Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m1_shift3 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift3.png) |
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; oligos_5-7nt_m1; m=0 (reference); ncol1=9; shift=3; ncol=13; ---wmAAGTGsa-
; Alignment reference
a 0 0 0 13 15 36 36 0 0 0 7 13 0
c 0 0 0 6 10 0 0 0 0 0 11 8 0
g 0 0 0 8 5 0 0 36 0 36 11 8 0
t 0 0 0 9 6 0 0 0 36 0 7 7 0
|
DAG2_DAG2_ArabidopsisPBM_shift1 (DAG2_DAG2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DAG2_DAG2_ArabidopsisPBM_shift1.png) |
0.837 |
0.609 |
5.350 |
0.572 |
0.904 |
1.181 |
0.926 |
3 |
10 |
6 |
11 |
5 |
7 |
3 |
6.429 |
1 |
; oligos_5-7nt_m1 versus DAG2_DAG2_ArabidopsisPBM; m=1/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score= 6.4286; -sAwAARGTgr--
; cor=0.837; Ncor=0.609; logoDP=5.350; NIcor=0.572; NsEucl=0.904; SSD=1.181; NSW=0.926; rcor=3; rNcor=10; rlogoDP=6; rNIcor=11; rNsEucl=5; rSSD=7; rNSW=3; rank_mean=6.429; match_rank=1
a 0 16 75 60 99 99 75 0 1 24 39 0 0
c 0 42 3 0 0 0 0 0 20 4 17 0 0
g 0 31 18 1 0 1 25 98 6 56 31 0 0
t 0 11 4 39 1 0 0 2 73 16 13 0 0
|
DOF2.5_MA0977.1_JASPAR_shift2 (DOF2.5_MA0977.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.5_MA0977.1_JASPAR_shift2.png) |
0.844 |
0.591 |
5.215 |
0.549 |
0.893 |
1.125 |
0.920 |
1 |
13 |
8 |
13 |
11 |
5 |
5 |
8.000 |
3 |
; oligos_5-7nt_m1 versus DOF2.5_MA0977.1_JASPAR; m=2/32; ncol2=8; w=7; offset=-1; strand=D; shift=2; score= 8; --AwAARGTg---
; cor=0.844; Ncor=0.591; logoDP=5.215; NIcor=0.549; NsEucl=0.893; SSD=1.125; NSW=0.920; rcor=1; rNcor=13; rlogoDP=8; rNIcor=13; rNsEucl=11; rSSD=5; rNSW=5; rank_mean=8.000; match_rank=3
a 0 0 756 598 990 986 744 4 8 238 0 0 0
c 0 0 26 1 1 1 1 1 198 44 0 0 0
g 0 0 182 12 4 8 254 977 65 557 0 0 0
t 0 0 36 389 5 6 1 18 729 160 0 0 0
|
CDF3_MA0974.1_JASPAR_shift2 (CDF3_MA0974.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF3_MA0974.1_JASPAR_shift2.png) |
0.810 |
0.648 |
4.862 |
0.590 |
0.897 |
1.347 |
0.916 |
11 |
4 |
9 |
9 |
8 |
15 |
6 |
8.857 |
4 |
; oligos_5-7nt_m1 versus CDF3_MA0974.1_JASPAR; m=3/32; ncol2=9; w=8; offset=-1; strand=D; shift=2; score= 8.8571; --awAAAGygm--
; cor=0.810; Ncor=0.648; logoDP=4.862; NIcor=0.590; NsEucl=0.897; SSD=1.347; NSW=0.916; rcor=11; rNcor=4; rlogoDP=9; rNIcor=9; rNsEucl=8; rSSD=15; rNSW=6; rank_mean=8.857; match_rank=4
a 0 0 447 607 994 989 880 19 70 222 286 0 0
c 0 0 143 29 3 5 27 7 291 102 343 0 0
g 0 0 220 65 1 0 83 969 160 495 169 0 0
t 0 0 191 298 2 6 10 6 479 180 202 0 0
|
cdf3_M0651_1.02_CISBP_shift2 (cdf3_M0651_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/cdf3_M0651_1.02_CISBP_shift2.png) |
0.810 |
0.648 |
4.820 |
0.589 |
0.897 |
1.349 |
0.916 |
12 |
5 |
10 |
10 |
9 |
16 |
7 |
9.857 |
5 |
; oligos_5-7nt_m1 versus cdf3_M0651_1.02_CISBP; m=4/32; ncol2=9; w=8; offset=-1; strand=D; shift=2; score= 9.8571; --awAAAGygm--
; cor=0.810; Ncor=0.648; logoDP=4.820; NIcor=0.589; NsEucl=0.897; SSD=1.349; NSW=0.916; rcor=12; rNcor=5; rlogoDP=10; rNIcor=10; rNsEucl=9; rSSD=16; rNSW=7; rank_mean=9.857; match_rank=5
a 0 0 45 61 100 99 88 2 7 22 29 0 0
c 0 0 14 3 0 0 3 1 29 10 34 0 0
g 0 0 22 7 0 0 8 96 16 50 17 0 0
t 0 0 19 29 0 1 1 1 48 18 20 0 0
|
ZAT7_M0373_1.02_CISBP_shift2 (ZAT7_M0373_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ZAT7_M0373_1.02_CISBP_shift2.png) |
0.791 |
0.547 |
5.320 |
0.553 |
0.906 |
1.445 |
0.920 |
19 |
18 |
7 |
12 |
2 |
18 |
4 |
11.429 |
6 |
; oligos_5-7nt_m1 versus ZAT7_M0373_1.02_CISBP; m=5/32; ncol2=13; w=9; offset=-1; strand=D; shift=2; score=11.4286; --mhhbAGTGtrm
; cor=0.791; Ncor=0.547; logoDP=5.320; NIcor=0.553; NsEucl=0.906; SSD=1.445; NSW=0.920; rcor=19; rNcor=18; rlogoDP=7; rNIcor=12; rNsEucl=2; rSSD=18; rNSW=4; rank_mean=11.429; match_rank=6
a 0 0 30 29 27 17 94 0 20 0 6 48 26
c 0 0 32 27 29 27 2 20 0 0 15 17 48
g 0 0 19 17 17 27 2 80 0 100 14 27 8
t 0 0 19 27 27 29 2 0 80 0 65 8 18
|
BHLH112_MA0961.1_JASPAR_rc_shift3 (BHLH112_MA0961.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/BHLH112_MA0961.1_JASPAR_rc_shift3.png) |
0.834 |
0.834 |
4.116 |
0.222 |
0.903 |
1.521 |
0.915 |
4 |
1 |
15 |
33 |
6 |
23 |
8 |
12.857 |
7 |
; oligos_5-7nt_m1 versus BHLH112_MA0961.1_JASPAR_rc; m=6/32; ncol2=9; w=9; offset=0; strand=R; shift=3; score=12.8571; ---gCAAGTGGs-
; cor=0.834; Ncor=0.834; logoDP=4.116; NIcor=0.222; NsEucl=0.903; SSD=1.521; NSW=0.915; rcor=4; rNcor=1; rlogoDP=15; rNIcor=33; rNsEucl=6; rSSD=23; rNSW=8; rank_mean=12.857; match_rank=7
a 0 0 0 223 0 1000 1000 0 0 0 0 222 0
c 0 0 0 217 1000 0 0 0 0 0 0 306 0
g 0 0 0 343 0 0 0 1000 0 823 1000 250 0
t 0 0 0 218 0 0 0 0 1000 177 0 221 0
|
bhlh112_M0229_1.02_CISBP_rc_shift3 (bhlh112_M0229_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/bhlh112_M0229_1.02_CISBP_rc_shift3.png) |
0.834 |
0.834 |
4.118 |
0.223 |
0.903 |
1.525 |
0.915 |
5 |
2 |
14 |
32 |
7 |
24 |
9 |
13.286 |
8 |
; oligos_5-7nt_m1 versus bhlh112_M0229_1.02_CISBP_rc; m=7/32; ncol2=9; w=9; offset=0; strand=R; shift=3; score=13.2857; ---gCAAGTGGs-
; cor=0.834; Ncor=0.834; logoDP=4.118; NIcor=0.223; NsEucl=0.903; SSD=1.525; NSW=0.915; rcor=5; rNcor=2; rlogoDP=14; rNIcor=32; rNsEucl=7; rSSD=24; rNSW=9; rank_mean=13.286; match_rank=8
a 0 0 0 22 0 100 100 0 0 0 0 22 0
c 0 0 0 22 100 0 0 0 0 0 0 31 0
g 0 0 0 34 0 0 0 100 0 82 100 25 0
t 0 0 0 22 0 0 0 0 100 18 0 22 0
|
DOF2.4_MA0982.1_JASPAR_shift2 (DOF2.4_MA0982.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.4_MA0982.1_JASPAR_shift2.png) |
0.809 |
0.485 |
1.998 |
0.450 |
0.877 |
1.089 |
0.909 |
13 |
22 |
23 |
18 |
16 |
2 |
10 |
14.857 |
9 |
; oligos_5-7nt_m1 versus DOF2.4_MA0982.1_JASPAR; m=8/32; ncol2=7; w=6; offset=-1; strand=D; shift=2; score=14.8571; --awAAmGt----
; cor=0.809; Ncor=0.485; logoDP=1.998; NIcor=0.450; NsEucl=0.877; SSD=1.089; NSW=0.909; rcor=13; rNcor=22; rlogoDP=23; rNIcor=18; rNsEucl=16; rSSD=2; rNSW=10; rank_mean=14.857; match_rank=9
a 0 0 381 426 807 815 658 81 177 0 0 0 0
c 0 0 171 90 71 66 252 73 242 0 0 0 0
g 0 0 233 127 18 1 16 762 210 0 0 0 0
t 0 0 215 356 104 118 75 84 371 0 0 0 0
|
AZF2_M0372_1.02_CISBP_shift5 (AZF2_M0372_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AZF2_M0372_1.02_CISBP_shift5.png) |
0.798 |
0.621 |
2.736 |
0.630 |
0.876 |
1.506 |
0.892 |
15 |
6 |
21 |
4 |
18 |
21 |
22 |
15.286 |
10 |
; oligos_5-7nt_m1 versus AZF2_M0372_1.02_CISBP; m=9/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=15.2857; -----gAsTgwr-
; cor=0.798; Ncor=0.621; logoDP=2.736; NIcor=0.630; NsEucl=0.876; SSD=1.506; NSW=0.892; rcor=15; rNcor=6; rlogoDP=21; rNIcor=4; rNsEucl=18; rSSD=21; rNSW=22; rank_mean=15.286; match_rank=10
a 0 0 0 0 0 22 78 0 7 21 30 28 0
c 0 0 0 0 0 23 0 40 7 5 13 23 0
g 0 0 0 0 0 31 10 59 0 65 22 27 0
t 0 0 0 0 0 24 12 1 86 9 35 22 0
|
ATDOF2.4_M0648_1.02_CISBP_shift2 (ATDOF2.4_M0648_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATDOF2.4_M0648_1.02_CISBP_shift2.png) |
0.808 |
0.485 |
1.969 |
0.449 |
0.877 |
1.093 |
0.909 |
14 |
23 |
24 |
19 |
17 |
3 |
11 |
15.857 |
12 |
; oligos_5-7nt_m1 versus ATDOF2.4_M0648_1.02_CISBP; m=10/32; ncol2=7; w=6; offset=-1; strand=D; shift=2; score=15.8571; --awAAaGt----
; cor=0.808; Ncor=0.485; logoDP=1.969; NIcor=0.449; NsEucl=0.877; SSD=1.093; NSW=0.909; rcor=14; rNcor=23; rlogoDP=24; rNIcor=19; rNsEucl=17; rSSD=3; rNSW=11; rank_mean=15.857; match_rank=12
a 0 0 38 43 81 81 66 9 18 0 0 0 0
c 0 0 17 8 7 7 24 7 24 0 0 0 0
g 0 0 23 13 2 0 2 76 21 0 0 0 0
t 0 0 22 36 10 12 8 8 37 0 0 0 0
|
CDF2_M0653_1.02_CISBP_shift1 (CDF2_M0653_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_M0653_1.02_CISBP_shift1.png) |
0.781 |
0.568 |
4.741 |
0.515 |
0.890 |
1.549 |
0.903 |
21 |
15 |
11 |
14 |
12 |
26 |
16 |
16.429 |
13 |
; oligos_5-7nt_m1 versus CDF2_M0653_1.02_CISBP; m=11/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=16.4286; -maWAAAGyrh--
; cor=0.781; Ncor=0.568; logoDP=4.741; NIcor=0.515; NsEucl=0.890; SSD=1.549; NSW=0.903; rcor=21; rNcor=15; rlogoDP=11; rNIcor=14; rNsEucl=12; rSSD=26; rNSW=16; rank_mean=16.429; match_rank=13
a 0 33 61 69 98 98 87 2 5 33 30 0 0
c 0 29 9 2 1 1 3 1 29 8 28 0 0
g 0 23 15 4 0 0 8 97 16 39 16 0 0
t 0 15 15 25 1 1 2 0 50 20 26 0 0
|
CDF2_MA0973.1_JASPAR_shift1 (CDF2_MA0973.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_MA0973.1_JASPAR_shift1.png) |
0.781 |
0.568 |
4.703 |
0.515 |
0.890 |
1.551 |
0.903 |
23 |
16 |
12 |
15 |
13 |
27 |
17 |
17.571 |
15 |
; oligos_5-7nt_m1 versus CDF2_MA0973.1_JASPAR; m=12/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=17.5714; -maWAAAGyrh--
; cor=0.781; Ncor=0.568; logoDP=4.703; NIcor=0.515; NsEucl=0.890; SSD=1.551; NSW=0.903; rcor=23; rNcor=16; rlogoDP=12; rNIcor=15; rNsEucl=13; rSSD=27; rNSW=17; rank_mean=17.571; match_rank=15
a 0 334 608 693 980 979 868 17 53 328 299 0 0
c 0 284 92 16 10 10 29 7 295 77 282 0 0
g 0 235 150 41 4 2 81 969 154 395 155 0 0
t 0 148 150 250 5 9 22 6 498 200 264 0 0
|
e_gw1.149.93.1_M0658_1.02_CISBP_shift1 (e_gw1.149.93.1_M0658_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.149.93.1_M0658_1.02_CISBP_shift1.png) |
0.828 |
0.452 |
1.414 |
0.430 |
0.874 |
1.138 |
0.905 |
7 |
27 |
32 |
22 |
21 |
6 |
15 |
18.571 |
16 |
; oligos_5-7nt_m1 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=13/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=18.5714; -vrwaAmGy----
; cor=0.828; Ncor=0.452; logoDP=1.414; NIcor=0.430; NsEucl=0.874; SSD=1.138; NSW=0.905; rcor=7; rNcor=27; rlogoDP=32; rNIcor=22; rNsEucl=21; rSSD=6; rNSW=15; rank_mean=18.571; match_rank=16
a 0 25 33 40 65 70 57 8 17 0 0 0 0
c 0 26 20 14 13 10 25 8 26 0 0 0 0
g 0 26 25 16 8 5 0 76 22 0 0 0 0
t 0 23 22 30 14 15 18 8 35 0 0 0 0
|
fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift1 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift1.png) |
0.833 |
0.454 |
1.156 |
0.437 |
0.872 |
1.185 |
0.901 |
6 |
25 |
34 |
21 |
22 |
8 |
18 |
19.143 |
17 |
; oligos_5-7nt_m1 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=14/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=19.1429; -sawaamGt----
; cor=0.833; Ncor=0.454; logoDP=1.156; NIcor=0.437; NsEucl=0.872; SSD=1.185; NSW=0.901; rcor=6; rNcor=25; rlogoDP=34; rNIcor=21; rNsEucl=22; rSSD=8; rNSW=18; rank_mean=19.143; match_rank=17
a 0 24 36 41 62 65 55 13 17 0 0 0 0
c 0 26 19 14 14 12 29 9 24 0 0 0 0
g 0 27 23 15 8 6 0 71 21 0 0 0 0
t 0 23 22 30 16 17 16 7 38 0 0 0 0
|
AZF1_M0378_1.02_CISBP_shift5 (AZF1_M0378_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AZF1_M0378_1.02_CISBP_shift5.png) |
0.793 |
0.617 |
1.960 |
0.650 |
0.869 |
1.675 |
0.880 |
17 |
8 |
25 |
2 |
26 |
30 |
28 |
19.429 |
18 |
; oligos_5-7nt_m1 versus AZF1_M0378_1.02_CISBP; m=15/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=19.4286; -----gasTgdr-
; cor=0.793; Ncor=0.617; logoDP=1.960; NIcor=0.650; NsEucl=0.869; SSD=1.675; NSW=0.880; rcor=17; rNcor=8; rlogoDP=25; rNIcor=2; rNsEucl=26; rSSD=30; rNSW=28; rank_mean=19.429; match_rank=18
a 0 0 0 0 0 22 67 0 5 18 26 25 0
c 0 0 0 0 0 24 1 38 23 6 17 24 0
g 0 0 0 0 0 30 13 61 0 61 25 27 0
t 0 0 0 0 0 24 19 1 72 15 32 24 0
|
PBF_M01829_TRANSFAC_rc_shift3 (PBF_M01829_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01829_TRANSFAC_rc_shift3.png) |
0.822 |
0.548 |
0.174 |
-0.107 |
0.876 |
1.115 |
0.907 |
9 |
17 |
36 |
37 |
20 |
4 |
14 |
19.571 |
19 |
; oligos_5-7nt_m1 versus PBF_M01829_TRANSFAC_rc; m=16/32; ncol2=6; w=6; offset=0; strand=R; shift=3; score=19.5714; ---wAAAGk----
; cor=0.822; Ncor=0.548; logoDP=0.174; NIcor=-0.107; NsEucl=0.876; SSD=1.115; NSW=0.907; rcor=9; rNcor=17; rlogoDP=36; rNIcor=37; rNsEucl=20; rSSD=4; rNSW=14; rank_mean=19.571; match_rank=19
a 0 0 0 7 16 16 16 0 1 0 0 0 0
c 0 0 0 2 0 0 0 0 2 0 0 0 0
g 0 0 0 1 0 0 0 16 7 0 0 0 0
t 0 0 0 6 0 0 0 0 6 0 0 0 0
|
PBF_M00355_TRANSFAC_shift0 (PBF_M00355_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M00355_TRANSFAC_shift0.png) |
0.761 |
0.507 |
6.085 |
0.470 |
0.883 |
1.757 |
0.890 |
30 |
21 |
3 |
16 |
15 |
32 |
24 |
20.143 |
20 |
; oligos_5-7nt_m1 versus PBF_M00355_TRANSFAC; m=17/32; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=20.1429; wwdwAAAGhgm--
; cor=0.761; Ncor=0.507; logoDP=6.085; NIcor=0.470; NsEucl=0.883; SSD=1.757; NSW=0.890; rcor=30; rNcor=21; rlogoDP=3; rNIcor=16; rNsEucl=15; rSSD=32; rNSW=24; rank_mean=20.143; match_rank=20
a 7 7 4 9 16 16 16 0 4 3 7 0 0
c 3 2 3 1 0 0 0 0 7 3 5 0 0
g 2 1 4 0 0 0 0 16 1 9 3 0 0
t 4 6 5 6 0 0 0 0 4 1 1 0 0
|
RHL41_M0377_1.02_CISBP_shift5 (RHL41_M0377_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RHL41_M0377_1.02_CISBP_shift5.png) |
0.789 |
0.614 |
1.916 |
0.634 |
0.867 |
1.724 |
0.877 |
20 |
9 |
26 |
3 |
27 |
31 |
29 |
20.714 |
21 |
; oligos_5-7nt_m1 versus RHL41_M0377_1.02_CISBP; m=18/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=20.7143; -----rwSTrwd-
; cor=0.789; Ncor=0.614; logoDP=1.916; NIcor=0.634; NsEucl=0.867; SSD=1.724; NSW=0.877; rcor=20; rNcor=9; rlogoDP=26; rNIcor=3; rNsEucl=27; rSSD=31; rNSW=29; rank_mean=20.714; match_rank=21
a 0 0 0 0 0 25 63 2 1 26 28 26 0
c 0 0 0 0 0 24 2 28 24 12 20 23 0
g 0 0 0 0 0 30 8 69 0 45 24 26 0
t 0 0 0 0 0 21 27 1 75 17 28 25 0
|
DOF5.6_M0657_1.02_CISBP_shift1 (DOF5.6_M0657_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_M0657_1.02_CISBP_shift1.png) |
0.781 |
0.426 |
2.964 |
0.381 |
0.870 |
1.209 |
0.899 |
22 |
33 |
19 |
28 |
23 |
9 |
19 |
21.857 |
22 |
; oligos_5-7nt_m1 versus DOF5.6_M0657_1.02_CISBP; m=19/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=21.8571; -vawAAmGy----
; cor=0.781; Ncor=0.426; logoDP=2.964; NIcor=0.381; NsEucl=0.870; SSD=1.209; NSW=0.899; rcor=22; rNcor=33; rlogoDP=19; rNIcor=28; rNsEucl=23; rSSD=9; rNSW=19; rank_mean=21.857; match_rank=22
a 0 25 36 43 95 93 61 5 15 0 0 0 0
c 0 26 17 8 3 4 31 3 25 0 0 0 0
g 0 26 23 11 0 0 6 88 21 0 0 0 0
t 0 23 24 38 2 3 2 4 39 0 0 0 0
|
PBF_MA0064.1_JASPAR_shift4 (PBF_MA0064.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_MA0064.1_JASPAR_shift4.png) |
0.797 |
0.443 |
5.972 |
0.405 |
0.841 |
1.261 |
0.874 |
16 |
30 |
4 |
26 |
37 |
11 |
31 |
22.143 |
23 |
; oligos_5-7nt_m1 versus PBF_MA0064.1_JASPAR; m=20/32; ncol2=5; w=5; offset=1; strand=D; shift=4; score=22.1429; ----AAAGy----
; cor=0.797; Ncor=0.443; logoDP=5.972; NIcor=0.405; NsEucl=0.841; SSD=1.261; NSW=0.874; rcor=16; rNcor=30; rlogoDP=4; rNIcor=26; rNsEucl=37; rSSD=11; rNSW=31; rank_mean=22.143; match_rank=23
a 0 0 0 0 16 16 16 0 1 0 0 0 0
c 0 0 0 0 0 0 0 0 9 0 0 0 0
g 0 0 0 0 0 0 0 16 1 0 0 0 0
t 0 0 0 0 0 0 0 0 5 0 0 0 0
|
AtMYB117_II_AthaMYB_shift6 (AtMYB117_II_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB117_II_AthaMYB_shift6.png) |
0.813 |
0.443 |
7.706 |
0.422 |
0.854 |
1.529 |
0.873 |
10 |
29 |
1 |
24 |
35 |
25 |
32 |
22.286 |
24 |
; oligos_5-7nt_m1 versus AtMYB117_II_AthaMYB; m=21/32; ncol2=8; w=6; offset=3; strand=D; shift=6; score=22.2857; ------AGTGGTT
; cor=0.813; Ncor=0.443; logoDP=7.706; NIcor=0.422; NsEucl=0.854; SSD=1.529; NSW=0.873; rcor=10; rNcor=29; rlogoDP=1; rNIcor=24; rNsEucl=35; rSSD=25; rNSW=32; rank_mean=22.286; match_rank=24
a 0 0 0 0 0 0 1 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 1 0 1 1 0 0
t 0 0 0 0 0 0 0 0 1 0 0 1 1
|
ZAT18_ZAT18_ArabidopsisPBM_shift5 (ZAT18_ZAT18_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ZAT18_ZAT18_ArabidopsisPBM_shift5.png) |
0.775 |
0.452 |
3.025 |
0.421 |
0.876 |
1.512 |
0.892 |
26 |
26 |
18 |
25 |
19 |
22 |
23 |
22.714 |
25 |
; oligos_5-7nt_m1 versus ZAT18_ZAT18_ArabidopsisPBM; m=22/32; ncol2=10; w=7; offset=2; strand=D; shift=5; score=22.7143; -----dAGTGCAC
; cor=0.775; Ncor=0.452; logoDP=3.025; NIcor=0.421; NsEucl=0.876; SSD=1.512; NSW=0.892; rcor=26; rNcor=26; rlogoDP=18; rNIcor=25; rNsEucl=19; rSSD=22; rNSW=23; rank_mean=22.714; match_rank=25
a 0 0 0 0 0 32 71 4 3 10 4 72 4
c 0 0 0 0 0 3 4 5 18 5 81 6 88
g 0 0 0 0 0 34 8 88 7 81 6 18 5
t 0 0 0 0 0 31 17 3 72 4 9 4 3
|
DOF5.6_MA0983.1_JASPAR_shift1 (DOF5.6_MA0983.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_MA0983.1_JASPAR_shift1.png) |
0.780 |
0.426 |
2.962 |
0.380 |
0.870 |
1.211 |
0.899 |
24 |
34 |
20 |
29 |
24 |
10 |
20 |
23.000 |
26 |
; oligos_5-7nt_m1 versus DOF5.6_MA0983.1_JASPAR; m=23/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score= 23; -vawAAmGt----
; cor=0.780; Ncor=0.426; logoDP=2.962; NIcor=0.380; NsEucl=0.870; SSD=1.211; NSW=0.899; rcor=24; rNcor=34; rlogoDP=20; rNIcor=29; rNsEucl=24; rSSD=10; rNSW=20; rank_mean=23.000; match_rank=26
a 0 254 364 432 955 928 613 50 152 0 0 0 0
c 0 257 170 84 35 40 308 28 247 0 0 0 0
g 0 262 227 108 1 1 56 884 213 0 0 0 0
t 0 228 239 376 10 32 24 38 388 0 0 0 0
|
Dof3_MA0021.1_JASPAR_shift4 (Dof3_MA0021.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof3_MA0021.1_JASPAR_shift4.png) |
0.777 |
0.518 |
6.206 |
0.462 |
0.852 |
1.585 |
0.868 |
25 |
20 |
2 |
17 |
36 |
28 |
35 |
23.286 |
27 |
; oligos_5-7nt_m1 versus Dof3_MA0021.1_JASPAR; m=24/32; ncol2=6; w=6; offset=1; strand=D; shift=4; score=23.2857; ----AAAGyv---
; cor=0.777; Ncor=0.518; logoDP=6.206; NIcor=0.462; NsEucl=0.852; SSD=1.585; NSW=0.868; rcor=25; rNcor=20; rlogoDP=2; rNIcor=17; rNsEucl=36; rSSD=28; rNSW=35; rank_mean=23.286; match_rank=27
a 0 0 0 0 21 21 21 0 0 6 0 0 0
c 0 0 0 0 0 0 0 0 10 6 0 0 0
g 0 0 0 0 0 0 0 21 3 9 0 0 0
t 0 0 0 0 0 0 0 0 8 0 0 0 0
|
ZFP5_M0369_1.02_CISBP_shift1 (ZFP5_M0369_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ZFP5_M0369_1.02_CISBP_shift1.png) |
0.793 |
0.432 |
1.569 |
0.445 |
0.865 |
1.319 |
0.890 |
18 |
32 |
30 |
20 |
28 |
14 |
25 |
23.857 |
28 |
; oligos_5-7nt_m1 versus ZFP5_M0369_1.02_CISBP; m=25/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=23.8571; -wkbdAwst----
; cor=0.793; Ncor=0.432; logoDP=1.569; NIcor=0.445; NsEucl=0.865; SSD=1.319; NSW=0.890; rcor=18; rNcor=32; rlogoDP=30; rNIcor=20; rNsEucl=28; rSSD=14; rNSW=25; rank_mean=23.857; match_rank=28
a 0 26 21 23 26 75 66 5 19 0 0 0 0
c 0 24 24 25 18 5 0 53 22 0 0 0 0
g 0 24 27 25 31 9 6 41 6 0 0 0 0
t 0 26 28 27 25 11 28 1 53 0 0 0 0
|
STZ_M0370_1.02_CISBP_shift5 (STZ_M0370_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/STZ_M0370_1.02_CISBP_shift5.png) |
0.771 |
0.599 |
1.666 |
0.610 |
0.864 |
1.808 |
0.871 |
27 |
11 |
29 |
8 |
29 |
33 |
33 |
24.286 |
29 |
; oligos_5-7nt_m1 versus STZ_M0370_1.02_CISBP; m=26/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=24.2857; -----gAsTrwr-
; cor=0.771; Ncor=0.599; logoDP=1.666; NIcor=0.610; NsEucl=0.864; SSD=1.808; NSW=0.871; rcor=27; rNcor=11; rlogoDP=29; rNIcor=8; rNsEucl=29; rSSD=33; rNSW=33; rank_mean=24.286; match_rank=29
a 0 0 0 0 0 23 68 8 7 28 30 28 0
c 0 0 0 0 0 23 4 38 15 6 16 23 0
g 0 0 0 0 0 31 10 52 0 51 22 25 0
t 0 0 0 0 0 23 18 2 78 15 32 24 0
|
AT3G53600_M0374_1.02_CISBP_shift5 (AT3G53600_M0374_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G53600_M0374_1.02_CISBP_shift5.png) |
0.768 |
0.597 |
1.717 |
0.615 |
0.863 |
1.835 |
0.869 |
28 |
12 |
28 |
5 |
30 |
35 |
34 |
24.571 |
30 |
; oligos_5-7nt_m1 versus AT3G53600_M0374_1.02_CISBP; m=27/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=24.5714; -----gwsTrwd-
; cor=0.768; Ncor=0.597; logoDP=1.717; NIcor=0.615; NsEucl=0.863; SSD=1.835; NSW=0.869; rcor=28; rNcor=12; rlogoDP=28; rNIcor=5; rNsEucl=30; rSSD=35; rNSW=34; rank_mean=24.571; match_rank=30
a 0 0 0 0 0 24 59 2 3 27 28 25 0
c 0 0 0 0 0 23 2 36 18 9 18 24 0
g 0 0 0 0 0 30 13 59 0 48 24 26 0
t 0 0 0 0 0 23 26 3 79 16 30 25 0
|
e_gw1.392.16.1_M0660_1.02_CISBP_shift1 (e_gw1.392.16.1_M0660_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.392.16.1_M0660_1.02_CISBP_shift1.png) |
0.751 |
0.478 |
3.113 |
0.430 |
0.870 |
1.668 |
0.881 |
38 |
24 |
17 |
23 |
25 |
29 |
27 |
26.143 |
31 |
; oligos_5-7nt_m1 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=28/32; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=26.1429; -vrwAAaGyd---
; cor=0.751; Ncor=0.478; logoDP=3.113; NIcor=0.430; NsEucl=0.870; SSD=1.668; NSW=0.881; rcor=38; rNcor=24; rlogoDP=17; rNIcor=23; rNsEucl=25; rSSD=29; rNSW=27; rank_mean=26.143; match_rank=31
a 0 25 33 48 86 93 67 7 14 28 0 0 0
c 0 26 19 7 6 3 15 3 28 16 0 0 0
g 0 26 26 12 2 0 5 90 20 30 0 0 0
t 0 23 22 33 6 4 13 0 38 26 0 0 0
|
MNB1A_MA0053.1_JASPAR_shift4 (MNB1A_MA0053.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/MNB1A_MA0053.1_JASPAR_shift4.png) |
0.759 |
0.422 |
5.940 |
0.389 |
0.827 |
1.505 |
0.850 |
31 |
35 |
5 |
27 |
38 |
20 |
38 |
27.714 |
34 |
; oligos_5-7nt_m1 versus MNB1A_MA0053.1_JASPAR; m=29/32; ncol2=5; w=5; offset=1; strand=D; shift=4; score=27.7143; ----AAAGc----
; cor=0.759; Ncor=0.422; logoDP=5.940; NIcor=0.389; NsEucl=0.827; SSD=1.505; NSW=0.850; rcor=31; rNcor=35; rlogoDP=5; rNIcor=27; rNsEucl=38; rSSD=20; rNSW=38; rank_mean=27.714; match_rank=34
a 0 0 0 0 15 15 15 0 3 0 0 0 0
c 0 0 0 0 0 0 0 0 9 0 0 0 0
g 0 0 0 0 0 0 0 15 0 0 0 0 0
t 0 0 0 0 0 0 0 0 3 0 0 0 0
|
AT5G04390_M0375_1.02_CISBP_shift5 (AT5G04390_M0375_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT5G04390_M0375_1.02_CISBP_shift5.png) |
0.754 |
0.586 |
1.398 |
0.611 |
0.858 |
1.963 |
0.860 |
34 |
14 |
33 |
7 |
33 |
38 |
37 |
28.000 |
35 |
; oligos_5-7nt_m1 versus AT5G04390_M0375_1.02_CISBP; m=30/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score= 28; -----rasYrwm-
; cor=0.754; Ncor=0.586; logoDP=1.398; NIcor=0.611; NsEucl=0.858; SSD=1.963; NSW=0.860; rcor=34; rNcor=14; rlogoDP=33; rNIcor=7; rNsEucl=33; rSSD=38; rNSW=37; rank_mean=28.000; match_rank=35
a 0 0 0 0 0 25 66 6 6 32 30 27 0
c 0 0 0 0 0 24 3 34 25 8 19 25 0
g 0 0 0 0 0 29 8 56 0 40 23 24 0
t 0 0 0 0 0 22 23 4 69 20 28 24 0
|
AT1G29160_M0646_1.02_CISBP_shift1 (AT1G29160_M0646_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT1G29160_M0646_1.02_CISBP_shift1.png) |
0.754 |
0.411 |
4.210 |
0.368 |
0.856 |
1.494 |
0.875 |
35 |
36 |
13 |
31 |
34 |
19 |
30 |
28.286 |
36 |
; oligos_5-7nt_m1 versus AT1G29160_M0646_1.02_CISBP; m=31/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=28.2857; -rwWAAmGT----
; cor=0.754; Ncor=0.411; logoDP=4.210; NIcor=0.368; NsEucl=0.856; SSD=1.494; NSW=0.875; rcor=35; rNcor=36; rlogoDP=13; rNIcor=31; rNsEucl=34; rSSD=19; rNSW=30; rank_mean=28.286; match_rank=36
a 0 25 61 27 100 91 41 5 6 0 0 0 0
c 0 0 0 0 0 0 54 0 12 0 0 0 0
g 0 58 0 0 0 9 0 95 0 0 0 0 0
t 0 17 39 73 0 0 5 0 82 0 0 0 0
|
ADOF2_M0649_1.02_CISBP_shift1 (ADOF2_M0649_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ADOF2_M0649_1.02_CISBP_shift1.png) |
0.752 |
0.410 |
1.776 |
0.374 |
0.863 |
1.349 |
0.888 |
36 |
37 |
27 |
30 |
31 |
17 |
26 |
29.143 |
37 |
; oligos_5-7nt_m1 versus ADOF2_M0649_1.02_CISBP; m=32/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=29.1429; -srwAAmGy----
; cor=0.752; Ncor=0.410; logoDP=1.776; NIcor=0.374; NsEucl=0.863; SSD=1.349; NSW=0.888; rcor=36; rNcor=37; rlogoDP=27; rNIcor=30; rNsEucl=31; rSSD=17; rNSW=26; rank_mean=29.143; match_rank=37
a 0 24 31 35 81 80 50 11 19 0 0 0 0
c 0 26 20 15 7 9 40 3 26 0 0 0 0
g 0 27 25 17 4 2 2 78 21 0 0 0 0
t 0 23 24 33 8 9 8 8 34 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m4_shift2 (oligos_5-7nt_m4) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m4_shift2.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m4; m=0 (reference); ncol1=11; shift=2; ncol=13; --bsATCCGGGws
; Alignment reference
a 0 0 5 5 22 0 0 0 1 2 3 7 5
c 0 0 6 8 0 2 22 23 1 1 1 5 6
g 0 0 7 6 2 1 1 1 22 20 20 4 8
t 0 0 6 5 0 21 1 0 0 1 0 8 5
|
LBD16_LBD16_ArabidopsisPBM_shift4 (LBD16_LBD16_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LBD16_LBD16_ArabidopsisPBM_shift4.png) |
0.823 |
0.617 |
3.533 |
0.612 |
0.912 |
1.266 |
0.930 |
8 |
7 |
16 |
6 |
1 |
12 |
2 |
7.429 |
2 |
; oligos_5-7nt_m4 versus LBD16_LBD16_ArabidopsisPBM; m=1/6; ncol2=10; w=9; offset=2; strand=D; shift=4; score= 7.4286; ----wyCCGGrrw
; cor=0.823; Ncor=0.617; logoDP=3.533; NIcor=0.612; NsEucl=0.912; SSD=1.266; NSW=0.930; rcor=8; rNcor=7; rlogoDP=16; rNIcor=6; rNsEucl=1; rSSD=12; rNSW=2; rank_mean=7.429; match_rank=2
a 0 0 0 0 31 6 2 1 4 4 47 44 48
c 0 0 0 0 20 28 90 97 7 18 5 6 13
g 0 0 0 0 6 7 8 1 86 69 44 28 10
t 0 0 0 0 43 59 0 1 3 9 4 22 29
|
fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc_shift0 (fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc_shift0.png) |
0.837 |
0.451 |
0.081 |
-0.056 |
0.904 |
0.902 |
0.936 |
2 |
28 |
38 |
35 |
4 |
1 |
1 |
15.571 |
11 |
; oligos_5-7nt_m4 versus fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc; m=2/6; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=15.5714; csytATCcr----
; cor=0.837; Ncor=0.451; logoDP=0.081; NIcor=-0.056; NsEucl=0.904; SSD=0.902; NSW=0.936; rcor=2; rNcor=28; rlogoDP=38; rNIcor=35; rNsEucl=4; rSSD=1; rNSW=1; rank_mean=15.571; match_rank=11
a 17 19 17 19 93 0 3 9 29 0 0 0 0
c 42 37 31 23 3 17 93 55 21 0 0 0 0
g 20 25 9 15 4 7 3 14 31 0 0 0 0
t 21 19 43 43 0 76 1 22 19 0 0 0 0
|
LBD4_M1274_1.02_CISBP_shift3 (LBD4_M1274_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LBD4_M1274_1.02_CISBP_shift3.png) |
0.755 |
0.686 |
1.430 |
0.678 |
0.904 |
1.836 |
0.908 |
33 |
3 |
31 |
1 |
3 |
36 |
12 |
17.000 |
14 |
; oligos_5-7nt_m4 versus LBD4_M1274_1.02_CISBP; m=3/6; ncol2=10; w=10; offset=1; strand=D; shift=3; score= 17; ---rahsCGgsrr
; cor=0.755; Ncor=0.686; logoDP=1.430; NIcor=0.678; NsEucl=0.904; SSD=1.836; NSW=0.908; rcor=33; rNcor=3; rlogoDP=31; rNIcor=1; rNsEucl=3; rSSD=36; rNSW=12; rank_mean=17.000; match_rank=14
a 0 0 0 39 48 25 20 7 6 9 21 28 30
c 0 0 0 20 11 36 37 77 14 23 30 17 19
g 0 0 0 29 24 13 37 14 78 64 36 37 29
t 0 0 0 12 17 26 6 2 2 4 13 18 22
|
AT5G08520_M1339_1.02_CISBP_rc_shift0 (AT5G08520_M1339_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT5G08520_M1339_1.02_CISBP_rc_shift0.png) |
0.755 |
0.407 |
0.088 |
-0.076 |
0.885 |
1.291 |
0.908 |
32 |
38 |
37 |
36 |
14 |
13 |
13 |
26.143 |
32 |
; oligos_5-7nt_m4 versus AT5G08520_M1339_1.02_CISBP_rc; m=4/6; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=26.1429; ccytATCyd----
; cor=0.755; Ncor=0.407; logoDP=0.088; NIcor=-0.076; NsEucl=0.885; SSD=1.291; NSW=0.908; rcor=32; rNcor=38; rlogoDP=37; rNIcor=36; rNsEucl=14; rSSD=13; rNSW=13; rank_mean=26.143; match_rank=32
a 20 18 17 18 98 2 4 15 29 0 0 0 0
c 35 37 25 15 0 12 89 42 21 0 0 0 0
g 21 24 8 13 1 8 3 15 25 0 0 0 0
t 24 21 50 54 1 78 4 28 25 0 0 0 0
|
AT1G74840_M1322_1.02_CISBP_rc_shift0 (AT1G74840_M1322_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT1G74840_M1322_1.02_CISBP_rc_shift0.png) |
0.766 |
0.530 |
0.371 |
-0.185 |
0.894 |
1.834 |
0.898 |
29 |
19 |
35 |
38 |
10 |
34 |
21 |
26.571 |
33 |
; oligos_5-7nt_m4 versus AT1G74840_M1322_1.02_CISBP_rc; m=5/6; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=26.5714; dGwTATCCgga--
; cor=0.766; Ncor=0.530; logoDP=0.371; NIcor=-0.185; NsEucl=0.894; SSD=1.834; NSW=0.898; rcor=29; rNcor=19; rlogoDP=35; rNIcor=38; rNsEucl=10; rSSD=34; rNSW=21; rank_mean=26.571; match_rank=33
a 26 7 58 0 100 0 0 0 19 18 31 0 0
c 16 7 2 0 0 0 100 90 9 18 23 0 0
g 33 80 2 8 0 0 0 0 63 45 23 0 0
t 25 6 38 92 0 100 0 10 9 19 23 0 0
|
PK23829.1_M1311_1.02_CISBP_rc_shift1 (PK23829.1_M1311_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK23829.1_M1311_1.02_CISBP_rc_shift1.png) |
0.751 |
0.438 |
2.598 |
0.157 |
0.862 |
1.867 |
0.867 |
37 |
31 |
22 |
34 |
32 |
37 |
36 |
32.714 |
38 |
; oligos_5-7nt_m4 versus PK23829.1_M1311_1.02_CISBP_rc; m=6/6; ncol2=8; w=7; offset=-1; strand=R; shift=1; score=32.7143; -vTTATCCr----
; cor=0.751; Ncor=0.438; logoDP=2.598; NIcor=0.157; NsEucl=0.862; SSD=1.867; NSW=0.867; rcor=37; rNcor=31; rlogoDP=22; rNIcor=34; rNsEucl=32; rSSD=37; rNSW=36; rank_mean=32.714; match_rank=38
a 0 26 13 0 100 0 0 0 48 0 0 0 0
c 0 35 9 0 0 0 100 97 0 0 0 0 0
g 0 35 0 0 0 0 0 0 33 0 0 0 0
t 0 4 78 100 0 100 0 3 19 0 0 0 0
|