA_BINDING_TBP_1cdw_A_3D-footprint_rc; m=32/39; ncol2=8; w=8; offset=1; strand=R; shift=1; score=88.5714; -TATAAaAg------
; cor=0.781; Ncor=0.521; logoDP=2.984; NIcor=0.124; NsEucl=0.877; SSD=1.937; NSW=0.879; rcor=84; rNcor=63; rlogoDP=47; rNIcor=94; rNsEucl=106; rSSD=113; rNSW=113; rank_mean=88.571; match_rank=104
a 0 0 96 0 96 96 54 96 13 0 0 0 0 0 0
c 0 0 0 0 0 0 13 0 16 0 0 0 0 0 0
g 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0
t 0 96 0 96 0 0 16 0 13 0 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift1.png) |
0.781 |
0.521 |
2.984 |
0.124 |
0.877 |
1.937 |
0.879 |
85 |
64 |
46 |
95 |
107 |
114 |
114 |
89.286 |
105 |
; oligos_5-7nt_m3 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc; m=33/39; ncol2=8; w=8; offset=1; strand=R; shift=1; score=89.2857; -TATAAaAg------
; cor=0.781; Ncor=0.521; logoDP=2.984; NIcor=0.124; NsEucl=0.877; SSD=1.937; NSW=0.879; rcor=85; rNcor=64; rlogoDP=46; rNIcor=95; rNsEucl=107; rSSD=114; rNSW=114; rank_mean=89.286; match_rank=105
a 0 0 96 0 96 96 54 96 13 0 0 0 0 0 0
c 0 0 0 0 0 0 13 0 16 0 0 0 0 0 0
g 0 0 0 0 0 0 16 0 54 0 0 0 0 0 0
t 0 96 0 96 0 0 13 0 13 0 0 0 0 0 0
|
e_gw1.149.93.1_M0658_1.02_CISBP_shift3 (e_gw1.149.93.1_M0658_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.149.93.1_M0658_1.02_CISBP_shift3.png) |
0.770 |
0.513 |
1.012 |
0.498 |
0.883 |
1.748 |
0.891 |
103 |
72 |
113 |
55 |
96 |
97 |
100 |
90.857 |
109 |
; oligos_5-7nt_m3 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=34/39; ncol2=8; w=8; offset=3; strand=D; shift=3; score=90.8571; ---vrwaAmGy----
; cor=0.770; Ncor=0.513; logoDP=1.012; NIcor=0.498; NsEucl=0.883; SSD=1.748; NSW=0.891; rcor=103; rNcor=72; rlogoDP=113; rNIcor=55; rNsEucl=96; rSSD=97; rNSW=100; rank_mean=90.857; match_rank=109
a 0 0 0 26 33 40 65 71 57 8 17 0 0 0 0
c 0 0 0 26 20 14 13 10 25 8 26 0 0 0 0
g 0 0 0 26 25 16 8 5 0 76 22 0 0 0 0
t 0 0 0 22 22 30 14 14 18 8 35 0 0 0 0
|
TMO6_M0654_1.02_CISBP_shift3 (TMO6_M0654_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TMO6_M0654_1.02_CISBP_shift3.png) |
0.781 |
0.456 |
1.924 |
0.437 |
0.875 |
1.536 |
0.890 |
87 |
109 |
86 |
79 |
115 |
76 |
101 |
93.286 |
111 |
; oligos_5-7nt_m3 versus TMO6_M0654_1.02_CISBP; m=35/39; ncol2=7; w=7; offset=3; strand=D; shift=3; score=93.2857; ---vawAAmG-----
; cor=0.781; Ncor=0.456; logoDP=1.924; NIcor=0.437; NsEucl=0.875; SSD=1.536; NSW=0.890; rcor=87; rNcor=109; rlogoDP=86; rNIcor=79; rNsEucl=115; rSSD=76; rNSW=101; rank_mean=93.286; match_rank=111
a 0 0 0 25 33 40 84 85 61 7 0 0 0 0 0
c 0 0 0 25 21 13 6 8 33 4 0 0 0 0 0
g 0 0 0 26 23 14 2 0 1 77 0 0 0 0 0
t 0 0 0 24 23 33 8 7 5 12 0 0 0 0 0
|
DOF5.3_MA1071.1_JASPAR_shift3 (DOF5.3_MA1071.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.3_MA1071.1_JASPAR_shift3.png) |
0.781 |
0.456 |
1.922 |
0.437 |
0.875 |
1.537 |
0.890 |
86 |
108 |
87 |
80 |
116 |
77 |
102 |
93.714 |
112 |
; oligos_5-7nt_m3 versus DOF5.3_MA1071.1_JASPAR; m=36/39; ncol2=7; w=7; offset=3; strand=D; shift=3; score=93.7143; ---gawAAmG-----
; cor=0.781; Ncor=0.456; logoDP=1.922; NIcor=0.437; NsEucl=0.875; SSD=1.537; NSW=0.890; rcor=86; rNcor=108; rlogoDP=87; rNIcor=80; rNsEucl=116; rSSD=77; rNSW=102; rank_mean=93.714; match_rank=112
a 0 0 0 247 327 396 842 850 611 66 0 0 0 0 0
c 0 0 0 247 213 128 61 79 329 52 0 0 0 0 0
g 0 0 0 262 228 146 17 0 14 767 0 0 0 0 0
t 0 0 0 244 233 331 81 70 47 116 0 0 0 0 0
|
TATA_BINDING_TBP_1vtl_E_3D-footprint_shift1 (TATA_BINDING_TBP_1vtl_E_3D-footprint) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TATA_BINDING_TBP_1vtl_E_3D-footprint_shift1.png) |
0.753 |
0.502 |
5.267 |
0.469 |
0.871 |
2.143 |
0.866 |
124 |
85 |
6 |
66 |
125 |
125 |
125 |
93.714 |
113 |
; oligos_5-7nt_m3 versus TATA_BINDING_TBP_1vtl_E_3D-footprint; m=37/39; ncol2=8; w=8; offset=1; strand=D; shift=1; score=93.7143; -TATAAaAG------
; cor=0.753; Ncor=0.502; logoDP=5.267; NIcor=0.469; NsEucl=0.871; SSD=2.143; NSW=0.866; rcor=124; rNcor=85; rlogoDP=6; rNIcor=66; rNsEucl=125; rSSD=125; rNSW=125; rank_mean=93.714; match_rank=113
a 0 0 96 0 96 72 60 96 12 0 0 0 0 0 0
c 0 0 0 0 0 12 12 0 12 0 0 0 0 0 0
g 0 0 0 0 0 12 12 0 72 0 0 0 0 0 0
t 0 96 0 96 0 0 12 0 0 0 0 0 0 0 0
|
_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift1 (_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift1.png) |
0.768 |
0.512 |
2.940 |
0.112 |
0.873 |
2.072 |
0.871 |
106 |
74 |
48 |
96 |
121 |
122 |
122 |
98.429 |
115 |
; oligos_5-7nt_m3 versus _TATA_BINDING_TBP_1vol_AB_3D-footprint_rc; m=38/39; ncol2=8; w=8; offset=1; strand=R; shift=1; score=98.4286; -TATAAaAg------
; cor=0.768; Ncor=0.512; logoDP=2.940; NIcor=0.112; NsEucl=0.873; SSD=2.072; NSW=0.871; rcor=106; rNcor=74; rlogoDP=48; rNIcor=96; rNsEucl=121; rSSD=122; rNSW=122; rank_mean=98.429; match_rank=115
a 0 0 96 0 96 96 48 96 16 0 0 0 0 0 0
c 0 0 0 0 0 0 16 0 16 0 0 0 0 0 0
g 0 0 0 0 0 0 16 0 64 0 0 0 0 0 0
t 0 96 0 96 0 0 16 0 0 0 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift1 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift1.png) |
0.762 |
0.508 |
1.790 |
-0.001 |
0.874 |
2.030 |
0.873 |
113 |
80 |
93 |
104 |
117 |
118 |
118 |
106.143 |
122 |
; oligos_5-7nt_m3 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc; m=39/39; ncol2=8; w=8; offset=1; strand=R; shift=1; score=106.143; -AATAAaAg------
; cor=0.762; Ncor=0.508; logoDP=1.790; NIcor=-0.001; NsEucl=0.874; SSD=2.030; NSW=0.873; rcor=113; rNcor=80; rlogoDP=93; rNIcor=104; rNsEucl=117; rSSD=118; rNSW=118; rank_mean=106.143; match_rank=122
a 0 96 96 0 96 74 53 96 10 0 0 0 0 0 0
c 0 0 0 0 0 10 21 0 22 0 0 0 0 0 0
g 0 0 0 0 0 10 10 0 64 0 0 0 0 0 0
t 0 0 0 96 0 2 12 0 0 0 0 0 0 0 0
|