One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 13/regulon13.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o 13/regulon13.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m1_shift3 ; 33 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m1_shift3 (oligos_5-7nt_m1)
; oligos_5-7nt_m1; m=0 (reference); ncol1=9; shift=3; ncol=13; ---wmAAGTGsa- ; Alignment reference a 0 0 0 13 15 36 36 0 0 0 7 13 0 c 0 0 0 6 10 0 0 0 0 0 11 8 0 g 0 0 0 8 5 0 0 36 0 36 11 8 0 t 0 0 0 9 6 0 0 0 36 0 7 7 0

DAG2_DAG2_ArabidopsisPBM_shift1 (DAG2_DAG2_ArabidopsisPBM) 0.837 0.609 5.350 0.572 0.904 1.181 0.926 3 10 6 11 5 7 3 6.429 1
; oligos_5-7nt_m1 versus DAG2_DAG2_ArabidopsisPBM; m=1/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score= 6.4286; -sAwAARGTgr-- ; cor=0.837; Ncor=0.609; logoDP=5.350; NIcor=0.572; NsEucl=0.904; SSD=1.181; NSW=0.926; rcor=3; rNcor=10; rlogoDP=6; rNIcor=11; rNsEucl=5; rSSD=7; rNSW=3; rank_mean=6.429; match_rank=1 a 0 16 75 60 99 99 75 0 1 24 39 0 0 c 0 42 3 0 0 0 0 0 20 4 17 0 0 g 0 31 18 1 0 1 25 98 6 56 31 0 0 t 0 11 4 39 1 0 0 2 73 16 13 0 0

DOF2.5_MA0977.1_JASPAR_shift2 (DOF2.5_MA0977.1_JASPAR) 0.844 0.591 5.215 0.549 0.893 1.125 0.920 1 13 8 13 11 5 5 8.000 3
; oligos_5-7nt_m1 versus DOF2.5_MA0977.1_JASPAR; m=2/32; ncol2=8; w=7; offset=-1; strand=D; shift=2; score= 8; --AwAARGTg--- ; cor=0.844; Ncor=0.591; logoDP=5.215; NIcor=0.549; NsEucl=0.893; SSD=1.125; NSW=0.920; rcor=1; rNcor=13; rlogoDP=8; rNIcor=13; rNsEucl=11; rSSD=5; rNSW=5; rank_mean=8.000; match_rank=3 a 0 0 756 598 990 986 744 4 8 238 0 0 0 c 0 0 26 1 1 1 1 1 198 44 0 0 0 g 0 0 182 12 4 8 254 977 65 557 0 0 0 t 0 0 36 389 5 6 1 18 729 160 0 0 0

CDF3_MA0974.1_JASPAR_shift2 (CDF3_MA0974.1_JASPAR) 0.810 0.648 4.862 0.590 0.897 1.347 0.916 11 4 9 9 8 15 6 8.857 4
; oligos_5-7nt_m1 versus CDF3_MA0974.1_JASPAR; m=3/32; ncol2=9; w=8; offset=-1; strand=D; shift=2; score= 8.8571; --awAAAGygm-- ; cor=0.810; Ncor=0.648; logoDP=4.862; NIcor=0.590; NsEucl=0.897; SSD=1.347; NSW=0.916; rcor=11; rNcor=4; rlogoDP=9; rNIcor=9; rNsEucl=8; rSSD=15; rNSW=6; rank_mean=8.857; match_rank=4 a 0 0 447 607 994 989 880 19 70 222 286 0 0 c 0 0 143 29 3 5 27 7 291 102 343 0 0 g 0 0 220 65 1 0 83 969 160 495 169 0 0 t 0 0 191 298 2 6 10 6 479 180 202 0 0

cdf3_M0651_1.02_CISBP_shift2 (cdf3_M0651_1.02_CISBP) 0.810 0.648 4.820 0.589 0.897 1.349 0.916 12 5 10 10 9 16 7 9.857 5
; oligos_5-7nt_m1 versus cdf3_M0651_1.02_CISBP; m=4/32; ncol2=9; w=8; offset=-1; strand=D; shift=2; score= 9.8571; --awAAAGygm-- ; cor=0.810; Ncor=0.648; logoDP=4.820; NIcor=0.589; NsEucl=0.897; SSD=1.349; NSW=0.916; rcor=12; rNcor=5; rlogoDP=10; rNIcor=10; rNsEucl=9; rSSD=16; rNSW=7; rank_mean=9.857; match_rank=5 a 0 0 45 61 100 99 88 2 7 22 29 0 0 c 0 0 14 3 0 0 3 1 29 10 34 0 0 g 0 0 22 7 0 0 8 96 16 50 17 0 0 t 0 0 19 29 0 1 1 1 48 18 20 0 0

ZAT7_M0373_1.02_CISBP_shift2 (ZAT7_M0373_1.02_CISBP) 0.791 0.547 5.320 0.553 0.906 1.445 0.920 19 18 7 12 2 18 4 11.429 6
; oligos_5-7nt_m1 versus ZAT7_M0373_1.02_CISBP; m=5/32; ncol2=13; w=9; offset=-1; strand=D; shift=2; score=11.4286; --mhhbAGTGtrm ; cor=0.791; Ncor=0.547; logoDP=5.320; NIcor=0.553; NsEucl=0.906; SSD=1.445; NSW=0.920; rcor=19; rNcor=18; rlogoDP=7; rNIcor=12; rNsEucl=2; rSSD=18; rNSW=4; rank_mean=11.429; match_rank=6 a 0 0 30 29 27 17 94 0 20 0 6 48 26 c 0 0 32 27 29 27 2 20 0 0 15 17 48 g 0 0 19 17 17 27 2 80 0 100 14 27 8 t 0 0 19 27 27 29 2 0 80 0 65 8 18

BHLH112_MA0961.1_JASPAR_rc_shift3 (BHLH112_MA0961.1_JASPAR_rc) 0.834 0.834 4.116 0.222 0.903 1.521 0.915 4 1 15 33 6 23 8 12.857 7
; oligos_5-7nt_m1 versus BHLH112_MA0961.1_JASPAR_rc; m=6/32; ncol2=9; w=9; offset=0; strand=R; shift=3; score=12.8571; ---gCAAGTGGs- ; cor=0.834; Ncor=0.834; logoDP=4.116; NIcor=0.222; NsEucl=0.903; SSD=1.521; NSW=0.915; rcor=4; rNcor=1; rlogoDP=15; rNIcor=33; rNsEucl=6; rSSD=23; rNSW=8; rank_mean=12.857; match_rank=7 a 0 0 0 223 0 1000 1000 0 0 0 0 222 0 c 0 0 0 217 1000 0 0 0 0 0 0 306 0 g 0 0 0 343 0 0 0 1000 0 823 1000 250 0 t 0 0 0 218 0 0 0 0 1000 177 0 221 0

bhlh112_M0229_1.02_CISBP_rc_shift3 (bhlh112_M0229_1.02_CISBP_rc) 0.834 0.834 4.118 0.223 0.903 1.525 0.915 5 2 14 32 7 24 9 13.286 8
; oligos_5-7nt_m1 versus bhlh112_M0229_1.02_CISBP_rc; m=7/32; ncol2=9; w=9; offset=0; strand=R; shift=3; score=13.2857; ---gCAAGTGGs- ; cor=0.834; Ncor=0.834; logoDP=4.118; NIcor=0.223; NsEucl=0.903; SSD=1.525; NSW=0.915; rcor=5; rNcor=2; rlogoDP=14; rNIcor=32; rNsEucl=7; rSSD=24; rNSW=9; rank_mean=13.286; match_rank=8 a 0 0 0 22 0 100 100 0 0 0 0 22 0 c 0 0 0 22 100 0 0 0 0 0 0 31 0 g 0 0 0 34 0 0 0 100 0 82 100 25 0 t 0 0 0 22 0 0 0 0 100 18 0 22 0

DOF2.4_MA0982.1_JASPAR_shift2 (DOF2.4_MA0982.1_JASPAR) 0.809 0.485 1.998 0.450 0.877 1.089 0.909 13 22 23 18 16 2 10 14.857 9
; oligos_5-7nt_m1 versus DOF2.4_MA0982.1_JASPAR; m=8/32; ncol2=7; w=6; offset=-1; strand=D; shift=2; score=14.8571; --awAAmGt---- ; cor=0.809; Ncor=0.485; logoDP=1.998; NIcor=0.450; NsEucl=0.877; SSD=1.089; NSW=0.909; rcor=13; rNcor=22; rlogoDP=23; rNIcor=18; rNsEucl=16; rSSD=2; rNSW=10; rank_mean=14.857; match_rank=9 a 0 0 381 426 807 815 658 81 177 0 0 0 0 c 0 0 171 90 71 66 252 73 242 0 0 0 0 g 0 0 233 127 18 1 16 762 210 0 0 0 0 t 0 0 215 356 104 118 75 84 371 0 0 0 0

AZF2_M0372_1.02_CISBP_shift5 (AZF2_M0372_1.02_CISBP) 0.798 0.621 2.736 0.630 0.876 1.506 0.892 15 6 21 4 18 21 22 15.286 10
; oligos_5-7nt_m1 versus AZF2_M0372_1.02_CISBP; m=9/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=15.2857; -----gAsTgwr- ; cor=0.798; Ncor=0.621; logoDP=2.736; NIcor=0.630; NsEucl=0.876; SSD=1.506; NSW=0.892; rcor=15; rNcor=6; rlogoDP=21; rNIcor=4; rNsEucl=18; rSSD=21; rNSW=22; rank_mean=15.286; match_rank=10 a 0 0 0 0 0 22 78 0 7 21 30 28 0 c 0 0 0 0 0 23 0 40 7 5 13 23 0 g 0 0 0 0 0 31 10 59 0 65 22 27 0 t 0 0 0 0 0 24 12 1 86 9 35 22 0

ATDOF2.4_M0648_1.02_CISBP_shift2 (ATDOF2.4_M0648_1.02_CISBP) 0.808 0.485 1.969 0.449 0.877 1.093 0.909 14 23 24 19 17 3 11 15.857 12
; oligos_5-7nt_m1 versus ATDOF2.4_M0648_1.02_CISBP; m=10/32; ncol2=7; w=6; offset=-1; strand=D; shift=2; score=15.8571; --awAAaGt---- ; cor=0.808; Ncor=0.485; logoDP=1.969; NIcor=0.449; NsEucl=0.877; SSD=1.093; NSW=0.909; rcor=14; rNcor=23; rlogoDP=24; rNIcor=19; rNsEucl=17; rSSD=3; rNSW=11; rank_mean=15.857; match_rank=12 a 0 0 38 43 81 81 66 9 18 0 0 0 0 c 0 0 17 8 7 7 24 7 24 0 0 0 0 g 0 0 23 13 2 0 2 76 21 0 0 0 0 t 0 0 22 36 10 12 8 8 37 0 0 0 0

CDF2_M0653_1.02_CISBP_shift1 (CDF2_M0653_1.02_CISBP) 0.781 0.568 4.741 0.515 0.890 1.549 0.903 21 15 11 14 12 26 16 16.429 13
; oligos_5-7nt_m1 versus CDF2_M0653_1.02_CISBP; m=11/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=16.4286; -maWAAAGyrh-- ; cor=0.781; Ncor=0.568; logoDP=4.741; NIcor=0.515; NsEucl=0.890; SSD=1.549; NSW=0.903; rcor=21; rNcor=15; rlogoDP=11; rNIcor=14; rNsEucl=12; rSSD=26; rNSW=16; rank_mean=16.429; match_rank=13 a 0 33 61 69 98 98 87 2 5 33 30 0 0 c 0 29 9 2 1 1 3 1 29 8 28 0 0 g 0 23 15 4 0 0 8 97 16 39 16 0 0 t 0 15 15 25 1 1 2 0 50 20 26 0 0

CDF2_MA0973.1_JASPAR_shift1 (CDF2_MA0973.1_JASPAR) 0.781 0.568 4.703 0.515 0.890 1.551 0.903 23 16 12 15 13 27 17 17.571 15
; oligos_5-7nt_m1 versus CDF2_MA0973.1_JASPAR; m=12/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=17.5714; -maWAAAGyrh-- ; cor=0.781; Ncor=0.568; logoDP=4.703; NIcor=0.515; NsEucl=0.890; SSD=1.551; NSW=0.903; rcor=23; rNcor=16; rlogoDP=12; rNIcor=15; rNsEucl=13; rSSD=27; rNSW=17; rank_mean=17.571; match_rank=15 a 0 334 608 693 980 979 868 17 53 328 299 0 0 c 0 284 92 16 10 10 29 7 295 77 282 0 0 g 0 235 150 41 4 2 81 969 154 395 155 0 0 t 0 148 150 250 5 9 22 6 498 200 264 0 0

e_gw1.149.93.1_M0658_1.02_CISBP_shift1 (e_gw1.149.93.1_M0658_1.02_CISBP) 0.828 0.452 1.414 0.430 0.874 1.138 0.905 7 27 32 22 21 6 15 18.571 16
; oligos_5-7nt_m1 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=13/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=18.5714; -vrwaAmGy---- ; cor=0.828; Ncor=0.452; logoDP=1.414; NIcor=0.430; NsEucl=0.874; SSD=1.138; NSW=0.905; rcor=7; rNcor=27; rlogoDP=32; rNIcor=22; rNsEucl=21; rSSD=6; rNSW=15; rank_mean=18.571; match_rank=16 a 0 25 33 40 65 70 57 8 17 0 0 0 0 c 0 26 20 14 13 10 25 8 26 0 0 0 0 g 0 26 25 16 8 5 0 76 22 0 0 0 0 t 0 23 22 30 14 15 18 8 35 0 0 0 0

fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift1 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP) 0.833 0.454 1.156 0.437 0.872 1.185 0.901 6 25 34 21 22 8 18 19.143 17
; oligos_5-7nt_m1 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=14/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=19.1429; -sawaamGt---- ; cor=0.833; Ncor=0.454; logoDP=1.156; NIcor=0.437; NsEucl=0.872; SSD=1.185; NSW=0.901; rcor=6; rNcor=25; rlogoDP=34; rNIcor=21; rNsEucl=22; rSSD=8; rNSW=18; rank_mean=19.143; match_rank=17 a 0 24 36 41 62 65 55 13 17 0 0 0 0 c 0 26 19 14 14 12 29 9 24 0 0 0 0 g 0 27 23 15 8 6 0 71 21 0 0 0 0 t 0 23 22 30 16 17 16 7 38 0 0 0 0

AZF1_M0378_1.02_CISBP_shift5 (AZF1_M0378_1.02_CISBP) 0.793 0.617 1.960 0.650 0.869 1.675 0.880 17 8 25 2 26 30 28 19.429 18
; oligos_5-7nt_m1 versus AZF1_M0378_1.02_CISBP; m=15/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=19.4286; -----gasTgdr- ; cor=0.793; Ncor=0.617; logoDP=1.960; NIcor=0.650; NsEucl=0.869; SSD=1.675; NSW=0.880; rcor=17; rNcor=8; rlogoDP=25; rNIcor=2; rNsEucl=26; rSSD=30; rNSW=28; rank_mean=19.429; match_rank=18 a 0 0 0 0 0 22 67 0 5 18 26 25 0 c 0 0 0 0 0 24 1 38 23 6 17 24 0 g 0 0 0 0 0 30 13 61 0 61 25 27 0 t 0 0 0 0 0 24 19 1 72 15 32 24 0

PBF_M01829_TRANSFAC_rc_shift3 (PBF_M01829_TRANSFAC_rc) 0.822 0.548 0.174 -0.107 0.876 1.115 0.907 9 17 36 37 20 4 14 19.571 19
; oligos_5-7nt_m1 versus PBF_M01829_TRANSFAC_rc; m=16/32; ncol2=6; w=6; offset=0; strand=R; shift=3; score=19.5714; ---wAAAGk---- ; cor=0.822; Ncor=0.548; logoDP=0.174; NIcor=-0.107; NsEucl=0.876; SSD=1.115; NSW=0.907; rcor=9; rNcor=17; rlogoDP=36; rNIcor=37; rNsEucl=20; rSSD=4; rNSW=14; rank_mean=19.571; match_rank=19 a 0 0 0 7 16 16 16 0 1 0 0 0 0 c 0 0 0 2 0 0 0 0 2 0 0 0 0 g 0 0 0 1 0 0 0 16 7 0 0 0 0 t 0 0 0 6 0 0 0 0 6 0 0 0 0

PBF_M00355_TRANSFAC_shift0 (PBF_M00355_TRANSFAC) 0.761 0.507 6.085 0.470 0.883 1.757 0.890 30 21 3 16 15 32 24 20.143 20
; oligos_5-7nt_m1 versus PBF_M00355_TRANSFAC; m=17/32; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=20.1429; wwdwAAAGhgm-- ; cor=0.761; Ncor=0.507; logoDP=6.085; NIcor=0.470; NsEucl=0.883; SSD=1.757; NSW=0.890; rcor=30; rNcor=21; rlogoDP=3; rNIcor=16; rNsEucl=15; rSSD=32; rNSW=24; rank_mean=20.143; match_rank=20 a 7 7 4 9 16 16 16 0 4 3 7 0 0 c 3 2 3 1 0 0 0 0 7 3 5 0 0 g 2 1 4 0 0 0 0 16 1 9 3 0 0 t 4 6 5 6 0 0 0 0 4 1 1 0 0

RHL41_M0377_1.02_CISBP_shift5 (RHL41_M0377_1.02_CISBP) 0.789 0.614 1.916 0.634 0.867 1.724 0.877 20 9 26 3 27 31 29 20.714 21
; oligos_5-7nt_m1 versus RHL41_M0377_1.02_CISBP; m=18/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=20.7143; -----rwSTrwd- ; cor=0.789; Ncor=0.614; logoDP=1.916; NIcor=0.634; NsEucl=0.867; SSD=1.724; NSW=0.877; rcor=20; rNcor=9; rlogoDP=26; rNIcor=3; rNsEucl=27; rSSD=31; rNSW=29; rank_mean=20.714; match_rank=21 a 0 0 0 0 0 25 63 2 1 26 28 26 0 c 0 0 0 0 0 24 2 28 24 12 20 23 0 g 0 0 0 0 0 30 8 69 0 45 24 26 0 t 0 0 0 0 0 21 27 1 75 17 28 25 0

DOF5.6_M0657_1.02_CISBP_shift1 (DOF5.6_M0657_1.02_CISBP) 0.781 0.426 2.964 0.381 0.870 1.209 0.899 22 33 19 28 23 9 19 21.857 22
; oligos_5-7nt_m1 versus DOF5.6_M0657_1.02_CISBP; m=19/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=21.8571; -vawAAmGy---- ; cor=0.781; Ncor=0.426; logoDP=2.964; NIcor=0.381; NsEucl=0.870; SSD=1.209; NSW=0.899; rcor=22; rNcor=33; rlogoDP=19; rNIcor=28; rNsEucl=23; rSSD=9; rNSW=19; rank_mean=21.857; match_rank=22 a 0 25 36 43 95 93 61 5 15 0 0 0 0 c 0 26 17 8 3 4 31 3 25 0 0 0 0 g 0 26 23 11 0 0 6 88 21 0 0 0 0 t 0 23 24 38 2 3 2 4 39 0 0 0 0

PBF_MA0064.1_JASPAR_shift4 (PBF_MA0064.1_JASPAR) 0.797 0.443 5.972 0.405 0.841 1.261 0.874 16 30 4 26 37 11 31 22.143 23
; oligos_5-7nt_m1 versus PBF_MA0064.1_JASPAR; m=20/32; ncol2=5; w=5; offset=1; strand=D; shift=4; score=22.1429; ----AAAGy---- ; cor=0.797; Ncor=0.443; logoDP=5.972; NIcor=0.405; NsEucl=0.841; SSD=1.261; NSW=0.874; rcor=16; rNcor=30; rlogoDP=4; rNIcor=26; rNsEucl=37; rSSD=11; rNSW=31; rank_mean=22.143; match_rank=23 a 0 0 0 0 16 16 16 0 1 0 0 0 0 c 0 0 0 0 0 0 0 0 9 0 0 0 0 g 0 0 0 0 0 0 0 16 1 0 0 0 0 t 0 0 0 0 0 0 0 0 5 0 0 0 0

AtMYB117_II_AthaMYB_shift6 (AtMYB117_II_AthaMYB) 0.813 0.443 7.706 0.422 0.854 1.529 0.873 10 29 1 24 35 25 32 22.286 24
; oligos_5-7nt_m1 versus AtMYB117_II_AthaMYB; m=21/32; ncol2=8; w=6; offset=3; strand=D; shift=6; score=22.2857; ------AGTGGTT ; cor=0.813; Ncor=0.443; logoDP=7.706; NIcor=0.422; NsEucl=0.854; SSD=1.529; NSW=0.873; rcor=10; rNcor=29; rlogoDP=1; rNIcor=24; rNsEucl=35; rSSD=25; rNSW=32; rank_mean=22.286; match_rank=24 a 0 0 0 0 0 0 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1 0 1 1 0 0 t 0 0 0 0 0 0 0 0 1 0 0 1 1

ZAT18_ZAT18_ArabidopsisPBM_shift5 (ZAT18_ZAT18_ArabidopsisPBM) 0.775 0.452 3.025 0.421 0.876 1.512 0.892 26 26 18 25 19 22 23 22.714 25
; oligos_5-7nt_m1 versus ZAT18_ZAT18_ArabidopsisPBM; m=22/32; ncol2=10; w=7; offset=2; strand=D; shift=5; score=22.7143; -----dAGTGCAC ; cor=0.775; Ncor=0.452; logoDP=3.025; NIcor=0.421; NsEucl=0.876; SSD=1.512; NSW=0.892; rcor=26; rNcor=26; rlogoDP=18; rNIcor=25; rNsEucl=19; rSSD=22; rNSW=23; rank_mean=22.714; match_rank=25 a 0 0 0 0 0 32 71 4 3 10 4 72 4 c 0 0 0 0 0 3 4 5 18 5 81 6 88 g 0 0 0 0 0 34 8 88 7 81 6 18 5 t 0 0 0 0 0 31 17 3 72 4 9 4 3

DOF5.6_MA0983.1_JASPAR_shift1 (DOF5.6_MA0983.1_JASPAR) 0.780 0.426 2.962 0.380 0.870 1.211 0.899 24 34 20 29 24 10 20 23.000 26
; oligos_5-7nt_m1 versus DOF5.6_MA0983.1_JASPAR; m=23/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score= 23; -vawAAmGt---- ; cor=0.780; Ncor=0.426; logoDP=2.962; NIcor=0.380; NsEucl=0.870; SSD=1.211; NSW=0.899; rcor=24; rNcor=34; rlogoDP=20; rNIcor=29; rNsEucl=24; rSSD=10; rNSW=20; rank_mean=23.000; match_rank=26 a 0 254 364 432 955 928 613 50 152 0 0 0 0 c 0 257 170 84 35 40 308 28 247 0 0 0 0 g 0 262 227 108 1 1 56 884 213 0 0 0 0 t 0 228 239 376 10 32 24 38 388 0 0 0 0

Dof3_MA0021.1_JASPAR_shift4 (Dof3_MA0021.1_JASPAR) 0.777 0.518 6.206 0.462 0.852 1.585 0.868 25 20 2 17 36 28 35 23.286 27
; oligos_5-7nt_m1 versus Dof3_MA0021.1_JASPAR; m=24/32; ncol2=6; w=6; offset=1; strand=D; shift=4; score=23.2857; ----AAAGyv--- ; cor=0.777; Ncor=0.518; logoDP=6.206; NIcor=0.462; NsEucl=0.852; SSD=1.585; NSW=0.868; rcor=25; rNcor=20; rlogoDP=2; rNIcor=17; rNsEucl=36; rSSD=28; rNSW=35; rank_mean=23.286; match_rank=27 a 0 0 0 0 21 21 21 0 0 6 0 0 0 c 0 0 0 0 0 0 0 0 10 6 0 0 0 g 0 0 0 0 0 0 0 21 3 9 0 0 0 t 0 0 0 0 0 0 0 0 8 0 0 0 0

ZFP5_M0369_1.02_CISBP_shift1 (ZFP5_M0369_1.02_CISBP) 0.793 0.432 1.569 0.445 0.865 1.319 0.890 18 32 30 20 28 14 25 23.857 28
; oligos_5-7nt_m1 versus ZFP5_M0369_1.02_CISBP; m=25/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=23.8571; -wkbdAwst---- ; cor=0.793; Ncor=0.432; logoDP=1.569; NIcor=0.445; NsEucl=0.865; SSD=1.319; NSW=0.890; rcor=18; rNcor=32; rlogoDP=30; rNIcor=20; rNsEucl=28; rSSD=14; rNSW=25; rank_mean=23.857; match_rank=28 a 0 26 21 23 26 75 66 5 19 0 0 0 0 c 0 24 24 25 18 5 0 53 22 0 0 0 0 g 0 24 27 25 31 9 6 41 6 0 0 0 0 t 0 26 28 27 25 11 28 1 53 0 0 0 0

STZ_M0370_1.02_CISBP_shift5 (STZ_M0370_1.02_CISBP) 0.771 0.599 1.666 0.610 0.864 1.808 0.871 27 11 29 8 29 33 33 24.286 29
; oligos_5-7nt_m1 versus STZ_M0370_1.02_CISBP; m=26/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=24.2857; -----gAsTrwr- ; cor=0.771; Ncor=0.599; logoDP=1.666; NIcor=0.610; NsEucl=0.864; SSD=1.808; NSW=0.871; rcor=27; rNcor=11; rlogoDP=29; rNIcor=8; rNsEucl=29; rSSD=33; rNSW=33; rank_mean=24.286; match_rank=29 a 0 0 0 0 0 23 68 8 7 28 30 28 0 c 0 0 0 0 0 23 4 38 15 6 16 23 0 g 0 0 0 0 0 31 10 52 0 51 22 25 0 t 0 0 0 0 0 23 18 2 78 15 32 24 0

AT3G53600_M0374_1.02_CISBP_shift5 (AT3G53600_M0374_1.02_CISBP) 0.768 0.597 1.717 0.615 0.863 1.835 0.869 28 12 28 5 30 35 34 24.571 30
; oligos_5-7nt_m1 versus AT3G53600_M0374_1.02_CISBP; m=27/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=24.5714; -----gwsTrwd- ; cor=0.768; Ncor=0.597; logoDP=1.717; NIcor=0.615; NsEucl=0.863; SSD=1.835; NSW=0.869; rcor=28; rNcor=12; rlogoDP=28; rNIcor=5; rNsEucl=30; rSSD=35; rNSW=34; rank_mean=24.571; match_rank=30 a 0 0 0 0 0 24 59 2 3 27 28 25 0 c 0 0 0 0 0 23 2 36 18 9 18 24 0 g 0 0 0 0 0 30 13 59 0 48 24 26 0 t 0 0 0 0 0 23 26 3 79 16 30 25 0

e_gw1.392.16.1_M0660_1.02_CISBP_shift1 (e_gw1.392.16.1_M0660_1.02_CISBP) 0.751 0.478 3.113 0.430 0.870 1.668 0.881 38 24 17 23 25 29 27 26.143 31
; oligos_5-7nt_m1 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=28/32; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=26.1429; -vrwAAaGyd--- ; cor=0.751; Ncor=0.478; logoDP=3.113; NIcor=0.430; NsEucl=0.870; SSD=1.668; NSW=0.881; rcor=38; rNcor=24; rlogoDP=17; rNIcor=23; rNsEucl=25; rSSD=29; rNSW=27; rank_mean=26.143; match_rank=31 a 0 25 33 48 86 93 67 7 14 28 0 0 0 c 0 26 19 7 6 3 15 3 28 16 0 0 0 g 0 26 26 12 2 0 5 90 20 30 0 0 0 t 0 23 22 33 6 4 13 0 38 26 0 0 0

MNB1A_MA0053.1_JASPAR_shift4 (MNB1A_MA0053.1_JASPAR) 0.759 0.422 5.940 0.389 0.827 1.505 0.850 31 35 5 27 38 20 38 27.714 34
; oligos_5-7nt_m1 versus MNB1A_MA0053.1_JASPAR; m=29/32; ncol2=5; w=5; offset=1; strand=D; shift=4; score=27.7143; ----AAAGc---- ; cor=0.759; Ncor=0.422; logoDP=5.940; NIcor=0.389; NsEucl=0.827; SSD=1.505; NSW=0.850; rcor=31; rNcor=35; rlogoDP=5; rNIcor=27; rNsEucl=38; rSSD=20; rNSW=38; rank_mean=27.714; match_rank=34 a 0 0 0 0 15 15 15 0 3 0 0 0 0 c 0 0 0 0 0 0 0 0 9 0 0 0 0 g 0 0 0 0 0 0 0 15 0 0 0 0 0 t 0 0 0 0 0 0 0 0 3 0 0 0 0

AT5G04390_M0375_1.02_CISBP_shift5 (AT5G04390_M0375_1.02_CISBP) 0.754 0.586 1.398 0.611 0.858 1.963 0.860 34 14 33 7 33 38 37 28.000 35
; oligos_5-7nt_m1 versus AT5G04390_M0375_1.02_CISBP; m=30/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score= 28; -----rasYrwm- ; cor=0.754; Ncor=0.586; logoDP=1.398; NIcor=0.611; NsEucl=0.858; SSD=1.963; NSW=0.860; rcor=34; rNcor=14; rlogoDP=33; rNIcor=7; rNsEucl=33; rSSD=38; rNSW=37; rank_mean=28.000; match_rank=35 a 0 0 0 0 0 25 66 6 6 32 30 27 0 c 0 0 0 0 0 24 3 34 25 8 19 25 0 g 0 0 0 0 0 29 8 56 0 40 23 24 0 t 0 0 0 0 0 22 23 4 69 20 28 24 0

AT1G29160_M0646_1.02_CISBP_shift1 (AT1G29160_M0646_1.02_CISBP) 0.754 0.411 4.210 0.368 0.856 1.494 0.875 35 36 13 31 34 19 30 28.286 36
; oligos_5-7nt_m1 versus AT1G29160_M0646_1.02_CISBP; m=31/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=28.2857; -rwWAAmGT---- ; cor=0.754; Ncor=0.411; logoDP=4.210; NIcor=0.368; NsEucl=0.856; SSD=1.494; NSW=0.875; rcor=35; rNcor=36; rlogoDP=13; rNIcor=31; rNsEucl=34; rSSD=19; rNSW=30; rank_mean=28.286; match_rank=36 a 0 25 61 27 100 91 41 5 6 0 0 0 0 c 0 0 0 0 0 0 54 0 12 0 0 0 0 g 0 58 0 0 0 9 0 95 0 0 0 0 0 t 0 17 39 73 0 0 5 0 82 0 0 0 0

ADOF2_M0649_1.02_CISBP_shift1 (ADOF2_M0649_1.02_CISBP) 0.752 0.410 1.776 0.374 0.863 1.349 0.888 36 37 27 30 31 17 26 29.143 37
; oligos_5-7nt_m1 versus ADOF2_M0649_1.02_CISBP; m=32/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=29.1429; -srwAAmGy---- ; cor=0.752; Ncor=0.410; logoDP=1.776; NIcor=0.374; NsEucl=0.863; SSD=1.349; NSW=0.888; rcor=36; rNcor=37; rlogoDP=27; rNIcor=30; rNsEucl=31; rSSD=17; rNSW=26; rank_mean=29.143; match_rank=37 a 0 24 31 35 81 80 50 11 19 0 0 0 0 c 0 26 20 15 7 9 40 3 26 0 0 0 0 g 0 27 25 17 4 2 2 78 21 0 0 0 0 t 0 23 24 33 8 9 8 8 34 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m1_shift3 (oligos_5-7nt_m1)																	; oligos_5-7nt_m1; m=0 (reference); ncol1=9; shift=3; ncol=13; ---wmAAGTGsa- ; Alignment reference a 0 0 0 13 15 36 36 0 0 0 7 13 0 c 0 0 0 6 10 0 0 0 0 0 11 8 0 g 0 0 0 8 5 0 0 36 0 36 11 8 0 t 0 0 0 9 6 0 0 0 36 0 7 7 0
DAG2_DAG2_ArabidopsisPBM_shift1 (DAG2_DAG2_ArabidopsisPBM)	0.837	0.609	5.350	0.572	0.904	1.181	0.926	3	10	6	11	5	7	3	6.429	1	; oligos_5-7nt_m1 versus DAG2_DAG2_ArabidopsisPBM; m=1/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score= 6.4286; -sAwAARGTgr-- ; cor=0.837; Ncor=0.609; logoDP=5.350; NIcor=0.572; NsEucl=0.904; SSD=1.181; NSW=0.926; rcor=3; rNcor=10; rlogoDP=6; rNIcor=11; rNsEucl=5; rSSD=7; rNSW=3; rank_mean=6.429; match_rank=1 a 0 16 75 60 99 99 75 0 1 24 39 0 0 c 0 42 3 0 0 0 0 0 20 4 17 0 0 g 0 31 18 1 0 1 25 98 6 56 31 0 0 t 0 11 4 39 1 0 0 2 73 16 13 0 0
DOF2.5_MA0977.1_JASPAR_shift2 (DOF2.5_MA0977.1_JASPAR)	0.844	0.591	5.215	0.549	0.893	1.125	0.920	1	13	8	13	11	5	5	8.000	3	; oligos_5-7nt_m1 versus DOF2.5_MA0977.1_JASPAR; m=2/32; ncol2=8; w=7; offset=-1; strand=D; shift=2; score= 8; --AwAARGTg--- ; cor=0.844; Ncor=0.591; logoDP=5.215; NIcor=0.549; NsEucl=0.893; SSD=1.125; NSW=0.920; rcor=1; rNcor=13; rlogoDP=8; rNIcor=13; rNsEucl=11; rSSD=5; rNSW=5; rank_mean=8.000; match_rank=3 a 0 0 756 598 990 986 744 4 8 238 0 0 0 c 0 0 26 1 1 1 1 1 198 44 0 0 0 g 0 0 182 12 4 8 254 977 65 557 0 0 0 t 0 0 36 389 5 6 1 18 729 160 0 0 0
CDF3_MA0974.1_JASPAR_shift2 (CDF3_MA0974.1_JASPAR)	0.810	0.648	4.862	0.590	0.897	1.347	0.916	11	4	9	9	8	15	6	8.857	4	; oligos_5-7nt_m1 versus CDF3_MA0974.1_JASPAR; m=3/32; ncol2=9; w=8; offset=-1; strand=D; shift=2; score= 8.8571; --awAAAGygm-- ; cor=0.810; Ncor=0.648; logoDP=4.862; NIcor=0.590; NsEucl=0.897; SSD=1.347; NSW=0.916; rcor=11; rNcor=4; rlogoDP=9; rNIcor=9; rNsEucl=8; rSSD=15; rNSW=6; rank_mean=8.857; match_rank=4 a 0 0 447 607 994 989 880 19 70 222 286 0 0 c 0 0 143 29 3 5 27 7 291 102 343 0 0 g 0 0 220 65 1 0 83 969 160 495 169 0 0 t 0 0 191 298 2 6 10 6 479 180 202 0 0
cdf3_M0651_1.02_CISBP_shift2 (cdf3_M0651_1.02_CISBP)	0.810	0.648	4.820	0.589	0.897	1.349	0.916	12	5	10	10	9	16	7	9.857	5	; oligos_5-7nt_m1 versus cdf3_M0651_1.02_CISBP; m=4/32; ncol2=9; w=8; offset=-1; strand=D; shift=2; score= 9.8571; --awAAAGygm-- ; cor=0.810; Ncor=0.648; logoDP=4.820; NIcor=0.589; NsEucl=0.897; SSD=1.349; NSW=0.916; rcor=12; rNcor=5; rlogoDP=10; rNIcor=10; rNsEucl=9; rSSD=16; rNSW=7; rank_mean=9.857; match_rank=5 a 0 0 45 61 100 99 88 2 7 22 29 0 0 c 0 0 14 3 0 0 3 1 29 10 34 0 0 g 0 0 22 7 0 0 8 96 16 50 17 0 0 t 0 0 19 29 0 1 1 1 48 18 20 0 0
ZAT7_M0373_1.02_CISBP_shift2 (ZAT7_M0373_1.02_CISBP)	0.791	0.547	5.320	0.553	0.906	1.445	0.920	19	18	7	12	2	18	4	11.429	6	; oligos_5-7nt_m1 versus ZAT7_M0373_1.02_CISBP; m=5/32; ncol2=13; w=9; offset=-1; strand=D; shift=2; score=11.4286; --mhhbAGTGtrm ; cor=0.791; Ncor=0.547; logoDP=5.320; NIcor=0.553; NsEucl=0.906; SSD=1.445; NSW=0.920; rcor=19; rNcor=18; rlogoDP=7; rNIcor=12; rNsEucl=2; rSSD=18; rNSW=4; rank_mean=11.429; match_rank=6 a 0 0 30 29 27 17 94 0 20 0 6 48 26 c 0 0 32 27 29 27 2 20 0 0 15 17 48 g 0 0 19 17 17 27 2 80 0 100 14 27 8 t 0 0 19 27 27 29 2 0 80 0 65 8 18
BHLH112_MA0961.1_JASPAR_rc_shift3 (BHLH112_MA0961.1_JASPAR_rc)	0.834	0.834	4.116	0.222	0.903	1.521	0.915	4	1	15	33	6	23	8	12.857	7	; oligos_5-7nt_m1 versus BHLH112_MA0961.1_JASPAR_rc; m=6/32; ncol2=9; w=9; offset=0; strand=R; shift=3; score=12.8571; ---gCAAGTGGs- ; cor=0.834; Ncor=0.834; logoDP=4.116; NIcor=0.222; NsEucl=0.903; SSD=1.521; NSW=0.915; rcor=4; rNcor=1; rlogoDP=15; rNIcor=33; rNsEucl=6; rSSD=23; rNSW=8; rank_mean=12.857; match_rank=7 a 0 0 0 223 0 1000 1000 0 0 0 0 222 0 c 0 0 0 217 1000 0 0 0 0 0 0 306 0 g 0 0 0 343 0 0 0 1000 0 823 1000 250 0 t 0 0 0 218 0 0 0 0 1000 177 0 221 0
bhlh112_M0229_1.02_CISBP_rc_shift3 (bhlh112_M0229_1.02_CISBP_rc)	0.834	0.834	4.118	0.223	0.903	1.525	0.915	5	2	14	32	7	24	9	13.286	8	; oligos_5-7nt_m1 versus bhlh112_M0229_1.02_CISBP_rc; m=7/32; ncol2=9; w=9; offset=0; strand=R; shift=3; score=13.2857; ---gCAAGTGGs- ; cor=0.834; Ncor=0.834; logoDP=4.118; NIcor=0.223; NsEucl=0.903; SSD=1.525; NSW=0.915; rcor=5; rNcor=2; rlogoDP=14; rNIcor=32; rNsEucl=7; rSSD=24; rNSW=9; rank_mean=13.286; match_rank=8 a 0 0 0 22 0 100 100 0 0 0 0 22 0 c 0 0 0 22 100 0 0 0 0 0 0 31 0 g 0 0 0 34 0 0 0 100 0 82 100 25 0 t 0 0 0 22 0 0 0 0 100 18 0 22 0
DOF2.4_MA0982.1_JASPAR_shift2 (DOF2.4_MA0982.1_JASPAR)	0.809	0.485	1.998	0.450	0.877	1.089	0.909	13	22	23	18	16	2	10	14.857	9	; oligos_5-7nt_m1 versus DOF2.4_MA0982.1_JASPAR; m=8/32; ncol2=7; w=6; offset=-1; strand=D; shift=2; score=14.8571; --awAAmGt---- ; cor=0.809; Ncor=0.485; logoDP=1.998; NIcor=0.450; NsEucl=0.877; SSD=1.089; NSW=0.909; rcor=13; rNcor=22; rlogoDP=23; rNIcor=18; rNsEucl=16; rSSD=2; rNSW=10; rank_mean=14.857; match_rank=9 a 0 0 381 426 807 815 658 81 177 0 0 0 0 c 0 0 171 90 71 66 252 73 242 0 0 0 0 g 0 0 233 127 18 1 16 762 210 0 0 0 0 t 0 0 215 356 104 118 75 84 371 0 0 0 0
AZF2_M0372_1.02_CISBP_shift5 (AZF2_M0372_1.02_CISBP)	0.798	0.621	2.736	0.630	0.876	1.506	0.892	15	6	21	4	18	21	22	15.286	10	; oligos_5-7nt_m1 versus AZF2_M0372_1.02_CISBP; m=9/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=15.2857; -----gAsTgwr- ; cor=0.798; Ncor=0.621; logoDP=2.736; NIcor=0.630; NsEucl=0.876; SSD=1.506; NSW=0.892; rcor=15; rNcor=6; rlogoDP=21; rNIcor=4; rNsEucl=18; rSSD=21; rNSW=22; rank_mean=15.286; match_rank=10 a 0 0 0 0 0 22 78 0 7 21 30 28 0 c 0 0 0 0 0 23 0 40 7 5 13 23 0 g 0 0 0 0 0 31 10 59 0 65 22 27 0 t 0 0 0 0 0 24 12 1 86 9 35 22 0
ATDOF2.4_M0648_1.02_CISBP_shift2 (ATDOF2.4_M0648_1.02_CISBP)	0.808	0.485	1.969	0.449	0.877	1.093	0.909	14	23	24	19	17	3	11	15.857	12	; oligos_5-7nt_m1 versus ATDOF2.4_M0648_1.02_CISBP; m=10/32; ncol2=7; w=6; offset=-1; strand=D; shift=2; score=15.8571; --awAAaGt---- ; cor=0.808; Ncor=0.485; logoDP=1.969; NIcor=0.449; NsEucl=0.877; SSD=1.093; NSW=0.909; rcor=14; rNcor=23; rlogoDP=24; rNIcor=19; rNsEucl=17; rSSD=3; rNSW=11; rank_mean=15.857; match_rank=12 a 0 0 38 43 81 81 66 9 18 0 0 0 0 c 0 0 17 8 7 7 24 7 24 0 0 0 0 g 0 0 23 13 2 0 2 76 21 0 0 0 0 t 0 0 22 36 10 12 8 8 37 0 0 0 0
CDF2_M0653_1.02_CISBP_shift1 (CDF2_M0653_1.02_CISBP)	0.781	0.568	4.741	0.515	0.890	1.549	0.903	21	15	11	14	12	26	16	16.429	13	; oligos_5-7nt_m1 versus CDF2_M0653_1.02_CISBP; m=11/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=16.4286; -maWAAAGyrh-- ; cor=0.781; Ncor=0.568; logoDP=4.741; NIcor=0.515; NsEucl=0.890; SSD=1.549; NSW=0.903; rcor=21; rNcor=15; rlogoDP=11; rNIcor=14; rNsEucl=12; rSSD=26; rNSW=16; rank_mean=16.429; match_rank=13 a 0 33 61 69 98 98 87 2 5 33 30 0 0 c 0 29 9 2 1 1 3 1 29 8 28 0 0 g 0 23 15 4 0 0 8 97 16 39 16 0 0 t 0 15 15 25 1 1 2 0 50 20 26 0 0
CDF2_MA0973.1_JASPAR_shift1 (CDF2_MA0973.1_JASPAR)	0.781	0.568	4.703	0.515	0.890	1.551	0.903	23	16	12	15	13	27	17	17.571	15	; oligos_5-7nt_m1 versus CDF2_MA0973.1_JASPAR; m=12/32; ncol2=10; w=8; offset=-2; strand=D; shift=1; score=17.5714; -maWAAAGyrh-- ; cor=0.781; Ncor=0.568; logoDP=4.703; NIcor=0.515; NsEucl=0.890; SSD=1.551; NSW=0.903; rcor=23; rNcor=16; rlogoDP=12; rNIcor=15; rNsEucl=13; rSSD=27; rNSW=17; rank_mean=17.571; match_rank=15 a 0 334 608 693 980 979 868 17 53 328 299 0 0 c 0 284 92 16 10 10 29 7 295 77 282 0 0 g 0 235 150 41 4 2 81 969 154 395 155 0 0 t 0 148 150 250 5 9 22 6 498 200 264 0 0
e_gw1.149.93.1_M0658_1.02_CISBP_shift1 (e_gw1.149.93.1_M0658_1.02_CISBP)	0.828	0.452	1.414	0.430	0.874	1.138	0.905	7	27	32	22	21	6	15	18.571	16	; oligos_5-7nt_m1 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=13/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=18.5714; -vrwaAmGy---- ; cor=0.828; Ncor=0.452; logoDP=1.414; NIcor=0.430; NsEucl=0.874; SSD=1.138; NSW=0.905; rcor=7; rNcor=27; rlogoDP=32; rNIcor=22; rNsEucl=21; rSSD=6; rNSW=15; rank_mean=18.571; match_rank=16 a 0 25 33 40 65 70 57 8 17 0 0 0 0 c 0 26 20 14 13 10 25 8 26 0 0 0 0 g 0 26 25 16 8 5 0 76 22 0 0 0 0 t 0 23 22 30 14 15 18 8 35 0 0 0 0
fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift1 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP)	0.833	0.454	1.156	0.437	0.872	1.185	0.901	6	25	34	21	22	8	18	19.143	17	; oligos_5-7nt_m1 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=14/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=19.1429; -sawaamGt---- ; cor=0.833; Ncor=0.454; logoDP=1.156; NIcor=0.437; NsEucl=0.872; SSD=1.185; NSW=0.901; rcor=6; rNcor=25; rlogoDP=34; rNIcor=21; rNsEucl=22; rSSD=8; rNSW=18; rank_mean=19.143; match_rank=17 a 0 24 36 41 62 65 55 13 17 0 0 0 0 c 0 26 19 14 14 12 29 9 24 0 0 0 0 g 0 27 23 15 8 6 0 71 21 0 0 0 0 t 0 23 22 30 16 17 16 7 38 0 0 0 0
AZF1_M0378_1.02_CISBP_shift5 (AZF1_M0378_1.02_CISBP)	0.793	0.617	1.960	0.650	0.869	1.675	0.880	17	8	25	2	26	30	28	19.429	18	; oligos_5-7nt_m1 versus AZF1_M0378_1.02_CISBP; m=15/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=19.4286; -----gasTgdr- ; cor=0.793; Ncor=0.617; logoDP=1.960; NIcor=0.650; NsEucl=0.869; SSD=1.675; NSW=0.880; rcor=17; rNcor=8; rlogoDP=25; rNIcor=2; rNsEucl=26; rSSD=30; rNSW=28; rank_mean=19.429; match_rank=18 a 0 0 0 0 0 22 67 0 5 18 26 25 0 c 0 0 0 0 0 24 1 38 23 6 17 24 0 g 0 0 0 0 0 30 13 61 0 61 25 27 0 t 0 0 0 0 0 24 19 1 72 15 32 24 0
PBF_M01829_TRANSFAC_rc_shift3 (PBF_M01829_TRANSFAC_rc)	0.822	0.548	0.174	-0.107	0.876	1.115	0.907	9	17	36	37	20	4	14	19.571	19	; oligos_5-7nt_m1 versus PBF_M01829_TRANSFAC_rc; m=16/32; ncol2=6; w=6; offset=0; strand=R; shift=3; score=19.5714; ---wAAAGk---- ; cor=0.822; Ncor=0.548; logoDP=0.174; NIcor=-0.107; NsEucl=0.876; SSD=1.115; NSW=0.907; rcor=9; rNcor=17; rlogoDP=36; rNIcor=37; rNsEucl=20; rSSD=4; rNSW=14; rank_mean=19.571; match_rank=19 a 0 0 0 7 16 16 16 0 1 0 0 0 0 c 0 0 0 2 0 0 0 0 2 0 0 0 0 g 0 0 0 1 0 0 0 16 7 0 0 0 0 t 0 0 0 6 0 0 0 0 6 0 0 0 0
PBF_M00355_TRANSFAC_shift0 (PBF_M00355_TRANSFAC)	0.761	0.507	6.085	0.470	0.883	1.757	0.890	30	21	3	16	15	32	24	20.143	20	; oligos_5-7nt_m1 versus PBF_M00355_TRANSFAC; m=17/32; ncol2=11; w=8; offset=-3; strand=D; shift=0; score=20.1429; wwdwAAAGhgm-- ; cor=0.761; Ncor=0.507; logoDP=6.085; NIcor=0.470; NsEucl=0.883; SSD=1.757; NSW=0.890; rcor=30; rNcor=21; rlogoDP=3; rNIcor=16; rNsEucl=15; rSSD=32; rNSW=24; rank_mean=20.143; match_rank=20 a 7 7 4 9 16 16 16 0 4 3 7 0 0 c 3 2 3 1 0 0 0 0 7 3 5 0 0 g 2 1 4 0 0 0 0 16 1 9 3 0 0 t 4 6 5 6 0 0 0 0 4 1 1 0 0
RHL41_M0377_1.02_CISBP_shift5 (RHL41_M0377_1.02_CISBP)	0.789	0.614	1.916	0.634	0.867	1.724	0.877	20	9	26	3	27	31	29	20.714	21	; oligos_5-7nt_m1 versus RHL41_M0377_1.02_CISBP; m=18/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=20.7143; -----rwSTrwd- ; cor=0.789; Ncor=0.614; logoDP=1.916; NIcor=0.634; NsEucl=0.867; SSD=1.724; NSW=0.877; rcor=20; rNcor=9; rlogoDP=26; rNIcor=3; rNsEucl=27; rSSD=31; rNSW=29; rank_mean=20.714; match_rank=21 a 0 0 0 0 0 25 63 2 1 26 28 26 0 c 0 0 0 0 0 24 2 28 24 12 20 23 0 g 0 0 0 0 0 30 8 69 0 45 24 26 0 t 0 0 0 0 0 21 27 1 75 17 28 25 0
DOF5.6_M0657_1.02_CISBP_shift1 (DOF5.6_M0657_1.02_CISBP)	0.781	0.426	2.964	0.381	0.870	1.209	0.899	22	33	19	28	23	9	19	21.857	22	; oligos_5-7nt_m1 versus DOF5.6_M0657_1.02_CISBP; m=19/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=21.8571; -vawAAmGy---- ; cor=0.781; Ncor=0.426; logoDP=2.964; NIcor=0.381; NsEucl=0.870; SSD=1.209; NSW=0.899; rcor=22; rNcor=33; rlogoDP=19; rNIcor=28; rNsEucl=23; rSSD=9; rNSW=19; rank_mean=21.857; match_rank=22 a 0 25 36 43 95 93 61 5 15 0 0 0 0 c 0 26 17 8 3 4 31 3 25 0 0 0 0 g 0 26 23 11 0 0 6 88 21 0 0 0 0 t 0 23 24 38 2 3 2 4 39 0 0 0 0
PBF_MA0064.1_JASPAR_shift4 (PBF_MA0064.1_JASPAR)	0.797	0.443	5.972	0.405	0.841	1.261	0.874	16	30	4	26	37	11	31	22.143	23	; oligos_5-7nt_m1 versus PBF_MA0064.1_JASPAR; m=20/32; ncol2=5; w=5; offset=1; strand=D; shift=4; score=22.1429; ----AAAGy---- ; cor=0.797; Ncor=0.443; logoDP=5.972; NIcor=0.405; NsEucl=0.841; SSD=1.261; NSW=0.874; rcor=16; rNcor=30; rlogoDP=4; rNIcor=26; rNsEucl=37; rSSD=11; rNSW=31; rank_mean=22.143; match_rank=23 a 0 0 0 0 16 16 16 0 1 0 0 0 0 c 0 0 0 0 0 0 0 0 9 0 0 0 0 g 0 0 0 0 0 0 0 16 1 0 0 0 0 t 0 0 0 0 0 0 0 0 5 0 0 0 0
AtMYB117_II_AthaMYB_shift6 (AtMYB117_II_AthaMYB)	0.813	0.443	7.706	0.422	0.854	1.529	0.873	10	29	1	24	35	25	32	22.286	24	; oligos_5-7nt_m1 versus AtMYB117_II_AthaMYB; m=21/32; ncol2=8; w=6; offset=3; strand=D; shift=6; score=22.2857; ------AGTGGTT ; cor=0.813; Ncor=0.443; logoDP=7.706; NIcor=0.422; NsEucl=0.854; SSD=1.529; NSW=0.873; rcor=10; rNcor=29; rlogoDP=1; rNIcor=24; rNsEucl=35; rSSD=25; rNSW=32; rank_mean=22.286; match_rank=24 a 0 0 0 0 0 0 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1 0 1 1 0 0 t 0 0 0 0 0 0 0 0 1 0 0 1 1
ZAT18_ZAT18_ArabidopsisPBM_shift5 (ZAT18_ZAT18_ArabidopsisPBM)	0.775	0.452	3.025	0.421	0.876	1.512	0.892	26	26	18	25	19	22	23	22.714	25	; oligos_5-7nt_m1 versus ZAT18_ZAT18_ArabidopsisPBM; m=22/32; ncol2=10; w=7; offset=2; strand=D; shift=5; score=22.7143; -----dAGTGCAC ; cor=0.775; Ncor=0.452; logoDP=3.025; NIcor=0.421; NsEucl=0.876; SSD=1.512; NSW=0.892; rcor=26; rNcor=26; rlogoDP=18; rNIcor=25; rNsEucl=19; rSSD=22; rNSW=23; rank_mean=22.714; match_rank=25 a 0 0 0 0 0 32 71 4 3 10 4 72 4 c 0 0 0 0 0 3 4 5 18 5 81 6 88 g 0 0 0 0 0 34 8 88 7 81 6 18 5 t 0 0 0 0 0 31 17 3 72 4 9 4 3
DOF5.6_MA0983.1_JASPAR_shift1 (DOF5.6_MA0983.1_JASPAR)	0.780	0.426	2.962	0.380	0.870	1.211	0.899	24	34	20	29	24	10	20	23.000	26	; oligos_5-7nt_m1 versus DOF5.6_MA0983.1_JASPAR; m=23/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score= 23; -vawAAmGt---- ; cor=0.780; Ncor=0.426; logoDP=2.962; NIcor=0.380; NsEucl=0.870; SSD=1.211; NSW=0.899; rcor=24; rNcor=34; rlogoDP=20; rNIcor=29; rNsEucl=24; rSSD=10; rNSW=20; rank_mean=23.000; match_rank=26 a 0 254 364 432 955 928 613 50 152 0 0 0 0 c 0 257 170 84 35 40 308 28 247 0 0 0 0 g 0 262 227 108 1 1 56 884 213 0 0 0 0 t 0 228 239 376 10 32 24 38 388 0 0 0 0
Dof3_MA0021.1_JASPAR_shift4 (Dof3_MA0021.1_JASPAR)	0.777	0.518	6.206	0.462	0.852	1.585	0.868	25	20	2	17	36	28	35	23.286	27	; oligos_5-7nt_m1 versus Dof3_MA0021.1_JASPAR; m=24/32; ncol2=6; w=6; offset=1; strand=D; shift=4; score=23.2857; ----AAAGyv--- ; cor=0.777; Ncor=0.518; logoDP=6.206; NIcor=0.462; NsEucl=0.852; SSD=1.585; NSW=0.868; rcor=25; rNcor=20; rlogoDP=2; rNIcor=17; rNsEucl=36; rSSD=28; rNSW=35; rank_mean=23.286; match_rank=27 a 0 0 0 0 21 21 21 0 0 6 0 0 0 c 0 0 0 0 0 0 0 0 10 6 0 0 0 g 0 0 0 0 0 0 0 21 3 9 0 0 0 t 0 0 0 0 0 0 0 0 8 0 0 0 0
ZFP5_M0369_1.02_CISBP_shift1 (ZFP5_M0369_1.02_CISBP)	0.793	0.432	1.569	0.445	0.865	1.319	0.890	18	32	30	20	28	14	25	23.857	28	; oligos_5-7nt_m1 versus ZFP5_M0369_1.02_CISBP; m=25/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=23.8571; -wkbdAwst---- ; cor=0.793; Ncor=0.432; logoDP=1.569; NIcor=0.445; NsEucl=0.865; SSD=1.319; NSW=0.890; rcor=18; rNcor=32; rlogoDP=30; rNIcor=20; rNsEucl=28; rSSD=14; rNSW=25; rank_mean=23.857; match_rank=28 a 0 26 21 23 26 75 66 5 19 0 0 0 0 c 0 24 24 25 18 5 0 53 22 0 0 0 0 g 0 24 27 25 31 9 6 41 6 0 0 0 0 t 0 26 28 27 25 11 28 1 53 0 0 0 0
STZ_M0370_1.02_CISBP_shift5 (STZ_M0370_1.02_CISBP)	0.771	0.599	1.666	0.610	0.864	1.808	0.871	27	11	29	8	29	33	33	24.286	29	; oligos_5-7nt_m1 versus STZ_M0370_1.02_CISBP; m=26/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=24.2857; -----gAsTrwr- ; cor=0.771; Ncor=0.599; logoDP=1.666; NIcor=0.610; NsEucl=0.864; SSD=1.808; NSW=0.871; rcor=27; rNcor=11; rlogoDP=29; rNIcor=8; rNsEucl=29; rSSD=33; rNSW=33; rank_mean=24.286; match_rank=29 a 0 0 0 0 0 23 68 8 7 28 30 28 0 c 0 0 0 0 0 23 4 38 15 6 16 23 0 g 0 0 0 0 0 31 10 52 0 51 22 25 0 t 0 0 0 0 0 23 18 2 78 15 32 24 0
AT3G53600_M0374_1.02_CISBP_shift5 (AT3G53600_M0374_1.02_CISBP)	0.768	0.597	1.717	0.615	0.863	1.835	0.869	28	12	28	5	30	35	34	24.571	30	; oligos_5-7nt_m1 versus AT3G53600_M0374_1.02_CISBP; m=27/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score=24.5714; -----gwsTrwd- ; cor=0.768; Ncor=0.597; logoDP=1.717; NIcor=0.615; NsEucl=0.863; SSD=1.835; NSW=0.869; rcor=28; rNcor=12; rlogoDP=28; rNIcor=5; rNsEucl=30; rSSD=35; rNSW=34; rank_mean=24.571; match_rank=30 a 0 0 0 0 0 24 59 2 3 27 28 25 0 c 0 0 0 0 0 23 2 36 18 9 18 24 0 g 0 0 0 0 0 30 13 59 0 48 24 26 0 t 0 0 0 0 0 23 26 3 79 16 30 25 0
e_gw1.392.16.1_M0660_1.02_CISBP_shift1 (e_gw1.392.16.1_M0660_1.02_CISBP)	0.751	0.478	3.113	0.430	0.870	1.668	0.881	38	24	17	23	25	29	27	26.143	31	; oligos_5-7nt_m1 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=28/32; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=26.1429; -vrwAAaGyd--- ; cor=0.751; Ncor=0.478; logoDP=3.113; NIcor=0.430; NsEucl=0.870; SSD=1.668; NSW=0.881; rcor=38; rNcor=24; rlogoDP=17; rNIcor=23; rNsEucl=25; rSSD=29; rNSW=27; rank_mean=26.143; match_rank=31 a 0 25 33 48 86 93 67 7 14 28 0 0 0 c 0 26 19 7 6 3 15 3 28 16 0 0 0 g 0 26 26 12 2 0 5 90 20 30 0 0 0 t 0 23 22 33 6 4 13 0 38 26 0 0 0
MNB1A_MA0053.1_JASPAR_shift4 (MNB1A_MA0053.1_JASPAR)	0.759	0.422	5.940	0.389	0.827	1.505	0.850	31	35	5	27	38	20	38	27.714	34	; oligos_5-7nt_m1 versus MNB1A_MA0053.1_JASPAR; m=29/32; ncol2=5; w=5; offset=1; strand=D; shift=4; score=27.7143; ----AAAGc---- ; cor=0.759; Ncor=0.422; logoDP=5.940; NIcor=0.389; NsEucl=0.827; SSD=1.505; NSW=0.850; rcor=31; rNcor=35; rlogoDP=5; rNIcor=27; rNsEucl=38; rSSD=20; rNSW=38; rank_mean=27.714; match_rank=34 a 0 0 0 0 15 15 15 0 3 0 0 0 0 c 0 0 0 0 0 0 0 0 9 0 0 0 0 g 0 0 0 0 0 0 0 15 0 0 0 0 0 t 0 0 0 0 0 0 0 0 3 0 0 0 0
AT5G04390_M0375_1.02_CISBP_shift5 (AT5G04390_M0375_1.02_CISBP)	0.754	0.586	1.398	0.611	0.858	1.963	0.860	34	14	33	7	33	38	37	28.000	35	; oligos_5-7nt_m1 versus AT5G04390_M0375_1.02_CISBP; m=30/32; ncol2=7; w=7; offset=2; strand=D; shift=5; score= 28; -----rasYrwm- ; cor=0.754; Ncor=0.586; logoDP=1.398; NIcor=0.611; NsEucl=0.858; SSD=1.963; NSW=0.860; rcor=34; rNcor=14; rlogoDP=33; rNIcor=7; rNsEucl=33; rSSD=38; rNSW=37; rank_mean=28.000; match_rank=35 a 0 0 0 0 0 25 66 6 6 32 30 27 0 c 0 0 0 0 0 24 3 34 25 8 19 25 0 g 0 0 0 0 0 29 8 56 0 40 23 24 0 t 0 0 0 0 0 22 23 4 69 20 28 24 0
AT1G29160_M0646_1.02_CISBP_shift1 (AT1G29160_M0646_1.02_CISBP)	0.754	0.411	4.210	0.368	0.856	1.494	0.875	35	36	13	31	34	19	30	28.286	36	; oligos_5-7nt_m1 versus AT1G29160_M0646_1.02_CISBP; m=31/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=28.2857; -rwWAAmGT---- ; cor=0.754; Ncor=0.411; logoDP=4.210; NIcor=0.368; NsEucl=0.856; SSD=1.494; NSW=0.875; rcor=35; rNcor=36; rlogoDP=13; rNIcor=31; rNsEucl=34; rSSD=19; rNSW=30; rank_mean=28.286; match_rank=36 a 0 25 61 27 100 91 41 5 6 0 0 0 0 c 0 0 0 0 0 0 54 0 12 0 0 0 0 g 0 58 0 0 0 9 0 95 0 0 0 0 0 t 0 17 39 73 0 0 5 0 82 0 0 0 0
ADOF2_M0649_1.02_CISBP_shift1 (ADOF2_M0649_1.02_CISBP)	0.752	0.410	1.776	0.374	0.863	1.349	0.888	36	37	27	30	31	17	26	29.143	37	; oligos_5-7nt_m1 versus ADOF2_M0649_1.02_CISBP; m=32/32; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=29.1429; -srwAAmGy---- ; cor=0.752; Ncor=0.410; logoDP=1.776; NIcor=0.374; NsEucl=0.863; SSD=1.349; NSW=0.888; rcor=36; rNcor=37; rlogoDP=27; rNIcor=30; rNsEucl=31; rSSD=17; rNSW=26; rank_mean=29.143; match_rank=37 a 0 24 31 35 81 80 50 11 19 0 0 0 0 c 0 26 20 15 7 9 40 3 26 0 0 0 0 g 0 27 25 17 4 2 2 78 21 0 0 0 0 t 0 23 24 33 8 9 8 8 34 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m4_shift2 ; 7 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m4_shift2 (oligos_5-7nt_m4)
; oligos_5-7nt_m4; m=0 (reference); ncol1=11; shift=2; ncol=13; --bsATCCGGGws ; Alignment reference a 0 0 5 5 22 0 0 0 1 2 3 7 5 c 0 0 6 8 0 2 22 23 1 1 1 5 6 g 0 0 7 6 2 1 1 1 22 20 20 4 8 t 0 0 6 5 0 21 1 0 0 1 0 8 5

LBD16_LBD16_ArabidopsisPBM_shift4 (LBD16_LBD16_ArabidopsisPBM) 0.823 0.617 3.533 0.612 0.912 1.266 0.930 8 7 16 6 1 12 2 7.429 2
; oligos_5-7nt_m4 versus LBD16_LBD16_ArabidopsisPBM; m=1/6; ncol2=10; w=9; offset=2; strand=D; shift=4; score= 7.4286; ----wyCCGGrrw ; cor=0.823; Ncor=0.617; logoDP=3.533; NIcor=0.612; NsEucl=0.912; SSD=1.266; NSW=0.930; rcor=8; rNcor=7; rlogoDP=16; rNIcor=6; rNsEucl=1; rSSD=12; rNSW=2; rank_mean=7.429; match_rank=2 a 0 0 0 0 31 6 2 1 4 4 47 44 48 c 0 0 0 0 20 28 90 97 7 18 5 6 13 g 0 0 0 0 6 7 8 1 86 69 44 28 10 t 0 0 0 0 43 59 0 1 3 9 4 22 29

fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc_shift0 (fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc) 0.837 0.451 0.081 -0.056 0.904 0.902 0.936 2 28 38 35 4 1 1 15.571 11
; oligos_5-7nt_m4 versus fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc; m=2/6; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=15.5714; csytATCcr---- ; cor=0.837; Ncor=0.451; logoDP=0.081; NIcor=-0.056; NsEucl=0.904; SSD=0.902; NSW=0.936; rcor=2; rNcor=28; rlogoDP=38; rNIcor=35; rNsEucl=4; rSSD=1; rNSW=1; rank_mean=15.571; match_rank=11 a 17 19 17 19 93 0 3 9 29 0 0 0 0 c 42 37 31 23 3 17 93 55 21 0 0 0 0 g 20 25 9 15 4 7 3 14 31 0 0 0 0 t 21 19 43 43 0 76 1 22 19 0 0 0 0

LBD4_M1274_1.02_CISBP_shift3 (LBD4_M1274_1.02_CISBP) 0.755 0.686 1.430 0.678 0.904 1.836 0.908 33 3 31 1 3 36 12 17.000 14
; oligos_5-7nt_m4 versus LBD4_M1274_1.02_CISBP; m=3/6; ncol2=10; w=10; offset=1; strand=D; shift=3; score= 17; ---rahsCGgsrr ; cor=0.755; Ncor=0.686; logoDP=1.430; NIcor=0.678; NsEucl=0.904; SSD=1.836; NSW=0.908; rcor=33; rNcor=3; rlogoDP=31; rNIcor=1; rNsEucl=3; rSSD=36; rNSW=12; rank_mean=17.000; match_rank=14 a 0 0 0 39 48 25 20 7 6 9 21 28 30 c 0 0 0 20 11 36 37 77 14 23 30 17 19 g 0 0 0 29 24 13 37 14 78 64 36 37 29 t 0 0 0 12 17 26 6 2 2 4 13 18 22

AT5G08520_M1339_1.02_CISBP_rc_shift0 (AT5G08520_M1339_1.02_CISBP_rc) 0.755 0.407 0.088 -0.076 0.885 1.291 0.908 32 38 37 36 14 13 13 26.143 32
; oligos_5-7nt_m4 versus AT5G08520_M1339_1.02_CISBP_rc; m=4/6; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=26.1429; ccytATCyd---- ; cor=0.755; Ncor=0.407; logoDP=0.088; NIcor=-0.076; NsEucl=0.885; SSD=1.291; NSW=0.908; rcor=32; rNcor=38; rlogoDP=37; rNIcor=36; rNsEucl=14; rSSD=13; rNSW=13; rank_mean=26.143; match_rank=32 a 20 18 17 18 98 2 4 15 29 0 0 0 0 c 35 37 25 15 0 12 89 42 21 0 0 0 0 g 21 24 8 13 1 8 3 15 25 0 0 0 0 t 24 21 50 54 1 78 4 28 25 0 0 0 0

AT1G74840_M1322_1.02_CISBP_rc_shift0 (AT1G74840_M1322_1.02_CISBP_rc) 0.766 0.530 0.371 -0.185 0.894 1.834 0.898 29 19 35 38 10 34 21 26.571 33
; oligos_5-7nt_m4 versus AT1G74840_M1322_1.02_CISBP_rc; m=5/6; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=26.5714; dGwTATCCgga-- ; cor=0.766; Ncor=0.530; logoDP=0.371; NIcor=-0.185; NsEucl=0.894; SSD=1.834; NSW=0.898; rcor=29; rNcor=19; rlogoDP=35; rNIcor=38; rNsEucl=10; rSSD=34; rNSW=21; rank_mean=26.571; match_rank=33 a 26 7 58 0 100 0 0 0 19 18 31 0 0 c 16 7 2 0 0 0 100 90 9 18 23 0 0 g 33 80 2 8 0 0 0 0 63 45 23 0 0 t 25 6 38 92 0 100 0 10 9 19 23 0 0

PK23829.1_M1311_1.02_CISBP_rc_shift1 (PK23829.1_M1311_1.02_CISBP_rc) 0.751 0.438 2.598 0.157 0.862 1.867 0.867 37 31 22 34 32 37 36 32.714 38
; oligos_5-7nt_m4 versus PK23829.1_M1311_1.02_CISBP_rc; m=6/6; ncol2=8; w=7; offset=-1; strand=R; shift=1; score=32.7143; -vTTATCCr---- ; cor=0.751; Ncor=0.438; logoDP=2.598; NIcor=0.157; NsEucl=0.862; SSD=1.867; NSW=0.867; rcor=37; rNcor=31; rlogoDP=22; rNIcor=34; rNsEucl=32; rSSD=37; rNSW=36; rank_mean=32.714; match_rank=38 a 0 26 13 0 100 0 0 0 48 0 0 0 0 c 0 35 9 0 0 0 100 97 0 0 0 0 0 g 0 35 0 0 0 0 0 0 33 0 0 0 0 t 0 4 78 100 0 100 0 3 19 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m4_shift2 (oligos_5-7nt_m4)																	; oligos_5-7nt_m4; m=0 (reference); ncol1=11; shift=2; ncol=13; --bsATCCGGGws ; Alignment reference a 0 0 5 5 22 0 0 0 1 2 3 7 5 c 0 0 6 8 0 2 22 23 1 1 1 5 6 g 0 0 7 6 2 1 1 1 22 20 20 4 8 t 0 0 6 5 0 21 1 0 0 1 0 8 5
LBD16_LBD16_ArabidopsisPBM_shift4 (LBD16_LBD16_ArabidopsisPBM)	0.823	0.617	3.533	0.612	0.912	1.266	0.930	8	7	16	6	1	12	2	7.429	2	; oligos_5-7nt_m4 versus LBD16_LBD16_ArabidopsisPBM; m=1/6; ncol2=10; w=9; offset=2; strand=D; shift=4; score= 7.4286; ----wyCCGGrrw ; cor=0.823; Ncor=0.617; logoDP=3.533; NIcor=0.612; NsEucl=0.912; SSD=1.266; NSW=0.930; rcor=8; rNcor=7; rlogoDP=16; rNIcor=6; rNsEucl=1; rSSD=12; rNSW=2; rank_mean=7.429; match_rank=2 a 0 0 0 0 31 6 2 1 4 4 47 44 48 c 0 0 0 0 20 28 90 97 7 18 5 6 13 g 0 0 0 0 6 7 8 1 86 69 44 28 10 t 0 0 0 0 43 59 0 1 3 9 4 22 29
fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc_shift0 (fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc)	0.837	0.451	0.081	-0.056	0.904	0.902	0.936	2	28	38	35	4	1	1	15.571	11	; oligos_5-7nt_m4 versus fgenesh1_pg.scaffold_70000111_M1388_1.02_CISBP_rc; m=2/6; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=15.5714; csytATCcr---- ; cor=0.837; Ncor=0.451; logoDP=0.081; NIcor=-0.056; NsEucl=0.904; SSD=0.902; NSW=0.936; rcor=2; rNcor=28; rlogoDP=38; rNIcor=35; rNsEucl=4; rSSD=1; rNSW=1; rank_mean=15.571; match_rank=11 a 17 19 17 19 93 0 3 9 29 0 0 0 0 c 42 37 31 23 3 17 93 55 21 0 0 0 0 g 20 25 9 15 4 7 3 14 31 0 0 0 0 t 21 19 43 43 0 76 1 22 19 0 0 0 0
LBD4_M1274_1.02_CISBP_shift3 (LBD4_M1274_1.02_CISBP)	0.755	0.686	1.430	0.678	0.904	1.836	0.908	33	3	31	1	3	36	12	17.000	14	; oligos_5-7nt_m4 versus LBD4_M1274_1.02_CISBP; m=3/6; ncol2=10; w=10; offset=1; strand=D; shift=3; score= 17; ---rahsCGgsrr ; cor=0.755; Ncor=0.686; logoDP=1.430; NIcor=0.678; NsEucl=0.904; SSD=1.836; NSW=0.908; rcor=33; rNcor=3; rlogoDP=31; rNIcor=1; rNsEucl=3; rSSD=36; rNSW=12; rank_mean=17.000; match_rank=14 a 0 0 0 39 48 25 20 7 6 9 21 28 30 c 0 0 0 20 11 36 37 77 14 23 30 17 19 g 0 0 0 29 24 13 37 14 78 64 36 37 29 t 0 0 0 12 17 26 6 2 2 4 13 18 22
AT5G08520_M1339_1.02_CISBP_rc_shift0 (AT5G08520_M1339_1.02_CISBP_rc)	0.755	0.407	0.088	-0.076	0.885	1.291	0.908	32	38	37	36	14	13	13	26.143	32	; oligos_5-7nt_m4 versus AT5G08520_M1339_1.02_CISBP_rc; m=4/6; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=26.1429; ccytATCyd---- ; cor=0.755; Ncor=0.407; logoDP=0.088; NIcor=-0.076; NsEucl=0.885; SSD=1.291; NSW=0.908; rcor=32; rNcor=38; rlogoDP=37; rNIcor=36; rNsEucl=14; rSSD=13; rNSW=13; rank_mean=26.143; match_rank=32 a 20 18 17 18 98 2 4 15 29 0 0 0 0 c 35 37 25 15 0 12 89 42 21 0 0 0 0 g 21 24 8 13 1 8 3 15 25 0 0 0 0 t 24 21 50 54 1 78 4 28 25 0 0 0 0
AT1G74840_M1322_1.02_CISBP_rc_shift0 (AT1G74840_M1322_1.02_CISBP_rc)	0.766	0.530	0.371	-0.185	0.894	1.834	0.898	29	19	35	38	10	34	21	26.571	33	; oligos_5-7nt_m4 versus AT1G74840_M1322_1.02_CISBP_rc; m=5/6; ncol2=11; w=9; offset=-2; strand=R; shift=0; score=26.5714; dGwTATCCgga-- ; cor=0.766; Ncor=0.530; logoDP=0.371; NIcor=-0.185; NsEucl=0.894; SSD=1.834; NSW=0.898; rcor=29; rNcor=19; rlogoDP=35; rNIcor=38; rNsEucl=10; rSSD=34; rNSW=21; rank_mean=26.571; match_rank=33 a 26 7 58 0 100 0 0 0 19 18 31 0 0 c 16 7 2 0 0 0 100 90 9 18 23 0 0 g 33 80 2 8 0 0 0 0 63 45 23 0 0 t 25 6 38 92 0 100 0 10 9 19 23 0 0
PK23829.1_M1311_1.02_CISBP_rc_shift1 (PK23829.1_M1311_1.02_CISBP_rc)	0.751	0.438	2.598	0.157	0.862	1.867	0.867	37	31	22	34	32	37	36	32.714	38	; oligos_5-7nt_m4 versus PK23829.1_M1311_1.02_CISBP_rc; m=6/6; ncol2=8; w=7; offset=-1; strand=R; shift=1; score=32.7143; -vTTATCCr---- ; cor=0.751; Ncor=0.438; logoDP=2.598; NIcor=0.157; NsEucl=0.862; SSD=1.867; NSW=0.867; rcor=37; rNcor=31; rlogoDP=22; rNIcor=34; rNsEucl=32; rSSD=37; rNSW=36; rank_mean=32.714; match_rank=38 a 0 26 13 0 100 0 0 0 48 0 0 0 0 c 0 35 9 0 0 0 100 97 0 0 0 0 0 g 0 35 0 0 0 0 0 0 33 0 0 0 0 t 0 4 78 100 0 100 0 3 19 0 0 0 0