Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m1_shift4 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift4.png) |
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; oligos_5-7nt_m1; m=0 (reference); ncol1=14; shift=4; ncol=18; ----vrAAATATCTycwd
; Alignment reference
a 0 0 0 0 17 23 49 52 50 1 47 4 7 3 12 13 15 14
c 0 0 0 0 16 8 0 0 1 1 1 1 44 6 15 15 13 10
g 0 0 0 0 15 15 2 0 1 3 3 0 0 1 5 12 10 14
t 0 0 0 0 5 7 2 1 1 48 2 48 2 43 21 13 15 15
|
CCA1_CCA1_ArabidopsisPBM_shift5 (CCA1_CCA1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_CCA1_ArabidopsisPBM_shift5.png) |
0.987 |
0.705 |
8.672 |
0.704 |
0.969 |
0.191 |
0.990 |
2 |
13 |
6 |
11 |
2 |
2 |
2 |
5.429 |
1 |
; oligos_5-7nt_m1 versus CCA1_CCA1_ArabidopsisPBM; m=1/12; ncol2=10; w=10; offset=1; strand=D; shift=5; score= 5.4286; -----aAAATATCTt---
; cor=0.987; Ncor=0.705; logoDP=8.672; NIcor=0.704; NsEucl=0.969; SSD=0.191; NSW=0.990; rcor=2; rNcor=13; rlogoDP=6; rNIcor=11; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=5.429; match_rank=1
a 0 0 0 0 0 60 93 96 98 4 100 0 0 3 17 0 0 0
c 0 0 0 0 0 8 0 0 0 0 0 1 100 9 21 0 0 0
g 0 0 0 0 0 10 1 4 2 0 0 0 0 1 11 0 0 0
t 0 0 0 0 0 22 6 0 0 96 0 99 0 87 51 0 0 0
|
RVE1_RVE1_ArabidopsisPBM_shift5 (RVE1_RVE1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RVE1_RVE1_ArabidopsisPBM_shift5.png) |
0.976 |
0.697 |
7.901 |
0.701 |
0.963 |
0.268 |
0.987 |
3 |
14 |
10 |
12 |
3 |
3 |
3 |
6.857 |
2 |
; oligos_5-7nt_m1 versus RVE1_RVE1_ArabidopsisPBM; m=2/12; ncol2=10; w=10; offset=1; strand=D; shift=5; score= 6.8571; -----wAAATATCTk---
; cor=0.976; Ncor=0.697; logoDP=7.901; NIcor=0.701; NsEucl=0.963; SSD=0.268; NSW=0.987; rcor=3; rNcor=14; rlogoDP=10; rNIcor=12; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=6.857; match_rank=2
a 0 0 0 0 0 65 92 92 98 7 99 0 1 2 9 0 0 0
c 0 0 0 0 0 4 0 0 0 0 1 1 98 10 20 0 0 0
g 0 0 0 0 0 6 2 7 1 4 0 0 0 4 28 0 0 0
t 0 0 0 0 0 25 6 1 1 89 0 99 1 84 43 0 0 0
|
CCA1_MA0972.1_JASPAR_shift6 (CCA1_MA0972.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_MA0972.1_JASPAR_shift6.png) |
0.995 |
0.569 |
8.536 |
0.567 |
0.974 |
0.088 |
0.994 |
1 |
34 |
7 |
27 |
1 |
1 |
1 |
10.286 |
6 |
; oligos_5-7nt_m1 versus CCA1_MA0972.1_JASPAR; m=3/12; ncol2=8; w=8; offset=2; strand=D; shift=6; score=10.2857; ------AAATATCT----
; cor=0.995; Ncor=0.569; logoDP=8.536; NIcor=0.567; NsEucl=0.974; SSD=0.088; NSW=0.994; rcor=1; rNcor=34; rlogoDP=7; rNIcor=27; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=10.286; match_rank=6
a 0 0 0 0 0 0 934 960 985 35 992 1 5 21 0 0 0 0
c 0 0 0 0 0 0 1 1 4 0 5 12 991 91 0 0 0 0
g 0 0 0 0 0 0 10 37 10 5 1 1 0 14 0 0 0 0
t 0 0 0 0 0 0 54 2 1 960 2 986 4 874 0 0 0 0
|
CCA1_M01819_TRANSFAC_shift0 (CCA1_M01819_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_M01819_TRANSFAC_shift0.png) |
0.873 |
0.631 |
8.927 |
0.624 |
0.931 |
1.613 |
0.938 |
20 |
20 |
5 |
18 |
9 |
40 |
21 |
19.000 |
13 |
; oligos_5-7nt_m1 versus CCA1_M01819_TRANSFAC; m=4/12; ncol2=17; w=13; offset=-4; strand=D; shift=0; score= 19; smharAAAAwATCTAar-
; cor=0.873; Ncor=0.631; logoDP=8.927; NIcor=0.624; NsEucl=0.931; SSD=1.613; NSW=0.938; rcor=20; rNcor=20; rlogoDP=5; rNIcor=18; rNsEucl=9; rSSD=40; rNSW=21; rank_mean=19.000; match_rank=13
a 0 3 2 3 3 6 7 7 7 3 7 0 0 1 5 3 2 0
c 4 3 2 1 0 0 0 0 0 0 0 0 7 0 0 1 1 0
g 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 2 0
t 0 0 2 1 1 0 0 0 0 4 0 7 0 6 1 1 1 0
|
PK02532.1_M1303_1.02_CISBP_rc_shift6 (PK02532.1_M1303_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK02532.1_M1303_1.02_CISBP_rc_shift6.png) |
0.945 |
0.608 |
2.859 |
0.029 |
0.940 |
0.593 |
0.967 |
4 |
27 |
38 |
49 |
5 |
8 |
6 |
19.571 |
15 |
; oligos_5-7nt_m1 versus PK02532.1_M1303_1.02_CISBP_rc; m=5/12; ncol2=9; w=9; offset=2; strand=R; shift=6; score=19.5714; ------wAATATCTn---
; cor=0.945; Ncor=0.608; logoDP=2.859; NIcor=0.029; NsEucl=0.940; SSD=0.593; NSW=0.967; rcor=4; rNcor=27; rlogoDP=38; rNIcor=49; rNsEucl=5; rSSD=8; rNSW=6; rank_mean=19.571; match_rank=15
a 0 0 0 0 0 0 50 100 100 0 100 0 0 0 25 0 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 100 0 25 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0
t 0 0 0 0 0 0 50 0 0 100 0 100 0 100 25 0 0 0
|
EPR1_M1317_1.02_CISBP_rc_shift5 (EPR1_M1317_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/EPR1_M1317_1.02_CISBP_rc_shift5.png) |
0.926 |
0.595 |
2.171 |
0.086 |
0.934 |
0.713 |
0.960 |
7 |
28 |
40 |
48 |
7 |
9 |
9 |
21.143 |
16 |
; oligos_5-7nt_m1 versus EPR1_M1317_1.02_CISBP_rc; m=6/12; ncol2=9; w=9; offset=1; strand=R; shift=5; score=21.1429; -----waAaTATCt----
; cor=0.926; Ncor=0.595; logoDP=2.171; NIcor=0.086; NsEucl=0.934; SSD=0.713; NSW=0.960; rcor=7; rNcor=28; rlogoDP=40; rNIcor=48; rNsEucl=7; rSSD=9; rNSW=9; rank_mean=21.143; match_rank=16
a 0 0 0 0 0 35 52 68 67 19 98 1 2 17 0 0 0 0
c 0 0 0 0 0 16 9 9 8 2 0 1 92 19 0 0 0 0
g 0 0 0 0 0 20 15 9 18 7 1 0 1 12 0 0 0 0
t 0 0 0 0 0 29 24 14 7 72 1 98 5 52 0 0 0 0
|
PK08316.1_M1306_1.02_CISBP_shift5 (PK08316.1_M1306_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK08316.1_M1306_1.02_CISBP_shift5.png) |
0.883 |
0.631 |
2.053 |
0.602 |
0.919 |
1.326 |
0.934 |
19 |
19 |
43 |
22 |
21 |
34 |
27 |
26.429 |
22 |
; oligos_5-7nt_m1 versus PK08316.1_M1306_1.02_CISBP; m=7/12; ncol2=10; w=10; offset=1; strand=D; shift=5; score=26.4286; -----wwaawATCtw---
; cor=0.883; Ncor=0.631; logoDP=2.053; NIcor=0.602; NsEucl=0.919; SSD=1.326; NSW=0.934; rcor=19; rNcor=19; rlogoDP=43; rNIcor=22; rNsEucl=21; rSSD=34; rNSW=27; rank_mean=26.429; match_rank=22
a 0 0 0 0 0 29 42 52 56 26 88 10 9 20 26 0 0 0
c 0 0 0 0 0 20 15 17 12 4 0 5 80 21 22 0 0 0
g 0 0 0 0 0 23 17 16 20 12 5 5 7 18 24 0 0 0
t 0 0 0 0 0 28 26 15 12 58 7 80 4 41 28 0 0 0
|
LOC_Os08g06110_M1365_1.02_CISBP_rc_shift6 (LOC_Os08g06110_M1365_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LOC_Os08g06110_M1365_1.02_CISBP_rc_shift6.png) |
0.898 |
0.578 |
0.593 |
-0.048 |
0.924 |
0.924 |
0.949 |
11 |
31 |
53 |
52 |
12 |
15 |
14 |
26.857 |
23 |
; oligos_5-7nt_m1 versus LOC_Os08g06110_M1365_1.02_CISBP_rc; m=8/12; ncol2=9; w=9; offset=2; strand=R; shift=6; score=26.8571; ------aaaTATCtw---
; cor=0.898; Ncor=0.578; logoDP=0.593; NIcor=-0.048; NsEucl=0.924; SSD=0.924; NSW=0.949; rcor=11; rNcor=31; rlogoDP=53; rNIcor=52; rNsEucl=12; rSSD=15; rNSW=14; rank_mean=26.857; match_rank=23
a 0 0 0 0 0 0 45 57 62 19 99 0 1 13 25 0 0 0
c 0 0 0 0 0 0 12 16 9 1 0 1 96 19 24 0 0 0
g 0 0 0 0 0 0 21 13 22 8 0 0 0 12 23 0 0 0
t 0 0 0 0 0 0 22 14 7 72 1 99 3 56 28 0 0 0
|
ARR11_ARR11_3_ArabidopsisPBM_shift6 (ARR11_ARR11_3_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ARR11_ARR11_3_ArabidopsisPBM_shift6.png) |
0.796 |
0.569 |
3.823 |
0.532 |
0.908 |
1.699 |
0.915 |
36 |
33 |
30 |
32 |
33 |
46 |
37 |
35.286 |
33 |
; oligos_5-7nt_m1 versus ARR11_ARR11_3_ArabidopsisPBM; m=9/12; ncol2=10; w=10; offset=2; strand=D; shift=6; score=35.2857; ------wAAGATCTTk--
; cor=0.796; Ncor=0.569; logoDP=3.823; NIcor=0.532; NsEucl=0.908; SSD=1.699; NSW=0.915; rcor=36; rNcor=33; rlogoDP=30; rNIcor=32; rNsEucl=33; rSSD=46; rNSW=37; rank_mean=35.286; match_rank=33
a 0 0 0 0 0 0 35 68 84 5 95 2 20 8 14 22 0 0
c 0 0 0 0 0 0 13 7 2 2 1 2 73 7 12 20 0 0
g 0 0 0 0 0 0 22 11 6 73 2 1 2 2 6 30 0 0
t 0 0 0 0 0 0 30 14 8 20 2 95 5 83 68 28 0 0
|
RVE1_RVE1_2_ArabidopsisPBM_shift6 (RVE1_RVE1_2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RVE1_RVE1_2_ArabidopsisPBM_shift6.png) |
0.773 |
0.552 |
2.891 |
0.534 |
0.904 |
1.845 |
0.908 |
41 |
37 |
35 |
30 |
38 |
49 |
41 |
38.714 |
41 |
; oligos_5-7nt_m1 versus RVE1_RVE1_2_ArabidopsisPBM; m=10/12; ncol2=10; w=10; offset=2; strand=D; shift=6; score=38.7143; ------smatATCwaw--
; cor=0.773; Ncor=0.552; logoDP=2.891; NIcor=0.534; NsEucl=0.904; SSD=1.845; NSW=0.908; rcor=41; rNcor=37; rlogoDP=35; rNIcor=30; rNsEucl=38; rSSD=49; rNSW=41; rank_mean=38.714; match_rank=41
a 0 0 0 0 0 0 20 54 65 23 91 3 6 29 61 50 0 0
c 0 0 0 0 0 0 31 31 9 3 4 3 89 20 16 16 0 0
g 0 0 0 0 0 0 29 4 16 15 3 3 4 5 13 6 0 0
t 0 0 0 0 0 0 20 11 10 59 2 91 1 46 10 28 0 0
|
AHL20_AHL20_ArabidopsisPBM_shift6 (AHL20_AHL20_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AHL20_AHL20_ArabidopsisPBM_shift6.png) |
0.768 |
0.548 |
5.407 |
0.522 |
0.896 |
2.163 |
0.892 |
45 |
39 |
20 |
33 |
42 |
58 |
50 |
41.000 |
47 |
; oligos_5-7nt_m1 versus AHL20_AHL20_ArabidopsisPBM; m=11/12; ncol2=10; w=10; offset=2; strand=D; shift=6; score= 41; ------wAATATATTw--
; cor=0.768; Ncor=0.548; logoDP=5.407; NIcor=0.522; NsEucl=0.896; SSD=2.163; NSW=0.892; rcor=45; rNcor=39; rlogoDP=20; rNIcor=33; rNsEucl=42; rSSD=58; rNSW=50; rank_mean=41.000; match_rank=47
a 0 0 0 0 0 0 44 95 88 8 87 13 91 11 3 44 0 0
c 0 0 0 0 0 0 16 1 0 1 0 0 1 1 1 10 0 0
g 0 0 0 0 0 0 11 1 1 0 0 0 1 0 1 21 0 0
t 0 0 0 0 0 0 29 3 11 91 13 87 7 88 95 25 0 0
|
PRH_M1167_1.02_CISBP_shift8 (PRH_M1167_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PRH_M1167_1.02_CISBP_shift8.png) |
0.756 |
0.432 |
5.785 |
0.430 |
0.871 |
2.132 |
0.867 |
52 |
55 |
18 |
41 |
58 |
57 |
59 |
48.571 |
58 |
; oligos_5-7nt_m1 versus PRH_M1167_1.02_CISBP; m=12/12; ncol2=8; w=8; offset=4; strand=D; shift=8; score=48.5714; --------ATATATwA--
; cor=0.756; Ncor=0.432; logoDP=5.785; NIcor=0.430; NsEucl=0.871; SSD=2.132; NSW=0.867; rcor=52; rNcor=55; rlogoDP=18; rNIcor=41; rNsEucl=58; rSSD=57; rNSW=59; rank_mean=48.571; match_rank=58
a 0 0 0 0 0 0 0 0 100 0 100 0 100 14 50 80 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 100 0 100 0 86 50 20 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m3_shift2.png) |
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; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=11; --waAATCAwa
; Alignment reference
a 0 0 30 32 83 83 0 0 83 34 32
c 0 0 20 20 0 0 0 83 0 11 17
g 0 0 12 13 0 0 0 0 0 13 19
t 0 0 21 18 0 0 83 0 0 25 15
|
HAT3_M0848_1.02_CISBP_shift2 (HAT3_M0848_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HAT3_M0848_1.02_CISBP_shift2.png) |
0.929 |
0.826 |
4.614 |
0.844 |
0.933 |
0.571 |
0.964 |
6 |
1 |
26 |
1 |
8 |
7 |
7 |
8.000 |
3 |
; oligos_5-7nt_m3 versus HAT3_M0848_1.02_CISBP; m=1/19; ncol2=8; w=8; offset=0; strand=D; shift=2; score= 8; --syAATCAw-
; cor=0.929; Ncor=0.826; logoDP=4.614; NIcor=0.844; NsEucl=0.933; SSD=0.571; NSW=0.964; rcor=6; rNcor=1; rlogoDP=26; rNIcor=1; rNsEucl=8; rSSD=7; rNSW=7; rank_mean=8.000; match_rank=3
a 0 0 12 6 85 86 5 11 82 33 0
c 0 0 35 54 7 6 6 76 3 15 0
g 0 0 35 3 1 3 0 6 6 12 0
t 0 0 18 37 7 5 89 7 9 40 0
|
LOC_Os09g35910_M1108_1.02_CISBP_shift0 (LOC_Os09g35910_M1108_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LOC_Os09g35910_M1108_1.02_CISBP_shift0.png) |
0.936 |
0.681 |
6.767 |
0.688 |
0.939 |
0.476 |
0.970 |
5 |
15 |
14 |
13 |
6 |
5 |
5 |
9.000 |
4 |
; oligos_5-7nt_m3 versus LOC_Os09g35910_M1108_1.02_CISBP; m=2/19; ncol2=10; w=8; offset=-2; strand=D; shift=0; score= 9; rwyyAATCAw-
; cor=0.936; Ncor=0.681; logoDP=6.767; NIcor=0.688; NsEucl=0.939; SSD=0.476; NSW=0.970; rcor=5; rNcor=15; rlogoDP=14; rNIcor=13; rNsEucl=6; rSSD=5; rNSW=5; rank_mean=9.000; match_rank=4
a 30 28 11 5 87 96 1 1 79 40 0
c 22 23 37 64 5 3 0 96 3 17 0
g 25 23 19 2 2 0 0 1 10 12 0
t 23 26 33 29 6 1 99 2 8 31 0
|
ATHB-7_MA0954.1_JASPAR_shift2 (ATHB-7_MA0954.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB-7_MA0954.1_JASPAR_shift2.png) |
0.892 |
0.803 |
9.649 |
0.808 |
0.923 |
0.961 |
0.947 |
14 |
5 |
4 |
3 |
14 |
16 |
15 |
10.143 |
5 |
; oligos_5-7nt_m3 versus ATHB-7_MA0954.1_JASPAR; m=3/19; ncol2=10; w=9; offset=0; strand=D; shift=2; score=10.1429; --yCAATCAWt
; cor=0.892; Ncor=0.803; logoDP=9.649; NIcor=0.808; NsEucl=0.923; SSD=0.961; NSW=0.947; rcor=14; rNcor=5; rlogoDP=4; rNIcor=3; rNsEucl=14; rSSD=16; rNSW=15; rank_mean=10.143; match_rank=5
a 0 0 152 27 1000 1000 0 0 1000 291 183
c 0 0 338 828 0 0 0 1000 0 0 98
g 0 0 152 27 0 0 0 0 0 0 190
t 0 0 358 118 0 0 1000 0 0 709 528
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GRMZM2G038252_M1209_1.02_CISBP_shift2 (GRMZM2G038252_M1209_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/GRMZM2G038252_M1209_1.02_CISBP_shift2.png) |
0.898 |
0.799 |
7.704 |
0.800 |
0.922 |
0.772 |
0.952 |
10 |
7 |
11 |
9 |
16 |
11 |
11 |
10.714 |
7 |
; oligos_5-7nt_m3 versus GRMZM2G038252_M1209_1.02_CISBP; m=4/19; ncol2=8; w=8; offset=0; strand=D; shift=2; score=10.7143; --tCAATYAa-
; cor=0.898; Ncor=0.799; logoDP=7.704; NIcor=0.800; NsEucl=0.922; SSD=0.772; NSW=0.952; rcor=10; rNcor=7; rlogoDP=11; rNIcor=9; rNsEucl=16; rSSD=11; rNSW=11; rank_mean=10.714; match_rank=7
a 0 0 11 6 99 98 1 0 95 55 0
c 0 0 23 77 1 0 0 70 1 10 0
g 0 0 16 0 0 2 0 0 0 21 0
t 0 0 50 17 0 0 99 30 4 14 0
|
ATHB7_M0846_1.02_CISBP_shift2 (ATHB7_M0846_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB7_M0846_1.02_CISBP_shift2.png) |
0.891 |
0.802 |
9.649 |
0.807 |
0.923 |
0.967 |
0.946 |
15 |
6 |
3 |
6 |
15 |
17 |
16 |
11.143 |
8 |
; oligos_5-7nt_m3 versus ATHB7_M0846_1.02_CISBP; m=5/19; ncol2=10; w=9; offset=0; strand=D; shift=2; score=11.1429; --yCAATCAWt
; cor=0.891; Ncor=0.802; logoDP=9.649; NIcor=0.807; NsEucl=0.923; SSD=0.967; NSW=0.946; rcor=15; rNcor=6; rlogoDP=3; rNIcor=6; rNsEucl=15; rSSD=17; rNSW=16; rank_mean=11.143; match_rank=8
a 0 0 15 3 100 100 0 0 100 29 18
c 0 0 34 83 0 0 0 100 0 0 10
g 0 0 15 3 0 0 0 0 0 0 19
t 0 0 36 11 0 0 100 0 0 71 53
|
HAT1_MA1024.1_JASPAR_shift2 (HAT1_MA1024.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HAT1_MA1024.1_JASPAR_shift2.png) |
0.885 |
0.796 |
9.650 |
0.807 |
0.921 |
1.010 |
0.944 |
17 |
8 |
2 |
5 |
18 |
19 |
18 |
12.429 |
9 |
; oligos_5-7nt_m3 versus HAT1_MA1024.1_JASPAR; m=6/19; ncol2=10; w=9; offset=0; strand=D; shift=2; score=12.4286; --syAATCATk
; cor=0.885; Ncor=0.796; logoDP=9.650; NIcor=0.807; NsEucl=0.921; SSD=1.010; NSW=0.944; rcor=17; rNcor=8; rlogoDP=2; rNIcor=5; rNsEucl=18; rSSD=19; rNSW=18; rank_mean=12.429; match_rank=9
a 0 0 149 69 1000 1000 0 0 1000 98 101
c 0 0 374 506 0 0 0 1000 0 0 101
g 0 0 328 69 0 0 0 0 0 0 286
t 0 0 149 356 0 0 1000 0 0 902 512
|
HAT1_M0851_1.02_CISBP_shift2 (HAT1_M0851_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HAT1_M0851_1.02_CISBP_shift2.png) |
0.884 |
0.796 |
9.650 |
0.807 |
0.921 |
1.014 |
0.944 |
18 |
9 |
1 |
4 |
19 |
20 |
19 |
12.857 |
10 |
; oligos_5-7nt_m3 versus HAT1_M0851_1.02_CISBP; m=7/19; ncol2=10; w=9; offset=0; strand=D; shift=2; score=12.8571; --syAATCATk
; cor=0.884; Ncor=0.796; logoDP=9.650; NIcor=0.807; NsEucl=0.921; SSD=1.014; NSW=0.944; rcor=18; rNcor=9; rlogoDP=1; rNIcor=4; rNsEucl=19; rSSD=20; rNSW=19; rank_mean=12.857; match_rank=10
a 0 0 15 6 100 100 0 0 100 10 10
c 0 0 37 51 0 0 0 100 0 0 10
g 0 0 33 7 0 0 0 0 0 0 29
t 0 0 15 36 0 0 100 0 0 90 51
|
ATHB-4_M0845_1.02_CISBP_shift2 (ATHB-4_M0845_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB-4_M0845_1.02_CISBP_shift2.png) |
0.898 |
0.808 |
2.868 |
0.816 |
0.925 |
0.902 |
0.950 |
12 |
4 |
37 |
2 |
11 |
13 |
12 |
13.000 |
11 |
; oligos_5-7nt_m3 versus ATHB-4_M0845_1.02_CISBP; m=8/19; ncol2=10; w=9; offset=0; strand=D; shift=2; score= 13; --syAATcAtt
; cor=0.898; Ncor=0.808; logoDP=2.868; NIcor=0.816; NsEucl=0.925; SSD=0.902; NSW=0.950; rcor=12; rNcor=4; rlogoDP=37; rNIcor=2; rNsEucl=11; rSSD=13; rNSW=12; rank_mean=13.000; match_rank=11
a 0 0 17 11 77 79 11 13 75 23 22
c 0 0 35 48 7 9 4 59 6 13 20
g 0 0 27 4 3 5 7 14 8 11 20
t 0 0 21 37 13 7 78 14 11 53 38
|
ATWOX13_M0853_1.02_CISBP_shift2 (ATWOX13_M0853_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATWOX13_M0853_1.02_CISBP_shift2.png) |
0.859 |
0.763 |
8.096 |
0.757 |
0.904 |
1.178 |
0.926 |
24 |
11 |
8 |
10 |
37 |
28 |
33 |
21.571 |
17 |
; oligos_5-7nt_m3 versus ATWOX13_M0853_1.02_CISBP; m=9/19; ncol2=8; w=8; offset=0; strand=D; shift=2; score=21.5714; --TCAATCAa-
; cor=0.859; Ncor=0.763; logoDP=8.096; NIcor=0.757; NsEucl=0.904; SSD=1.178; NSW=0.926; rcor=24; rNcor=11; rlogoDP=8; rNIcor=10; rNsEucl=37; rSSD=28; rNSW=33; rank_mean=21.571; match_rank=17
a 0 0 0 0 100 100 0 7 93 60 0
c 0 0 9 85 0 0 0 80 0 10 0
g 0 0 9 0 0 0 0 0 0 20 0
t 0 0 82 15 0 0 100 13 7 10 0
|
ATHB6_M0843_1.02_CISBP_shift2 (ATHB6_M0843_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB6_M0843_1.02_CISBP_shift2.png) |
0.816 |
0.816 |
4.783 |
0.806 |
0.911 |
1.295 |
0.928 |
29 |
2 |
25 |
7 |
29 |
31 |
30 |
21.857 |
18 |
; oligos_5-7nt_m3 versus ATHB6_M0843_1.02_CISBP; m=10/19; ncol2=9; w=9; offset=0; strand=D; shift=2; score=21.8571; --byAATmATk
; cor=0.816; Ncor=0.816; logoDP=4.783; NIcor=0.806; NsEucl=0.911; SSD=1.295; NSW=0.928; rcor=29; rNcor=2; rlogoDP=25; rNIcor=7; rNsEucl=29; rSSD=31; rNSW=30; rank_mean=21.857; match_rank=18
a 0 0 18 15 75 89 2 36 92 11 23
c 0 0 25 52 9 7 1 31 1 7 11
g 0 0 29 8 7 0 0 13 4 13 27
t 0 0 28 25 9 4 97 20 3 69 39
|
WOX13_WOX13_ArabidopsisPBM_shift0 (WOX13_WOX13_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/WOX13_WOX13_ArabidopsisPBM_shift0.png) |
0.865 |
0.629 |
7.009 |
0.619 |
0.909 |
1.064 |
0.933 |
21 |
21 |
12 |
19 |
32 |
24 |
28 |
22.429 |
19 |
; oligos_5-7nt_m3 versus WOX13_WOX13_ArabidopsisPBM; m=11/19; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=22.4286; wrTCAATCAa-
; cor=0.865; Ncor=0.629; logoDP=7.009; NIcor=0.619; NsEucl=0.909; SSD=1.064; NSW=0.933; rcor=21; rNcor=21; rlogoDP=12; rNIcor=19; rNsEucl=32; rSSD=24; rNSW=28; rank_mean=22.429; match_rank=19
a 32 54 3 2 95 96 1 1 90 40 0
c 16 3 13 93 1 1 1 86 3 15 0
g 15 31 12 1 1 1 1 1 2 21 0
t 37 12 72 4 3 2 97 12 5 24 0
|
ATHB-6_MA0953.1_JASPAR_shift2 (ATHB-6_MA0953.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB-6_MA0953.1_JASPAR_shift2.png) |
0.815 |
0.815 |
4.801 |
0.803 |
0.910 |
1.305 |
0.927 |
30 |
3 |
24 |
8 |
30 |
33 |
31 |
22.714 |
20 |
; oligos_5-7nt_m3 versus ATHB-6_MA0953.1_JASPAR; m=12/19; ncol2=9; w=9; offset=0; strand=D; shift=2; score=22.7143; --bcAATmATk
; cor=0.815; Ncor=0.815; logoDP=4.801; NIcor=0.803; NsEucl=0.910; SSD=1.305; NSW=0.927; rcor=30; rNcor=3; rlogoDP=24; rNIcor=8; rNsEucl=30; rSSD=33; rNSW=31; rank_mean=22.714; match_rank=20
a 0 0 177 149 745 886 20 356 924 106 234
c 0 0 252 524 89 71 6 310 5 66 111
g 0 0 287 85 73 1 1 128 38 130 266
t 0 0 284 243 92 42 972 206 32 698 389
|
estExt_gwp_gw1.C_70211_M1195_1.02_CISBP_shift3 (estExt_gwp_gw1.C_70211_M1195_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/estExt_gwp_gw1.C_70211_M1195_1.02_CISBP_shift3.png) |
0.836 |
0.608 |
5.162 |
0.596 |
0.905 |
1.166 |
0.927 |
26 |
26 |
21 |
24 |
36 |
27 |
32 |
27.429 |
25 |
; oligos_5-7nt_m3 versus estExt_gwp_gw1.C_70211_M1195_1.02_CISBP; m=13/19; ncol2=10; w=8; offset=1; strand=D; shift=3; score=27.4286; ---yaATmAtk
; cor=0.836; Ncor=0.608; logoDP=5.162; NIcor=0.596; NsEucl=0.905; SSD=1.166; NSW=0.927; rcor=26; rNcor=26; rlogoDP=21; rNIcor=24; rNsEucl=36; rSSD=27; rNSW=32; rank_mean=27.429; match_rank=25
a 0 0 0 15 66 89 0.0000 31 93 13 22
c 0 0 0 45 19 11 0.0000 33 0 14 11
g 0 0 0 12 15 0 0.0000 18 7 13 31
t 0 0 0 28 0 0 1.0000 18 0 60 36
|
ATHB-12_MA0950.1_JASPAR_rc_shift3 (ATHB-12_MA0950.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB-12_MA0950.1_JASPAR_rc_shift3.png) |
0.864 |
0.768 |
0.605 |
-0.075 |
0.911 |
1.018 |
0.936 |
23 |
10 |
52 |
55 |
27 |
22 |
24 |
30.429 |
27 |
; oligos_5-7nt_m3 versus ATHB-12_MA0950.1_JASPAR_rc; m=14/19; ncol2=8; w=8; offset=1; strand=R; shift=3; score=30.4286; ---CAATcAtt
; cor=0.864; Ncor=0.768; logoDP=0.605; NIcor=-0.075; NsEucl=0.911; SSD=1.018; NSW=0.936; rcor=23; rNcor=10; rlogoDP=52; rNIcor=55; rNsEucl=27; rSSD=22; rNSW=24; rank_mean=30.429; match_rank=27
a 0 0 0 88 940 966 13 118 941 233 124
c 0 0 0 766 19 17 15 633 6 53 107
g 0 0 0 18 10 8 7 201 35 46 191
t 0 0 0 128 30 9 965 48 18 668 579
|
ATHB12_ATHB12_ArabidopsisPBM_rc_shift2 (ATHB12_ATHB12_ArabidopsisPBM_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATHB12_ATHB12_ArabidopsisPBM_rc_shift2.png) |
0.839 |
0.755 |
0.617 |
-0.059 |
0.913 |
1.232 |
0.932 |
25 |
12 |
51 |
53 |
25 |
30 |
29 |
32.143 |
28 |
; oligos_5-7nt_m3 versus ATHB12_ATHB12_ArabidopsisPBM_rc; m=15/19; ncol2=10; w=9; offset=0; strand=R; shift=2; score=32.1429; --yCAATcAtt
; cor=0.839; Ncor=0.755; logoDP=0.617; NIcor=-0.059; NsEucl=0.913; SSD=1.232; NSW=0.932; rcor=25; rNcor=12; rlogoDP=51; rNIcor=53; rNsEucl=25; rSSD=30; rNSW=29; rank_mean=32.143; match_rank=28
a 0 0 5 8 94 96 1 12 94 23 12
c 0 0 56 77 2 2 1 63 1 5 11
g 0 0 14 2 1 1 1 20 3 5 19
t 0 0 25 13 3 1 97 5 2 67 58
|
YAB1_YAB1_ArabidopsisPBM_shift3 (YAB1_YAB1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/YAB1_YAB1_ArabidopsisPBM_shift3.png) |
0.782 |
0.569 |
4.031 |
0.533 |
0.891 |
1.524 |
0.905 |
40 |
32 |
29 |
31 |
46 |
36 |
42 |
36.571 |
37 |
; oligos_5-7nt_m3 versus YAB1_YAB1_ArabidopsisPBM; m=16/19; ncol2=10; w=8; offset=1; strand=D; shift=3; score=36.5714; ---ywATmATA
; cor=0.782; Ncor=0.569; logoDP=4.031; NIcor=0.533; NsEucl=0.891; SSD=1.524; NSW=0.905; rcor=40; rNcor=32; rlogoDP=29; rNIcor=31; rNsEucl=46; rSSD=36; rNSW=42; rank_mean=36.571; match_rank=37
a 0 0 0 9 64 86 4 29 91 5 73
c 0 0 0 47 3 3 2 43 1 3 8
g 0 0 0 10 4 2 4 13 5 4 12
t 0 0 0 34 29 9 90 15 3 88 7
|
APRR2_M1332_1.02_CISBP_shift0 (APRR2_M1332_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/APRR2_M1332_1.02_CISBP_shift0.png) |
0.767 |
0.558 |
2.954 |
0.571 |
0.887 |
1.629 |
0.898 |
46 |
36 |
34 |
26 |
49 |
41 |
47 |
39.857 |
44 |
; oligos_5-7nt_m3 versus APRR2_M1332_1.02_CISBP; m=17/19; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=39.8571; rsrwaATCya-
; cor=0.767; Ncor=0.558; logoDP=2.954; NIcor=0.571; NsEucl=0.887; SSD=1.629; NSW=0.898; rcor=46; rNcor=36; rlogoDP=34; rNIcor=26; rNsEucl=49; rSSD=41; rNSW=47; rank_mean=39.857; match_rank=44
a 30 15 27 30 63 87 11 14 15 34 0
c 18 38 12 22 5 2 4 71 28 22 0
g 30 25 53 20 12 1 0 7 13 24 0
t 22 22 8 28 20 10 85 8 44 20 0
|
e_gw1.362.4.1_M1384_1.02_CISBP_shift0 (e_gw1.362.4.1_M1384_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.362.4.1_M1384_1.02_CISBP_shift0.png) |
0.754 |
0.548 |
5.091 |
0.541 |
0.886 |
1.667 |
0.896 |
55 |
40 |
23 |
29 |
51 |
44 |
49 |
41.571 |
49 |
; oligos_5-7nt_m3 versus e_gw1.362.4.1_M1384_1.02_CISBP; m=18/19; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=41.5714; asmrdATCtw-
; cor=0.754; Ncor=0.548; logoDP=5.091; NIcor=0.541; NsEucl=0.886; SSD=1.667; NSW=0.896; rcor=55; rNcor=40; rlogoDP=23; rNIcor=29; rNsEucl=51; rSSD=44; rNSW=49; rank_mean=41.571; match_rank=49
a 35 18 29 35 42 100 1 7 19 26 0
c 19 29 38 12 4 0 0 89 18 23 0
g 24 32 20 47 25 0 0 0 14 20 0
t 22 21 13 6 29 0 99 4 49 31 0
|
estExt_fgenesh1_pg.C_Chr_16.00010090_M1397_1.02_CISBP_shift1 (estExt_fgenesh1_pg.C_Chr_16.00010090_M1397_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/estExt_fgenesh1_pg.C_Chr_16.00010090_M1397_1.02_CISBP_shift1.png) |
0.756 |
0.529 |
3.196 |
0.509 |
0.869 |
1.685 |
0.880 |
53 |
42 |
31 |
36 |
59 |
45 |
53 |
45.571 |
53 |
; oligos_5-7nt_m3 versus estExt_fgenesh1_pg.C_Chr_16.00010090_M1397_1.02_CISBP; m=19/19; ncol2=8; w=7; offset=-1; strand=D; shift=1; score=45.5714; -smrdATct--
; cor=0.756; Ncor=0.529; logoDP=3.196; NIcor=0.509; NsEucl=0.869; SSD=1.685; NSW=0.880; rcor=53; rNcor=42; rlogoDP=31; rNIcor=36; rNsEucl=59; rSSD=45; rNSW=53; rank_mean=45.571; match_rank=53
a 0 20 27 28 33 98 9 13 24 0 0
c 0 29 33 20 10 0 3 66 23 0 0
g 0 29 23 39 27 1 1 10 21 0 0
t 0 22 17 13 30 1 87 11 32 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m5_shift0 (oligos_5-7nt_m5) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m5_shift0.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m5; m=0 (reference); ncol1=13; shift=0; ncol=13; hwtaTTTAAACtt
; Alignment reference
a 10 9 8 19 1 1 0 30 27 30 2 7 6
c 9 6 2 6 1 3 1 3 1 0 30 7 7
g 3 7 3 4 2 1 0 0 3 1 1 8 6
t 11 11 20 4 29 28 32 0 2 2 0 11 14
|
AT2G20110_M0588_1.02_CISBP_rc_shift3 (AT2G20110_M0588_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT2G20110_M0588_1.02_CISBP_rc_shift3.png) |
0.909 |
0.559 |
5.836 |
0.522 |
0.924 |
0.741 |
0.954 |
9 |
35 |
17 |
34 |
13 |
10 |
10 |
18.286 |
12 |
; oligos_5-7nt_m5 versus AT2G20110_M0588_1.02_CISBP_rc; m=1/6; ncol2=8; w=8; offset=3; strand=R; shift=3; score=18.2857; ---dTTTAAAy--
; cor=0.909; Ncor=0.559; logoDP=5.836; NIcor=0.522; NsEucl=0.924; SSD=0.741; NSW=0.954; rcor=9; rNcor=35; rlogoDP=17; rNIcor=34; rNsEucl=13; rSSD=10; rNSW=10; rank_mean=18.286; match_rank=12
a 0 0 0 50 0 0 0 80 100 100 20 0 0
c 0 0 0 0 0 0 20 0 0 0 40 0 0
g 0 0 0 25 0 0 0 20 0 0 0 0 0
t 0 0 0 25 100 100 80 0 0 0 40 0 0
|
BRADI1G55710_M0592_1.02_CISBP_shift2 (BRADI1G55710_M0592_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/BRADI1G55710_M0592_1.02_CISBP_shift2.png) |
0.813 |
0.625 |
1.370 |
0.629 |
0.909 |
1.649 |
0.918 |
32 |
24 |
49 |
16 |
31 |
43 |
36 |
33.000 |
30 |
; oligos_5-7nt_m5 versus BRADI1G55710_M0592_1.02_CISBP; m=2/6; ncol2=10; w=10; offset=2; strand=D; shift=2; score= 33; --mrTtyraAyk-
; cor=0.813; Ncor=0.625; logoDP=1.370; NIcor=0.629; NsEucl=0.909; SSD=1.649; NSW=0.918; rcor=32; rNcor=24; rlogoDP=49; rNIcor=16; rNsEucl=31; rSSD=43; rNSW=36; rank_mean=33.000; match_rank=30
a 0 0 29 46 6 11 6 51 60 76 12 24 0
c 0 0 27 14 12 16 33 11 13 6 28 20 0
g 0 0 20 28 6 13 10 33 16 12 14 27 0
t 0 0 24 12 76 60 51 5 11 6 46 29 0
|
SOL1_M0590_1.02_CISBP_rc_shift3 (SOL1_M0590_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SOL1_M0590_1.02_CISBP_rc_shift3.png) |
0.832 |
0.512 |
4.548 |
0.440 |
0.899 |
1.298 |
0.919 |
28 |
45 |
28 |
40 |
41 |
32 |
35 |
35.571 |
36 |
; oligos_5-7nt_m5 versus SOL1_M0590_1.02_CISBP_rc; m=3/6; ncol2=8; w=8; offset=3; strand=R; shift=3; score=35.5714; ---wTTyAAAy--
; cor=0.832; Ncor=0.512; logoDP=4.548; NIcor=0.440; NsEucl=0.899; SSD=1.298; NSW=0.919; rcor=28; rNcor=45; rlogoDP=28; rNIcor=40; rNsEucl=41; rSSD=32; rNSW=35; rank_mean=35.571; match_rank=36
a 0 0 0 62 7 0 7 80 100 96 23 0 0
c 0 0 0 0 0 2 61 2 0 0 41 0 0
g 0 0 0 10 0 0 0 15 0 2 10 0 0
t 0 0 0 28 93 98 32 3 0 2 26 0 0
|
fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP_shift3 (fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP_shift3.png) |
0.771 |
0.593 |
1.419 |
0.597 |
0.905 |
1.797 |
0.910 |
42 |
30 |
48 |
23 |
34 |
47 |
38 |
37.429 |
38 |
; oligos_5-7nt_m5 versus fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP; m=4/6; ncol2=10; w=10; offset=3; strand=D; shift=3; score=37.4286; ---dTTTraawww
; cor=0.771; Ncor=0.593; logoDP=1.419; NIcor=0.597; NsEucl=0.905; SSD=1.797; NSW=0.910; rcor=42; rNcor=30; rlogoDP=48; rNIcor=23; rNsEucl=34; rSSD=47; rNSW=38; rank_mean=37.429; match_rank=38
a 0 0 0 34 9 12 6 34 56 52 26 25 26
c 0 0 0 10 10 8 24 14 13 14 22 20 19
g 0 0 0 26 6 5 0 45 11 16 15 19 22
t 0 0 0 30 75 75 70 7 20 18 37 36 33
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_shift2 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_shift2.png) |
0.760 |
0.468 |
5.152 |
0.472 |
0.876 |
1.973 |
0.877 |
49 |
48 |
22 |
39 |
52 |
52 |
54 |
45.143 |
52 |
; oligos_5-7nt_m5 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint; m=5/6; ncol2=8; w=8; offset=2; strand=D; shift=2; score=45.1429; --CTTTTAAA---
; cor=0.760; Ncor=0.468; logoDP=5.152; NIcor=0.472; NsEucl=0.876; SSD=1.973; NSW=0.877; rcor=49; rNcor=48; rlogoDP=22; rNIcor=39; rNsEucl=52; rSSD=52; rNSW=54; rank_mean=45.143; match_rank=52
a 0 0 11 0 8 2 0 87 96 87 0 0 0
c 0 0 69 0 8 8 0 0 0 1 0 0 0
g 0 0 8 0 8 8 0 0 0 8 0 0 0
t 0 0 8 96 72 78 96 9 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc_shift4 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc_shift4.png) |
0.755 |
0.465 |
1.703 |
0.027 |
0.874 |
2.037 |
0.873 |
54 |
49 |
44 |
50 |
54 |
54 |
56 |
51.571 |
60 |
; oligos_5-7nt_m5 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn3_B_3D-footprint_rc; m=6/6; ncol2=8; w=8; offset=4; strand=R; shift=4; score=51.5714; ----TATAAACG-
; cor=0.755; Ncor=0.465; logoDP=1.703; NIcor=0.027; NsEucl=0.874; SSD=2.037; NSW=0.873; rcor=54; rNcor=49; rlogoDP=44; rNIcor=50; rNsEucl=54; rSSD=54; rNSW=56; rank_mean=51.571; match_rank=60
a 0 0 0 0 7 96 0 96 88 73 7 9 0
c 0 0 0 0 8 0 7 0 7 7 88 14 0
g 0 0 0 0 0 0 0 0 0 7 0 66 0
t 0 0 0 0 81 0 89 0 1 9 1 7 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m2_shift0 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift0.png) |
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; oligos_5-7nt_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; dwGTTTAAACwh
; Alignment reference
a 11 16 3 3 1 0 30 34 33 2 11 12
c 3 1 1 0 1 5 1 0 0 30 8 10
g 10 8 30 0 0 1 5 1 0 1 1 3
t 12 11 2 33 34 30 0 1 3 3 16 11
|
AT2G20110_M0588_1.02_CISBP_shift2 (AT2G20110_M0588_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT2G20110_M0588_1.02_CISBP_shift2.png) |
0.892 |
0.595 |
6.987 |
0.578 |
0.916 |
0.910 |
0.943 |
13 |
29 |
13 |
25 |
23 |
14 |
20 |
19.571 |
14 |
; oligos_5-7nt_m2 versus AT2G20110_M0588_1.02_CISBP; m=1/6; ncol2=8; w=8; offset=2; strand=D; shift=2; score=19.5714; --rTTTAAAh--
; cor=0.892; Ncor=0.595; logoDP=6.987; NIcor=0.578; NsEucl=0.916; SSD=0.910; NSW=0.943; rcor=13; rNcor=29; rlogoDP=13; rNIcor=25; rNsEucl=23; rSSD=14; rNSW=20; rank_mean=19.571; match_rank=14
a 0 0 40 0 0 0 80 100 100 25 0 0
c 0 0 0 0 0 20 0 0 0 25 0 0
g 0 0 40 0 0 0 20 0 0 0 0 0
t 0 0 20 100 100 80 0 0 0 50 0 0
|
BRADI1G55710_M0592_1.02_CISBP_shift1 (BRADI1G55710_M0592_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/BRADI1G55710_M0592_1.02_CISBP_shift1.png) |
0.811 |
0.675 |
1.558 |
0.664 |
0.905 |
1.810 |
0.909 |
33 |
16 |
45 |
14 |
35 |
48 |
39 |
32.857 |
29 |
; oligos_5-7nt_m2 versus BRADI1G55710_M0592_1.02_CISBP; m=2/6; ncol2=10; w=10; offset=1; strand=D; shift=1; score=32.8571; -mrTtyraAyk-
; cor=0.811; Ncor=0.675; logoDP=1.558; NIcor=0.664; NsEucl=0.905; SSD=1.810; NSW=0.909; rcor=33; rNcor=16; rlogoDP=45; rNIcor=14; rNsEucl=35; rSSD=48; rNSW=39; rank_mean=32.857; match_rank=29
a 0 29 46 6 11 6 51 60 76 12 24 0
c 0 27 14 12 16 33 11 13 6 28 20 0
g 0 20 28 6 13 10 33 16 12 14 27 0
t 0 24 12 76 60 51 5 11 6 46 29 0
|
fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP_shift2 (fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP_shift2.png) |
0.785 |
0.654 |
1.532 |
0.630 |
0.902 |
1.940 |
0.903 |
37 |
18 |
46 |
15 |
39 |
50 |
43 |
35.429 |
35 |
; oligos_5-7nt_m2 versus fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP; m=3/6; ncol2=10; w=10; offset=2; strand=D; shift=2; score=35.4286; --dTTTraawww
; cor=0.785; Ncor=0.654; logoDP=1.532; NIcor=0.630; NsEucl=0.902; SSD=1.940; NSW=0.903; rcor=37; rNcor=18; rlogoDP=46; rNIcor=15; rNsEucl=39; rSSD=50; rNSW=43; rank_mean=35.429; match_rank=35
a 0 0 34 9 12 6 34 56 52 26 25 26
c 0 0 10 10 8 24 14 13 14 22 20 19
g 0 0 26 6 5 0 45 11 16 15 19 22
t 0 0 30 75 75 70 7 20 18 37 36 33
|
AT3G04850_M0589_1.02_CISBP_rc_shift1 (AT3G04850_M0589_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G04850_M0589_1.02_CISBP_rc_shift1.png) |
0.751 |
0.626 |
2.991 |
0.617 |
0.901 |
1.965 |
0.902 |
59 |
22 |
33 |
20 |
40 |
51 |
44 |
38.429 |
39 |
; oligos_5-7nt_m2 versus AT3G04850_M0589_1.02_CISBP_rc; m=4/6; ncol2=10; w=10; offset=1; strand=R; shift=1; score=38.4286; -awTTyrAAwt-
; cor=0.751; Ncor=0.626; logoDP=2.991; NIcor=0.617; NsEucl=0.901; SSD=1.965; NSW=0.902; rcor=59; rNcor=22; rlogoDP=33; rNIcor=20; rNsEucl=40; rSSD=51; rNSW=44; rank_mean=38.429; match_rank=39
a 0 52 50 12 6 3 52 88 74 30 18 0
c 0 12 7 9 4 42 4 2 5 13 18 0
g 0 18 14 5 2 4 42 4 9 7 12 0
t 0 18 29 74 88 51 2 6 12 50 52 0
|
SOL1_M0590_1.02_CISBP_rc_shift2 (SOL1_M0590_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SOL1_M0590_1.02_CISBP_rc_shift2.png) |
0.799 |
0.532 |
5.746 |
0.511 |
0.887 |
1.630 |
0.898 |
35 |
41 |
19 |
35 |
50 |
42 |
48 |
38.571 |
40 |
; oligos_5-7nt_m2 versus SOL1_M0590_1.02_CISBP_rc; m=5/6; ncol2=8; w=8; offset=2; strand=R; shift=2; score=38.5714; --wTTyAAAy--
; cor=0.799; Ncor=0.532; logoDP=5.746; NIcor=0.511; NsEucl=0.887; SSD=1.630; NSW=0.898; rcor=35; rNcor=41; rlogoDP=19; rNIcor=35; rNsEucl=50; rSSD=42; rNSW=48; rank_mean=38.571; match_rank=40
a 0 0 62 7 0 7 80 100 96 23 0 0
c 0 0 0 0 2 61 2 0 0 41 0 0
g 0 0 10 0 0 0 15 0 2 10 0 0
t 0 0 28 93 98 32 3 0 2 26 0 0
|
gw1.20.00.89.1_M0601_1.02_CISBP_shift1 (gw1.20.00.89.1_M0601_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/gw1.20.00.89.1_M0601_1.02_CISBP_shift1.png) |
0.750 |
0.625 |
0.878 |
0.611 |
0.894 |
2.264 |
0.887 |
60 |
23 |
50 |
21 |
44 |
59 |
51 |
44.000 |
51 |
; oligos_5-7nt_m2 versus gw1.20.00.89.1_M0601_1.02_CISBP; m=6/6; ncol2=10; w=10; offset=1; strand=D; shift=1; score= 44; -awttyraawt-
; cor=0.750; Ncor=0.625; logoDP=0.878; NIcor=0.611; NsEucl=0.894; SSD=2.264; NSW=0.887; rcor=60; rNcor=23; rlogoDP=50; rNIcor=21; rNsEucl=44; rSSD=59; rNSW=51; rank_mean=44.000; match_rank=51
a 0 54 28 10 20 8 43 59 61 38 23 0
c 0 12 14 18 12 28 21 9 12 20 11 0
g 0 11 20 12 9 21 28 12 18 14 12 0
t 0 23 38 60 59 43 8 20 9 28 54 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
dyads_test_vs_ctrl_m1_shift0 (dyads_test_vs_ctrl_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/dyads_test_vs_ctrl_m1_shift0.png) |
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; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=0; ncol=16; wsAAATawmATCtw--
; Alignment reference
a 13 5 39 37 39 3 26 13 14 36 1 1 10 11 0 0
c 7 18 2 2 1 8 7 1 18 2 0 39 9 8 0 0
g 6 11 1 3 2 1 2 2 6 0 1 0 5 6 0 0
t 16 8 0 0 0 30 7 26 4 4 40 2 18 17 0 0
|
TIFY2A_M0760_1.02_CISBP_rc_shift7 (TIFY2A_M0760_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TIFY2A_M0760_1.02_CISBP_rc_shift7.png) |
0.917 |
0.458 |
0.240 |
-0.099 |
0.941 |
0.347 |
0.975 |
8 |
50 |
56 |
57 |
4 |
4 |
4 |
26.143 |
21 |
; dyads_test_vs_ctrl_m1 versus TIFY2A_M0760_1.02_CISBP_rc; m=1/11; ncol2=7; w=7; offset=7; strand=R; shift=7; score=26.1429; -------hsATCtd--
; cor=0.917; Ncor=0.458; logoDP=0.240; NIcor=-0.099; NsEucl=0.941; SSD=0.347; NSW=0.975; rcor=8; rNcor=50; rlogoDP=56; rNIcor=57; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=26.143; match_rank=21
a 0 0 0 0 0 0 0 28 24 99 7 5 23 26 0 0
c 0 0 0 0 0 0 0 25 31 0 1 86 13 23 0 0
g 0 0 0 0 0 0 0 20 32 0 0 1 24 25 0 0
t 0 0 0 0 0 0 0 27 13 1 92 8 40 26 0 0
|
TIFY2B_M0762_1.02_CISBP_rc_shift6 (TIFY2B_M0762_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TIFY2B_M0762_1.02_CISBP_rc_shift6.png) |
0.888 |
0.444 |
0.270 |
-0.073 |
0.928 |
0.510 |
0.964 |
16 |
52 |
54 |
54 |
10 |
6 |
8 |
28.571 |
26 |
; dyads_test_vs_ctrl_m1 versus TIFY2B_M0762_1.02_CISBP_rc; m=2/11; ncol2=7; w=7; offset=6; strand=R; shift=6; score=28.5714; ------hwsATCt---
; cor=0.888; Ncor=0.444; logoDP=0.270; NIcor=-0.073; NsEucl=0.928; SSD=0.510; NSW=0.964; rcor=16; rNcor=52; rlogoDP=54; rNIcor=54; rNsEucl=10; rSSD=6; rNSW=8; rank_mean=28.571; match_rank=26
a 0 0 0 0 0 0 26 28 24 100 3 4 21 0 0 0
c 0 0 0 0 0 0 26 24 27 0 0 96 11 0 0 0
g 0 0 0 0 0 0 17 19 40 0 0 0 23 0 0 0
t 0 0 0 0 0 0 31 29 9 0 97 0 45 0 0 0
|
GATA27_M0771_1.02_CISBP_rc_shift5 (GATA27_M0771_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/GATA27_M0771_1.02_CISBP_rc_shift5.png) |
0.802 |
0.516 |
0.191 |
-0.094 |
0.922 |
0.983 |
0.945 |
34 |
43 |
58 |
56 |
17 |
18 |
17 |
34.714 |
31 |
; dyads_test_vs_ctrl_m1 versus GATA27_M0771_1.02_CISBP_rc; m=3/11; ncol2=9; w=9; offset=5; strand=R; shift=5; score=34.7143; -----wwygATCkr--
; cor=0.802; Ncor=0.516; logoDP=0.191; NIcor=-0.094; NsEucl=0.922; SSD=0.983; NSW=0.945; rcor=34; rNcor=43; rlogoDP=58; rNIcor=56; rNsEucl=17; rSSD=18; rNSW=17; rank_mean=34.714; match_rank=31
a 0 0 0 0 0 26 27 23 23 73 14 16 18 26 0 0
c 0 0 0 0 0 24 22 27 24 4 0 73 14 20 0 0
g 0 0 0 0 0 21 23 17 42 18 0 3 37 30 0 0
t 0 0 0 0 0 29 28 33 11 5 86 8 31 24 0 0
|
PK27213.1_M1312_1.02_CISBP_rc_shift6 (PK27213.1_M1312_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK27213.1_M1312_1.02_CISBP_rc_shift6.png) |
0.813 |
0.407 |
0.195 |
-0.042 |
0.921 |
0.804 |
0.950 |
31 |
60 |
57 |
51 |
20 |
12 |
13 |
34.857 |
32 |
; dyads_test_vs_ctrl_m1 versus PK27213.1_M1312_1.02_CISBP_rc; m=4/11; ncol2=10; w=8; offset=6; strand=R; shift=6; score=34.8571; ------sttATCywkw
; cor=0.813; Ncor=0.407; logoDP=0.195; NIcor=-0.042; NsEucl=0.921; SSD=0.804; NSW=0.950; rcor=31; rNcor=60; rlogoDP=57; rNIcor=51; rNsEucl=20; rSSD=12; rNSW=13; rank_mean=34.857; match_rank=32
a 0 0 0 0 0 0 20 17 18 91 5 6 16 27 24 35
c 0 0 0 0 0 0 35 23 12 0 9 85 37 21 23 19
g 0 0 0 0 0 0 25 8 12 4 6 4 17 24 25 18
t 0 0 0 0 0 0 20 52 58 5 80 5 30 28 28 28
|
PK29550.1_M1314_1.02_CISBP_rc_shift5 (PK29550.1_M1314_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK29550.1_M1314_1.02_CISBP_rc_shift5.png) |
0.751 |
0.451 |
1.501 |
0.240 |
0.914 |
1.190 |
0.934 |
56 |
51 |
47 |
46 |
24 |
29 |
26 |
39.857 |
43 |
; dyads_test_vs_ctrl_m1 versus PK29550.1_M1314_1.02_CISBP_rc; m=5/11; ncol2=10; w=9; offset=5; strand=R; shift=5; score=39.8571; -----ycttATCyrw-
; cor=0.751; Ncor=0.451; logoDP=1.501; NIcor=0.240; NsEucl=0.914; SSD=1.190; NSW=0.934; rcor=56; rNcor=51; rlogoDP=47; rNIcor=46; rNsEucl=24; rSSD=29; rNSW=26; rank_mean=39.857; match_rank=43
a 0 0 0 0 0 19 20 17 18 89 4 4 7 34 27 0
c 0 0 0 0 0 36 35 24 12 3 7 86 54 14 24 0
g 0 0 0 0 0 20 24 5 13 3 5 3 9 28 22 0
t 0 0 0 0 0 25 21 54 57 5 84 7 30 24 27 0
|
AT5G08520_M1339_1.02_CISBP_rc_shift5 (AT5G08520_M1339_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT5G08520_M1339_1.02_CISBP_rc_shift5.png) |
0.760 |
0.489 |
0.256 |
-0.127 |
0.916 |
1.144 |
0.936 |
48 |
47 |
55 |
60 |
22 |
26 |
23 |
40.143 |
45 |
; dyads_test_vs_ctrl_m1 versus AT5G08520_M1339_1.02_CISBP_rc; m=6/11; ncol2=9; w=9; offset=5; strand=R; shift=5; score=40.1429; -----ccytATCyd--
; cor=0.760; Ncor=0.489; logoDP=0.256; NIcor=-0.127; NsEucl=0.916; SSD=1.144; NSW=0.936; rcor=48; rNcor=47; rlogoDP=55; rNIcor=60; rNsEucl=22; rSSD=26; rNSW=23; rank_mean=40.143; match_rank=45
a 0 0 0 0 0 20 18 17 18 98 2 4 15 29 0 0
c 0 0 0 0 0 35 37 25 15 0 12 89 42 21 0 0
g 0 0 0 0 0 21 24 8 13 1 8 3 15 25 0 0
t 0 0 0 0 0 24 21 50 54 1 78 4 28 25 0 0
|
GATA15_MA1016.1_JASPAR_rc_shift6 (GATA15_MA1016.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/GATA15_MA1016.1_JASPAR_rc_shift6.png) |
0.785 |
0.418 |
0.185 |
-0.110 |
0.911 |
1.016 |
0.936 |
38 |
57 |
60 |
59 |
26 |
21 |
22 |
40.429 |
46 |
; dyads_test_vs_ctrl_m1 versus GATA15_MA1016.1_JASPAR_rc; m=7/11; ncol2=9; w=8; offset=6; strand=R; shift=6; score=40.4286; ------yygATCryr-
; cor=0.785; Ncor=0.418; logoDP=0.185; NIcor=-0.110; NsEucl=0.911; SSD=1.016; NSW=0.936; rcor=38; rNcor=57; rlogoDP=60; rNIcor=59; rNsEucl=26; rSSD=21; rNSW=22; rank_mean=40.429; match_rank=46
a 0 0 0 0 0 0 212 207 126 996 19 19 465 208 296 0
c 0 0 0 0 0 0 280 268 156 0 0 903 66 284 217 0
g 0 0 0 0 0 0 239 201 663 1 0 38 288 200 281 0
t 0 0 0 0 0 0 269 324 55 3 980 40 182 308 206 0
|
GATA15_M0761_1.02_CISBP_rc_shift6 (GATA15_M0761_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/GATA15_M0761_1.02_CISBP_rc_shift6.png) |
0.784 |
0.418 |
0.186 |
-0.109 |
0.911 |
1.018 |
0.936 |
39 |
58 |
59 |
58 |
28 |
23 |
25 |
41.429 |
48 |
; dyads_test_vs_ctrl_m1 versus GATA15_M0761_1.02_CISBP_rc; m=8/11; ncol2=9; w=8; offset=6; strand=R; shift=6; score=41.4286; ------yygATCryr-
; cor=0.784; Ncor=0.418; logoDP=0.186; NIcor=-0.109; NsEucl=0.911; SSD=1.018; NSW=0.936; rcor=39; rNcor=58; rlogoDP=59; rNIcor=58; rNsEucl=28; rSSD=23; rNSW=25; rank_mean=41.429; match_rank=48
a 0 0 0 0 0 0 21 21 13 100 2 2 46 21 30 0
c 0 0 0 0 0 0 28 27 15 0 0 90 7 28 22 0
g 0 0 0 0 0 0 24 20 66 0 0 4 29 20 27 0
t 0 0 0 0 0 0 27 32 6 0 98 4 18 31 21 0
|
Medtr8g106590.1_M0145_1.02_CISBP_shift3 (Medtr8g106590.1_M0145_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Medtr8g106590.1_M0145_1.02_CISBP_shift3.png) |
0.758 |
0.433 |
3.107 |
0.413 |
0.888 |
1.601 |
0.900 |
50 |
53 |
32 |
42 |
47 |
38 |
45 |
43.857 |
50 |
; dyads_test_vs_ctrl_m1 versus Medtr8g106590.1_M0145_1.02_CISBP; m=9/11; ncol2=8; w=8; offset=3; strand=D; shift=3; score=43.8571; ---AAAWTAAT-----
; cor=0.758; Ncor=0.433; logoDP=3.107; NIcor=0.413; NsEucl=0.888; SSD=1.601; NSW=0.900; rcor=50; rNcor=53; rlogoDP=32; rNIcor=42; rNsEucl=47; rSSD=38; rNSW=45; rank_mean=43.857; match_rank=50
a 0 0 0 84 88 83 69 17 83 76 19 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 3 4 0 0 0 0 0
g 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 4 12 17 31 83 17 21 77 0 0 0 0 0
|
AHL20_MA0933.1_JASPAR_shift3 (AHL20_MA0933.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AHL20_MA0933.1_JASPAR_shift3.png) |
0.751 |
0.429 |
2.873 |
0.392 |
0.888 |
1.604 |
0.900 |
57 |
56 |
36 |
44 |
48 |
39 |
46 |
46.571 |
54 |
; dyads_test_vs_ctrl_m1 versus AHL20_MA0933.1_JASPAR; m=10/11; ncol2=8; w=8; offset=3; strand=D; shift=3; score=46.5714; ---AATWAAwT-----
; cor=0.751; Ncor=0.429; logoDP=2.873; NIcor=0.392; NsEucl=0.888; SSD=1.604; NSW=0.900; rcor=57; rNcor=56; rlogoDP=36; rNIcor=44; rNsEucl=48; rSSD=39; rNSW=46; rank_mean=46.571; match_rank=54
a 0 0 0 774 753 120 250 774 843 648 54 0 0 0 0 0
c 0 0 0 66 6 4 6 4 8 12 28 0 0 0 0 0
g 0 0 0 73 5 13 6 4 1 3 18 0 0 0 0 0
t 0 0 0 88 235 862 738 218 148 337 900 0 0 0 0 0
|
CCA1_MA0972.1_JASPAR_shift2 (CCA1_MA0972.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_MA0972.1_JASPAR_shift2.png) |
0.757 |
0.433 |
4.603 |
0.411 |
0.866 |
2.305 |
0.856 |
51 |
54 |
27 |
43 |
60 |
60 |
60 |
50.714 |
59 |
; dyads_test_vs_ctrl_m1 versus CCA1_MA0972.1_JASPAR; m=11/11; ncol2=8; w=8; offset=2; strand=D; shift=2; score=50.7143; --AAATATCT------
; cor=0.757; Ncor=0.433; logoDP=4.603; NIcor=0.411; NsEucl=0.866; SSD=2.305; NSW=0.856; rcor=51; rNcor=54; rlogoDP=27; rNIcor=43; rNsEucl=60; rSSD=60; rNSW=60; rank_mean=50.714; match_rank=59
a 0 0 934 960 985 35 992 1 5 21 0 0 0 0 0 0
c 0 0 1 1 4 0 5 12 991 91 0 0 0 0 0 0
g 0 0 10 37 10 5 1 1 0 14 0 0 0 0 0 0
t 0 0 54 2 1 960 2 986 4 874 0 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
dyads_test_vs_ctrl_m2_shift0 (dyads_test_vs_ctrl_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/dyads_test_vs_ctrl_m2_shift0.png) |
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; dyads_test_vs_ctrl_m2; m=0 (reference); ncol1=10; shift=0; ncol=13; wdGTTTAAww---
; Alignment reference
a 12 9 0 0 0 0 28 28 8 9 0 0 0
c 2 1 0 0 0 0 0 0 4 5 0 0 0
g 6 7 28 0 0 0 0 0 5 2 0 0 0
t 8 11 0 28 28 28 0 0 11 12 0 0 0
|
AT2G20110_M0588_1.02_CISBP_shift2 (AT2G20110_M0588_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT2G20110_M0588_1.02_CISBP_shift2.png) |
0.834 |
0.667 |
7.963 |
0.625 |
0.893 |
1.457 |
0.909 |
27 |
17 |
9 |
17 |
45 |
35 |
40 |
27.143 |
24 |
; dyads_test_vs_ctrl_m2 versus AT2G20110_M0588_1.02_CISBP; m=1/5; ncol2=8; w=8; offset=2; strand=D; shift=2; score=27.1429; --rTTTAAAh---
; cor=0.834; Ncor=0.667; logoDP=7.963; NIcor=0.625; NsEucl=0.893; SSD=1.457; NSW=0.909; rcor=27; rNcor=17; rlogoDP=9; rNIcor=17; rNsEucl=45; rSSD=35; rNSW=40; rank_mean=27.143; match_rank=24
a 0 0 40 0 0 0 80 100 100 25 0 0 0
c 0 0 0 0 0 20 0 0 0 25 0 0 0
g 0 0 40 0 0 0 20 0 0 0 0 0 0
t 0 0 20 100 100 80 0 0 0 50 0 0 0
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TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift3 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift3.png) |
0.865 |
0.551 |
2.666 |
0.100 |
0.895 |
1.088 |
0.922 |
22 |
38 |
39 |
47 |
43 |
25 |
34 |
35.429 |
34 |
; dyads_test_vs_ctrl_m2 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=2/5; ncol2=8; w=7; offset=3; strand=R; shift=3; score=35.4286; ---TTTAAAAG--
; cor=0.865; Ncor=0.551; logoDP=2.666; NIcor=0.100; NsEucl=0.895; SSD=1.088; NSW=0.922; rcor=22; rNcor=38; rlogoDP=39; rNIcor=47; rNsEucl=43; rSSD=25; rNSW=34; rank_mean=35.429; match_rank=34
a 0 0 0 0 0 9 96 78 72 96 8 0 0
c 0 0 0 8 0 0 0 8 8 0 8 0 0
g 0 0 0 1 0 0 0 8 8 0 69 0 0
t 0 0 0 87 96 87 0 2 8 0 11 0 0
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SOL1_M0590_1.02_CISBP_shift2 (SOL1_M0590_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SOL1_M0590_1.02_CISBP_shift2.png) |
0.763 |
0.610 |
6.428 |
0.552 |
0.875 |
2.006 |
0.875 |
47 |
25 |
15 |
28 |
53 |
53 |
55 |
39.429 |
42 |
; dyads_test_vs_ctrl_m2 versus SOL1_M0590_1.02_CISBP; m=3/5; ncol2=8; w=8; offset=2; strand=D; shift=2; score=39.4286; --rTTTrAAw---
; cor=0.763; Ncor=0.610; logoDP=6.428; NIcor=0.552; NsEucl=0.875; SSD=2.006; NSW=0.875; rcor=47; rNcor=25; rlogoDP=15; rNIcor=28; rNsEucl=53; rSSD=53; rNSW=55; rank_mean=39.429; match_rank=42
a 0 0 26 2 0 3 32 98 93 28 0 0 0
c 0 0 10 2 0 15 0 0 0 10 0 0 0
g 0 0 41 0 0 2 61 2 0 0 0 0 0
t 0 0 23 96 100 80 7 0 7 62 0 0 0
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WOX13_WOX13_2_ArabidopsisPBM_shift3 (WOX13_WOX13_2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/WOX13_WOX13_2_ArabidopsisPBM_shift3.png) |
0.769 |
0.414 |
2.144 |
0.364 |
0.873 |
1.586 |
0.887 |
43 |
59 |
41 |
45 |
55 |
37 |
52 |
47.429 |
56 |
; dyads_test_vs_ctrl_m2 versus WOX13_WOX13_2_ArabidopsisPBM; m=4/5; ncol2=10; w=7; offset=3; strand=D; shift=3; score=47.4286; ---tttAATTaam
; cor=0.769; Ncor=0.414; logoDP=2.144; NIcor=0.364; NsEucl=0.873; SSD=1.586; NSW=0.887; rcor=43; rNcor=59; rlogoDP=41; rNIcor=45; rNsEucl=55; rSSD=37; rNSW=52; rank_mean=47.429; match_rank=56
a 0 0 0 22 17 20 81 81 8 11 59 57 27
c 0 0 0 23 15 17 5 2 9 3 4 12 34
g 0 0 0 19 11 4 3 9 2 6 17 15 20
t 0 0 0 36 57 59 11 8 81 80 20 16 19
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fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP_shift2 (fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP_shift2.png) |
0.769 |
0.512 |
2.078 |
0.502 |
0.871 |
2.125 |
0.867 |
44 |
44 |
42 |
37 |
57 |
56 |
58 |
48.286 |
57 |
; dyads_test_vs_ctrl_m2 versus fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP; m=5/5; ncol2=10; w=8; offset=2; strand=D; shift=2; score=48.2857; --dTTTraawww-
; cor=0.769; Ncor=0.512; logoDP=2.078; NIcor=0.502; NsEucl=0.871; SSD=2.125; NSW=0.867; rcor=44; rNcor=44; rlogoDP=42; rNIcor=37; rNsEucl=57; rSSD=56; rNSW=58; rank_mean=48.286; match_rank=57
a 0 0 34 9 12 6 34 56 52 26 25 26 0
c 0 0 10 10 8 24 14 13 14 22 20 19 0
g 0 0 26 6 5 0 45 11 16 15 19 22 0
t 0 0 30 75 75 70 7 20 18 37 36 33 0
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