One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 14/regulon14.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o 14/regulon14.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m3_shift2 ; 9 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3)
; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=13; --smACACTbm-- ; Alignment reference a 0 0 4 6 23 0 23 0 0 5 8 0 0 c 0 0 6 8 0 23 0 23 0 6 9 0 0 g 0 0 9 4 0 0 0 0 0 6 2 0 0 t 0 0 4 5 0 0 0 0 23 6 4 0 0

ZAT7_M0373_1.02_CISBP_rc_shift0 (ZAT7_M0373_1.02_CISBP_rc) 0.923 0.639 2.264 0.160 0.939 0.608 0.966 1 5 2 5 1 1 1 2.286 1
; oligos_5-7nt_m3 versus ZAT7_M0373_1.02_CISBP_rc; m=1/8; ncol2=13; w=9; offset=-2; strand=R; shift=0; score= 2.2857; cakyaCACTvddk ; cor=0.923; Ncor=0.639; logoDP=2.264; NIcor=0.160; NsEucl=0.939; SSD=0.608; NSW=0.966; rcor=1; rNcor=5; rlogoDP=2; rNIcor=5; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.286; match_rank=1 a 23 58 18 8 65 0 80 0 2 29 27 27 19 c 32 17 8 27 14 100 0 80 2 27 17 17 19 g 23 17 48 17 15 0 0 20 2 27 29 27 32 t 22 8 26 48 6 0 20 0 94 17 27 29 30

AZF2_M0372_1.02_CISBP_rc_shift3 (AZF2_M0372_1.02_CISBP_rc) 0.862 0.671 1.276 0.130 0.889 1.206 0.914 2 2 6 6 6 4 4 4.286 2
; oligos_5-7nt_m3 versus AZF2_M0372_1.02_CISBP_rc; m=2/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 4.2857; ---ywcAsTc--- ; cor=0.862; Ncor=0.671; logoDP=1.276; NIcor=0.130; NsEucl=0.889; SSD=1.206; NSW=0.914; rcor=2; rNcor=2; rlogoDP=6; rNIcor=6; rNsEucl=6; rSSD=4; rNSW=4; rank_mean=4.286; match_rank=2 a 0 0 0 22 35 9 86 1 12 24 0 0 0 c 0 0 0 27 22 65 0 59 10 31 0 0 0 g 0 0 0 23 13 5 7 40 0 23 0 0 0 t 0 0 0 28 30 21 7 0 78 22 0 0 0

ZAT6_ZAT6_ArabidopsisPBM_shift1 (ZAT6_ZAT6_ArabidopsisPBM) 0.777 0.700 5.925 0.681 0.894 1.803 0.900 8 1 1 1 4 10 6 4.429 3
; oligos_5-7nt_m3 versus ZAT6_ZAT6_ArabidopsisPBM; m=3/8; ncol2=10; w=9; offset=-1; strand=D; shift=1; score= 4.4286; -tTAACACTAm-- ; cor=0.777; Ncor=0.700; logoDP=5.925; NIcor=0.681; NsEucl=0.894; SSD=1.803; NSW=0.900; rcor=8; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=4; rSSD=10; rNSW=6; rank_mean=4.429; match_rank=3 a 0 17 4 83 85 2 87 1 2 87 29 0 0 c 0 24 4 4 4 89 1 89 2 5 28 0 0 g 0 14 6 3 2 4 2 9 1 4 22 0 0 t 0 45 86 10 9 5 10 1 95 4 21 0 0

AZF1_M0378_1.02_CISBP_rc_shift3 (AZF1_M0378_1.02_CISBP_rc) 0.851 0.662 0.893 0.105 0.879 1.440 0.897 3 3 7 9 7 5 7 5.857 6
; oligos_5-7nt_m3 versus AZF1_M0378_1.02_CISBP_rc; m=4/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 5.8571; ---yhcAstc--- ; cor=0.851; Ncor=0.662; logoDP=0.893; NIcor=0.105; NsEucl=0.879; SSD=1.440; NSW=0.897; rcor=3; rNcor=3; rlogoDP=7; rNIcor=9; rNsEucl=7; rSSD=5; rNSW=7; rank_mean=5.857; match_rank=6 a 0 0 0 24 32 15 72 1 19 24 0 0 0 c 0 0 0 27 25 61 0 61 13 30 0 0 0 g 0 0 0 24 17 6 23 38 1 24 0 0 0 t 0 0 0 25 26 18 5 0 67 22 0 0 0

STZ_M0370_1.02_CISBP_rc_shift3 (STZ_M0370_1.02_CISBP_rc) 0.825 0.642 0.745 0.127 0.872 1.596 0.886 4 4 8 7 8 7 8 6.571 8
; oligos_5-7nt_m3 versus STZ_M0370_1.02_CISBP_rc; m=5/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 6.5714; ---ywyAsTc--- ; cor=0.825; Ncor=0.642; logoDP=0.745; NIcor=0.127; NsEucl=0.872; SSD=1.596; NSW=0.886; rcor=4; rNcor=4; rlogoDP=8; rNIcor=7; rNsEucl=8; rSSD=7; rNSW=8; rank_mean=6.571; match_rank=8 a 0 0 0 24 32 15 78 2 18 23 0 0 0 c 0 0 0 25 22 51 0 52 10 31 0 0 0 g 0 0 0 23 16 6 15 38 4 23 0 0 0 t 0 0 0 28 30 28 7 8 68 23 0 0 0

RHL41_M0377_1.02_CISBP_rc_shift3 (RHL41_M0377_1.02_CISBP_rc) 0.811 0.631 0.690 0.050 0.871 1.635 0.883 5 6 9 11 9 8 9 8.143 9
; oligos_5-7nt_m3 versus RHL41_M0377_1.02_CISBP_rc; m=6/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 8.1429; ---hwyASwy--- ; cor=0.811; Ncor=0.631; logoDP=0.690; NIcor=0.050; NsEucl=0.871; SSD=1.635; NSW=0.883; rcor=5; rNcor=6; rlogoDP=9; rNIcor=11; rNsEucl=9; rSSD=8; rNSW=9; rank_mean=8.143; match_rank=9 a 0 0 0 25 28 17 75 1 27 21 0 0 0 c 0 0 0 26 24 45 0 69 8 30 0 0 0 g 0 0 0 23 20 12 24 28 2 24 0 0 0 t 0 0 0 26 28 26 1 2 63 25 0 0 0

AT3G53600_M0374_1.02_CISBP_rc_shift3 (AT3G53600_M0374_1.02_CISBP_rc) 0.808 0.628 0.635 0.064 0.869 1.681 0.880 7 7 11 10 10 9 10 9.143 10
; oligos_5-7nt_m3 versus AT3G53600_M0374_1.02_CISBP_rc; m=7/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 9.1429; ---hwyAswc--- ; cor=0.808; Ncor=0.628; logoDP=0.635; NIcor=0.064; NsEucl=0.869; SSD=1.681; NSW=0.880; rcor=7; rNcor=7; rlogoDP=11; rNIcor=10; rNsEucl=10; rSSD=9; rNSW=10; rank_mean=9.143; match_rank=10 a 0 0 0 25 30 16 79 3 26 23 0 0 0 c 0 0 0 26 24 48 0 59 13 30 0 0 0 g 0 0 0 24 18 9 18 36 2 23 0 0 0 t 0 0 0 25 28 27 3 2 59 24 0 0 0

AT5G04390_M0375_1.02_CISBP_rc_shift3 (AT5G04390_M0375_1.02_CISBP_rc) 0.776 0.603 0.686 0.111 0.861 1.881 0.866 9 8 10 8 12 11 11 9.857 11
; oligos_5-7nt_m3 versus AT5G04390_M0375_1.02_CISBP_rc; m=8/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 9.8571; ---kwyRsty--- ; cor=0.776; Ncor=0.603; logoDP=0.686; NIcor=0.111; NsEucl=0.861; SSD=1.881; NSW=0.866; rcor=9; rNcor=8; rlogoDP=10; rNIcor=8; rNsEucl=12; rSSD=11; rNSW=11; rank_mean=9.857; match_rank=11 a 0 0 0 24 28 20 69 4 23 22 0 0 0 c 0 0 0 24 23 40 0 56 8 29 0 0 0 g 0 0 0 25 19 8 25 34 3 24 0 0 0 t 0 0 0 27 30 32 6 6 66 25 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3)																	; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=13; --smACACTbm-- ; Alignment reference a 0 0 4 6 23 0 23 0 0 5 8 0 0 c 0 0 6 8 0 23 0 23 0 6 9 0 0 g 0 0 9 4 0 0 0 0 0 6 2 0 0 t 0 0 4 5 0 0 0 0 23 6 4 0 0
ZAT7_M0373_1.02_CISBP_rc_shift0 (ZAT7_M0373_1.02_CISBP_rc)	0.923	0.639	2.264	0.160	0.939	0.608	0.966	1	5	2	5	1	1	1	2.286	1	; oligos_5-7nt_m3 versus ZAT7_M0373_1.02_CISBP_rc; m=1/8; ncol2=13; w=9; offset=-2; strand=R; shift=0; score= 2.2857; cakyaCACTvddk ; cor=0.923; Ncor=0.639; logoDP=2.264; NIcor=0.160; NsEucl=0.939; SSD=0.608; NSW=0.966; rcor=1; rNcor=5; rlogoDP=2; rNIcor=5; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.286; match_rank=1 a 23 58 18 8 65 0 80 0 2 29 27 27 19 c 32 17 8 27 14 100 0 80 2 27 17 17 19 g 23 17 48 17 15 0 0 20 2 27 29 27 32 t 22 8 26 48 6 0 20 0 94 17 27 29 30
AZF2_M0372_1.02_CISBP_rc_shift3 (AZF2_M0372_1.02_CISBP_rc)	0.862	0.671	1.276	0.130	0.889	1.206	0.914	2	2	6	6	6	4	4	4.286	2	; oligos_5-7nt_m3 versus AZF2_M0372_1.02_CISBP_rc; m=2/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 4.2857; ---ywcAsTc--- ; cor=0.862; Ncor=0.671; logoDP=1.276; NIcor=0.130; NsEucl=0.889; SSD=1.206; NSW=0.914; rcor=2; rNcor=2; rlogoDP=6; rNIcor=6; rNsEucl=6; rSSD=4; rNSW=4; rank_mean=4.286; match_rank=2 a 0 0 0 22 35 9 86 1 12 24 0 0 0 c 0 0 0 27 22 65 0 59 10 31 0 0 0 g 0 0 0 23 13 5 7 40 0 23 0 0 0 t 0 0 0 28 30 21 7 0 78 22 0 0 0
ZAT6_ZAT6_ArabidopsisPBM_shift1 (ZAT6_ZAT6_ArabidopsisPBM)	0.777	0.700	5.925	0.681	0.894	1.803	0.900	8	1	1	1	4	10	6	4.429	3	; oligos_5-7nt_m3 versus ZAT6_ZAT6_ArabidopsisPBM; m=3/8; ncol2=10; w=9; offset=-1; strand=D; shift=1; score= 4.4286; -tTAACACTAm-- ; cor=0.777; Ncor=0.700; logoDP=5.925; NIcor=0.681; NsEucl=0.894; SSD=1.803; NSW=0.900; rcor=8; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=4; rSSD=10; rNSW=6; rank_mean=4.429; match_rank=3 a 0 17 4 83 85 2 87 1 2 87 29 0 0 c 0 24 4 4 4 89 1 89 2 5 28 0 0 g 0 14 6 3 2 4 2 9 1 4 22 0 0 t 0 45 86 10 9 5 10 1 95 4 21 0 0
AZF1_M0378_1.02_CISBP_rc_shift3 (AZF1_M0378_1.02_CISBP_rc)	0.851	0.662	0.893	0.105	0.879	1.440	0.897	3	3	7	9	7	5	7	5.857	6	; oligos_5-7nt_m3 versus AZF1_M0378_1.02_CISBP_rc; m=4/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 5.8571; ---yhcAstc--- ; cor=0.851; Ncor=0.662; logoDP=0.893; NIcor=0.105; NsEucl=0.879; SSD=1.440; NSW=0.897; rcor=3; rNcor=3; rlogoDP=7; rNIcor=9; rNsEucl=7; rSSD=5; rNSW=7; rank_mean=5.857; match_rank=6 a 0 0 0 24 32 15 72 1 19 24 0 0 0 c 0 0 0 27 25 61 0 61 13 30 0 0 0 g 0 0 0 24 17 6 23 38 1 24 0 0 0 t 0 0 0 25 26 18 5 0 67 22 0 0 0
STZ_M0370_1.02_CISBP_rc_shift3 (STZ_M0370_1.02_CISBP_rc)	0.825	0.642	0.745	0.127	0.872	1.596	0.886	4	4	8	7	8	7	8	6.571	8	; oligos_5-7nt_m3 versus STZ_M0370_1.02_CISBP_rc; m=5/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 6.5714; ---ywyAsTc--- ; cor=0.825; Ncor=0.642; logoDP=0.745; NIcor=0.127; NsEucl=0.872; SSD=1.596; NSW=0.886; rcor=4; rNcor=4; rlogoDP=8; rNIcor=7; rNsEucl=8; rSSD=7; rNSW=8; rank_mean=6.571; match_rank=8 a 0 0 0 24 32 15 78 2 18 23 0 0 0 c 0 0 0 25 22 51 0 52 10 31 0 0 0 g 0 0 0 23 16 6 15 38 4 23 0 0 0 t 0 0 0 28 30 28 7 8 68 23 0 0 0
RHL41_M0377_1.02_CISBP_rc_shift3 (RHL41_M0377_1.02_CISBP_rc)	0.811	0.631	0.690	0.050	0.871	1.635	0.883	5	6	9	11	9	8	9	8.143	9	; oligos_5-7nt_m3 versus RHL41_M0377_1.02_CISBP_rc; m=6/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 8.1429; ---hwyASwy--- ; cor=0.811; Ncor=0.631; logoDP=0.690; NIcor=0.050; NsEucl=0.871; SSD=1.635; NSW=0.883; rcor=5; rNcor=6; rlogoDP=9; rNIcor=11; rNsEucl=9; rSSD=8; rNSW=9; rank_mean=8.143; match_rank=9 a 0 0 0 25 28 17 75 1 27 21 0 0 0 c 0 0 0 26 24 45 0 69 8 30 0 0 0 g 0 0 0 23 20 12 24 28 2 24 0 0 0 t 0 0 0 26 28 26 1 2 63 25 0 0 0
AT3G53600_M0374_1.02_CISBP_rc_shift3 (AT3G53600_M0374_1.02_CISBP_rc)	0.808	0.628	0.635	0.064	0.869	1.681	0.880	7	7	11	10	10	9	10	9.143	10	; oligos_5-7nt_m3 versus AT3G53600_M0374_1.02_CISBP_rc; m=7/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 9.1429; ---hwyAswc--- ; cor=0.808; Ncor=0.628; logoDP=0.635; NIcor=0.064; NsEucl=0.869; SSD=1.681; NSW=0.880; rcor=7; rNcor=7; rlogoDP=11; rNIcor=10; rNsEucl=10; rSSD=9; rNSW=10; rank_mean=9.143; match_rank=10 a 0 0 0 25 30 16 79 3 26 23 0 0 0 c 0 0 0 26 24 48 0 59 13 30 0 0 0 g 0 0 0 24 18 9 18 36 2 23 0 0 0 t 0 0 0 25 28 27 3 2 59 24 0 0 0
AT5G04390_M0375_1.02_CISBP_rc_shift3 (AT5G04390_M0375_1.02_CISBP_rc)	0.776	0.603	0.686	0.111	0.861	1.881	0.866	9	8	10	8	12	11	11	9.857	11	; oligos_5-7nt_m3 versus AT5G04390_M0375_1.02_CISBP_rc; m=8/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 9.8571; ---kwyRsty--- ; cor=0.776; Ncor=0.603; logoDP=0.686; NIcor=0.111; NsEucl=0.861; SSD=1.881; NSW=0.866; rcor=9; rNcor=8; rlogoDP=10; rNIcor=8; rNsEucl=12; rSSD=11; rNSW=11; rank_mean=9.857; match_rank=11 a 0 0 0 24 28 20 69 4 23 22 0 0 0 c 0 0 0 24 23 40 0 56 8 29 0 0 0 g 0 0 0 25 19 8 25 34 3 24 0 0 0 t 0 0 0 27 30 32 6 6 66 25 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m2_shift0 ; 5 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m2_shift0 (oligos_5-7nt_m2)
; oligos_5-7nt_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; ctgAACGAGGgs ; Alignment reference a 3 4 2 17 17 1 1 15 0 0 3 4 c 7 4 2 1 0 16 1 1 0 1 4 5 g 4 4 11 0 1 0 15 1 18 17 7 8 t 4 6 3 0 0 1 1 1 0 0 4 1

TMO6_M0654_1.02_CISBP_shift0 (TMO6_M0654_1.02_CISBP) 0.766 0.447 2.018 0.449 0.897 1.039 0.926 10 11 5 3 2 2 2 5.000 4
; oligos_5-7nt_m2 versus TMO6_M0654_1.02_CISBP; m=1/4; ncol2=7; w=7; offset=0; strand=D; shift=0; score= 5; vawAAmG----- ; cor=0.766; Ncor=0.447; logoDP=2.018; NIcor=0.449; NsEucl=0.897; SSD=1.039; NSW=0.926; rcor=10; rNcor=11; rlogoDP=5; rNIcor=3; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=4 a 25 33 40 84 85 61 7 0 0 0 0 0 c 25 21 13 6 8 33 5 0 0 0 0 0 g 26 23 15 2 0 1 77 0 0 0 0 0 t 24 23 32 8 7 5 11 0 0 0 0 0

DOF5.3_MA1071.1_JASPAR_shift0 (DOF5.3_MA1071.1_JASPAR) 0.764 0.446 2.021 0.449 0.897 1.045 0.925 11 12 4 4 3 3 3 5.714 5
; oligos_5-7nt_m2 versus DOF5.3_MA1071.1_JASPAR; m=2/4; ncol2=7; w=7; offset=0; strand=D; shift=0; score= 5.7143; gawAAmG----- ; cor=0.764; Ncor=0.446; logoDP=2.021; NIcor=0.449; NsEucl=0.897; SSD=1.045; NSW=0.925; rcor=11; rNcor=12; rlogoDP=4; rNIcor=4; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=5.714; match_rank=5 a 247 327 396 842 850 611 66 0 0 0 0 0 c 247 213 128 61 79 329 52 0 0 0 0 0 g 262 228 146 17 0 14 767 0 0 0 0 0 t 244 233 331 81 70 47 116 0 0 0 0 0

AT3G45610_M0650_1.02_CISBP_shift0 (AT3G45610_M0650_1.02_CISBP) 0.811 0.540 0.363 0.560 0.889 1.567 0.902 6 9 12 2 5 6 5 6.429 7
; oligos_5-7nt_m2 versus AT3G45610_M0650_1.02_CISBP; m=3/4; ncol2=8; w=8; offset=0; strand=D; shift=0; score= 6.4286; swwaacgw---- ; cor=0.811; Ncor=0.540; logoDP=0.363; NIcor=0.560; NsEucl=0.889; SSD=1.567; NSW=0.902; rcor=6; rNcor=9; rlogoDP=12; rNIcor=2; rNsEucl=5; rSSD=6; rNSW=5; rank_mean=6.429; match_rank=7 a 24 28 26 50 51 24 24 27 0 0 0 0 c 26 24 20 14 17 49 7 22 0 0 0 0 g 26 23 20 17 17 4 54 22 0 0 0 0 t 24 25 34 19 15 23 15 29 0 0 0 0

SMZ_MA0553.1_JASPAR_rc_shift2 (SMZ_MA0553.1_JASPAR_rc) 0.751 0.500 2.259 0.030 0.866 2.297 0.856 12 10 3 12 11 12 12 10.286 12
; oligos_5-7nt_m2 versus SMZ_MA0553.1_JASPAR_rc; m=4/4; ncol2=8; w=8; offset=2; strand=R; shift=2; score=10.2857; --GTACGAGR-- ; cor=0.751; Ncor=0.500; logoDP=2.259; NIcor=0.030; NsEucl=0.866; SSD=2.297; NSW=0.856; rcor=12; rNcor=10; rlogoDP=3; rNIcor=12; rNsEucl=11; rSSD=12; rNSW=12; rank_mean=10.286; match_rank=12 a 0 0 0 0 122 0 0 147 0 42 0 0 c 0 0 0 0 25 147 0 0 28 0 0 0 g 0 0 147 12 0 0 147 0 119 105 0 0 t 0 0 0 135 0 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m2_shift0 (oligos_5-7nt_m2)																	; oligos_5-7nt_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; ctgAACGAGGgs ; Alignment reference a 3 4 2 17 17 1 1 15 0 0 3 4 c 7 4 2 1 0 16 1 1 0 1 4 5 g 4 4 11 0 1 0 15 1 18 17 7 8 t 4 6 3 0 0 1 1 1 0 0 4 1
TMO6_M0654_1.02_CISBP_shift0 (TMO6_M0654_1.02_CISBP)	0.766	0.447	2.018	0.449	0.897	1.039	0.926	10	11	5	3	2	2	2	5.000	4	; oligos_5-7nt_m2 versus TMO6_M0654_1.02_CISBP; m=1/4; ncol2=7; w=7; offset=0; strand=D; shift=0; score= 5; vawAAmG----- ; cor=0.766; Ncor=0.447; logoDP=2.018; NIcor=0.449; NsEucl=0.897; SSD=1.039; NSW=0.926; rcor=10; rNcor=11; rlogoDP=5; rNIcor=3; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=4 a 25 33 40 84 85 61 7 0 0 0 0 0 c 25 21 13 6 8 33 5 0 0 0 0 0 g 26 23 15 2 0 1 77 0 0 0 0 0 t 24 23 32 8 7 5 11 0 0 0 0 0
DOF5.3_MA1071.1_JASPAR_shift0 (DOF5.3_MA1071.1_JASPAR)	0.764	0.446	2.021	0.449	0.897	1.045	0.925	11	12	4	4	3	3	3	5.714	5	; oligos_5-7nt_m2 versus DOF5.3_MA1071.1_JASPAR; m=2/4; ncol2=7; w=7; offset=0; strand=D; shift=0; score= 5.7143; gawAAmG----- ; cor=0.764; Ncor=0.446; logoDP=2.021; NIcor=0.449; NsEucl=0.897; SSD=1.045; NSW=0.925; rcor=11; rNcor=12; rlogoDP=4; rNIcor=4; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=5.714; match_rank=5 a 247 327 396 842 850 611 66 0 0 0 0 0 c 247 213 128 61 79 329 52 0 0 0 0 0 g 262 228 146 17 0 14 767 0 0 0 0 0 t 244 233 331 81 70 47 116 0 0 0 0 0
AT3G45610_M0650_1.02_CISBP_shift0 (AT3G45610_M0650_1.02_CISBP)	0.811	0.540	0.363	0.560	0.889	1.567	0.902	6	9	12	2	5	6	5	6.429	7	; oligos_5-7nt_m2 versus AT3G45610_M0650_1.02_CISBP; m=3/4; ncol2=8; w=8; offset=0; strand=D; shift=0; score= 6.4286; swwaacgw---- ; cor=0.811; Ncor=0.540; logoDP=0.363; NIcor=0.560; NsEucl=0.889; SSD=1.567; NSW=0.902; rcor=6; rNcor=9; rlogoDP=12; rNIcor=2; rNsEucl=5; rSSD=6; rNSW=5; rank_mean=6.429; match_rank=7 a 24 28 26 50 51 24 24 27 0 0 0 0 c 26 24 20 14 17 49 7 22 0 0 0 0 g 26 23 20 17 17 4 54 22 0 0 0 0 t 24 25 34 19 15 23 15 29 0 0 0 0
SMZ_MA0553.1_JASPAR_rc_shift2 (SMZ_MA0553.1_JASPAR_rc)	0.751	0.500	2.259	0.030	0.866	2.297	0.856	12	10	3	12	11	12	12	10.286	12	; oligos_5-7nt_m2 versus SMZ_MA0553.1_JASPAR_rc; m=4/4; ncol2=8; w=8; offset=2; strand=R; shift=2; score=10.2857; --GTACGAGR-- ; cor=0.751; Ncor=0.500; logoDP=2.259; NIcor=0.030; NsEucl=0.866; SSD=2.297; NSW=0.856; rcor=12; rNcor=10; rlogoDP=3; rNIcor=12; rNsEucl=11; rSSD=12; rNSW=12; rank_mean=10.286; match_rank=12 a 0 0 0 0 122 0 0 147 0 42 0 0 c 0 0 0 0 25 147 0 0 28 0 0 0 g 0 0 147 12 0 0 147 0 119 105 0 0 t 0 0 0 135 0 0 0 0 0 0 0 0