Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m3_shift2.png) |
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; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=13; --smACACTbm--
; Alignment reference
a 0 0 4 6 23 0 23 0 0 5 8 0 0
c 0 0 6 8 0 23 0 23 0 6 9 0 0
g 0 0 9 4 0 0 0 0 0 6 2 0 0
t 0 0 4 5 0 0 0 0 23 6 4 0 0
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ZAT7_M0373_1.02_CISBP_rc_shift0 (ZAT7_M0373_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ZAT7_M0373_1.02_CISBP_rc_shift0.png) |
0.923 |
0.639 |
2.264 |
0.160 |
0.939 |
0.608 |
0.966 |
1 |
5 |
2 |
5 |
1 |
1 |
1 |
2.286 |
1 |
; oligos_5-7nt_m3 versus ZAT7_M0373_1.02_CISBP_rc; m=1/8; ncol2=13; w=9; offset=-2; strand=R; shift=0; score= 2.2857; cakyaCACTvddk
; cor=0.923; Ncor=0.639; logoDP=2.264; NIcor=0.160; NsEucl=0.939; SSD=0.608; NSW=0.966; rcor=1; rNcor=5; rlogoDP=2; rNIcor=5; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.286; match_rank=1
a 23 58 18 8 65 0 80 0 2 29 27 27 19
c 32 17 8 27 14 100 0 80 2 27 17 17 19
g 23 17 48 17 15 0 0 20 2 27 29 27 32
t 22 8 26 48 6 0 20 0 94 17 27 29 30
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AZF2_M0372_1.02_CISBP_rc_shift3 (AZF2_M0372_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AZF2_M0372_1.02_CISBP_rc_shift3.png) |
0.862 |
0.671 |
1.276 |
0.130 |
0.889 |
1.206 |
0.914 |
2 |
2 |
6 |
6 |
6 |
4 |
4 |
4.286 |
2 |
; oligos_5-7nt_m3 versus AZF2_M0372_1.02_CISBP_rc; m=2/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 4.2857; ---ywcAsTc---
; cor=0.862; Ncor=0.671; logoDP=1.276; NIcor=0.130; NsEucl=0.889; SSD=1.206; NSW=0.914; rcor=2; rNcor=2; rlogoDP=6; rNIcor=6; rNsEucl=6; rSSD=4; rNSW=4; rank_mean=4.286; match_rank=2
a 0 0 0 22 35 9 86 1 12 24 0 0 0
c 0 0 0 27 22 65 0 59 10 31 0 0 0
g 0 0 0 23 13 5 7 40 0 23 0 0 0
t 0 0 0 28 30 21 7 0 78 22 0 0 0
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ZAT6_ZAT6_ArabidopsisPBM_shift1 (ZAT6_ZAT6_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ZAT6_ZAT6_ArabidopsisPBM_shift1.png) |
0.777 |
0.700 |
5.925 |
0.681 |
0.894 |
1.803 |
0.900 |
8 |
1 |
1 |
1 |
4 |
10 |
6 |
4.429 |
3 |
; oligos_5-7nt_m3 versus ZAT6_ZAT6_ArabidopsisPBM; m=3/8; ncol2=10; w=9; offset=-1; strand=D; shift=1; score= 4.4286; -tTAACACTAm--
; cor=0.777; Ncor=0.700; logoDP=5.925; NIcor=0.681; NsEucl=0.894; SSD=1.803; NSW=0.900; rcor=8; rNcor=1; rlogoDP=1; rNIcor=1; rNsEucl=4; rSSD=10; rNSW=6; rank_mean=4.429; match_rank=3
a 0 17 4 83 85 2 87 1 2 87 29 0 0
c 0 24 4 4 4 89 1 89 2 5 28 0 0
g 0 14 6 3 2 4 2 9 1 4 22 0 0
t 0 45 86 10 9 5 10 1 95 4 21 0 0
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AZF1_M0378_1.02_CISBP_rc_shift3 (AZF1_M0378_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AZF1_M0378_1.02_CISBP_rc_shift3.png) |
0.851 |
0.662 |
0.893 |
0.105 |
0.879 |
1.440 |
0.897 |
3 |
3 |
7 |
9 |
7 |
5 |
7 |
5.857 |
6 |
; oligos_5-7nt_m3 versus AZF1_M0378_1.02_CISBP_rc; m=4/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 5.8571; ---yhcAstc---
; cor=0.851; Ncor=0.662; logoDP=0.893; NIcor=0.105; NsEucl=0.879; SSD=1.440; NSW=0.897; rcor=3; rNcor=3; rlogoDP=7; rNIcor=9; rNsEucl=7; rSSD=5; rNSW=7; rank_mean=5.857; match_rank=6
a 0 0 0 24 32 15 72 1 19 24 0 0 0
c 0 0 0 27 25 61 0 61 13 30 0 0 0
g 0 0 0 24 17 6 23 38 1 24 0 0 0
t 0 0 0 25 26 18 5 0 67 22 0 0 0
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STZ_M0370_1.02_CISBP_rc_shift3 (STZ_M0370_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/STZ_M0370_1.02_CISBP_rc_shift3.png) |
0.825 |
0.642 |
0.745 |
0.127 |
0.872 |
1.596 |
0.886 |
4 |
4 |
8 |
7 |
8 |
7 |
8 |
6.571 |
8 |
; oligos_5-7nt_m3 versus STZ_M0370_1.02_CISBP_rc; m=5/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 6.5714; ---ywyAsTc---
; cor=0.825; Ncor=0.642; logoDP=0.745; NIcor=0.127; NsEucl=0.872; SSD=1.596; NSW=0.886; rcor=4; rNcor=4; rlogoDP=8; rNIcor=7; rNsEucl=8; rSSD=7; rNSW=8; rank_mean=6.571; match_rank=8
a 0 0 0 24 32 15 78 2 18 23 0 0 0
c 0 0 0 25 22 51 0 52 10 31 0 0 0
g 0 0 0 23 16 6 15 38 4 23 0 0 0
t 0 0 0 28 30 28 7 8 68 23 0 0 0
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RHL41_M0377_1.02_CISBP_rc_shift3 (RHL41_M0377_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RHL41_M0377_1.02_CISBP_rc_shift3.png) |
0.811 |
0.631 |
0.690 |
0.050 |
0.871 |
1.635 |
0.883 |
5 |
6 |
9 |
11 |
9 |
8 |
9 |
8.143 |
9 |
; oligos_5-7nt_m3 versus RHL41_M0377_1.02_CISBP_rc; m=6/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 8.1429; ---hwyASwy---
; cor=0.811; Ncor=0.631; logoDP=0.690; NIcor=0.050; NsEucl=0.871; SSD=1.635; NSW=0.883; rcor=5; rNcor=6; rlogoDP=9; rNIcor=11; rNsEucl=9; rSSD=8; rNSW=9; rank_mean=8.143; match_rank=9
a 0 0 0 25 28 17 75 1 27 21 0 0 0
c 0 0 0 26 24 45 0 69 8 30 0 0 0
g 0 0 0 23 20 12 24 28 2 24 0 0 0
t 0 0 0 26 28 26 1 2 63 25 0 0 0
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AT3G53600_M0374_1.02_CISBP_rc_shift3 (AT3G53600_M0374_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G53600_M0374_1.02_CISBP_rc_shift3.png) |
0.808 |
0.628 |
0.635 |
0.064 |
0.869 |
1.681 |
0.880 |
7 |
7 |
11 |
10 |
10 |
9 |
10 |
9.143 |
10 |
; oligos_5-7nt_m3 versus AT3G53600_M0374_1.02_CISBP_rc; m=7/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 9.1429; ---hwyAswc---
; cor=0.808; Ncor=0.628; logoDP=0.635; NIcor=0.064; NsEucl=0.869; SSD=1.681; NSW=0.880; rcor=7; rNcor=7; rlogoDP=11; rNIcor=10; rNsEucl=10; rSSD=9; rNSW=10; rank_mean=9.143; match_rank=10
a 0 0 0 25 30 16 79 3 26 23 0 0 0
c 0 0 0 26 24 48 0 59 13 30 0 0 0
g 0 0 0 24 18 9 18 36 2 23 0 0 0
t 0 0 0 25 28 27 3 2 59 24 0 0 0
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AT5G04390_M0375_1.02_CISBP_rc_shift3 (AT5G04390_M0375_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT5G04390_M0375_1.02_CISBP_rc_shift3.png) |
0.776 |
0.603 |
0.686 |
0.111 |
0.861 |
1.881 |
0.866 |
9 |
8 |
10 |
8 |
12 |
11 |
11 |
9.857 |
11 |
; oligos_5-7nt_m3 versus AT5G04390_M0375_1.02_CISBP_rc; m=8/8; ncol2=7; w=7; offset=1; strand=R; shift=3; score= 9.8571; ---kwyRsty---
; cor=0.776; Ncor=0.603; logoDP=0.686; NIcor=0.111; NsEucl=0.861; SSD=1.881; NSW=0.866; rcor=9; rNcor=8; rlogoDP=10; rNIcor=8; rNsEucl=12; rSSD=11; rNSW=11; rank_mean=9.857; match_rank=11
a 0 0 0 24 28 20 69 4 23 22 0 0 0
c 0 0 0 24 23 40 0 56 8 29 0 0 0
g 0 0 0 25 19 8 25 34 3 24 0 0 0
t 0 0 0 27 30 32 6 6 66 25 0 0 0
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Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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oligos_5-7nt_m2_shift0 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift0.png) |
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; oligos_5-7nt_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; ctgAACGAGGgs
; Alignment reference
a 3 4 2 17 17 1 1 15 0 0 3 4
c 7 4 2 1 0 16 1 1 0 1 4 5
g 4 4 11 0 1 0 15 1 18 17 7 8
t 4 6 3 0 0 1 1 1 0 0 4 1
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TMO6_M0654_1.02_CISBP_shift0 (TMO6_M0654_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TMO6_M0654_1.02_CISBP_shift0.png) |
0.766 |
0.447 |
2.018 |
0.449 |
0.897 |
1.039 |
0.926 |
10 |
11 |
5 |
3 |
2 |
2 |
2 |
5.000 |
4 |
; oligos_5-7nt_m2 versus TMO6_M0654_1.02_CISBP; m=1/4; ncol2=7; w=7; offset=0; strand=D; shift=0; score= 5; vawAAmG-----
; cor=0.766; Ncor=0.447; logoDP=2.018; NIcor=0.449; NsEucl=0.897; SSD=1.039; NSW=0.926; rcor=10; rNcor=11; rlogoDP=5; rNIcor=3; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=5.000; match_rank=4
a 25 33 40 84 85 61 7 0 0 0 0 0
c 25 21 13 6 8 33 5 0 0 0 0 0
g 26 23 15 2 0 1 77 0 0 0 0 0
t 24 23 32 8 7 5 11 0 0 0 0 0
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DOF5.3_MA1071.1_JASPAR_shift0 (DOF5.3_MA1071.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.3_MA1071.1_JASPAR_shift0.png) |
0.764 |
0.446 |
2.021 |
0.449 |
0.897 |
1.045 |
0.925 |
11 |
12 |
4 |
4 |
3 |
3 |
3 |
5.714 |
5 |
; oligos_5-7nt_m2 versus DOF5.3_MA1071.1_JASPAR; m=2/4; ncol2=7; w=7; offset=0; strand=D; shift=0; score= 5.7143; gawAAmG-----
; cor=0.764; Ncor=0.446; logoDP=2.021; NIcor=0.449; NsEucl=0.897; SSD=1.045; NSW=0.925; rcor=11; rNcor=12; rlogoDP=4; rNIcor=4; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=5.714; match_rank=5
a 247 327 396 842 850 611 66 0 0 0 0 0
c 247 213 128 61 79 329 52 0 0 0 0 0
g 262 228 146 17 0 14 767 0 0 0 0 0
t 244 233 331 81 70 47 116 0 0 0 0 0
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AT3G45610_M0650_1.02_CISBP_shift0 (AT3G45610_M0650_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G45610_M0650_1.02_CISBP_shift0.png) |
0.811 |
0.540 |
0.363 |
0.560 |
0.889 |
1.567 |
0.902 |
6 |
9 |
12 |
2 |
5 |
6 |
5 |
6.429 |
7 |
; oligos_5-7nt_m2 versus AT3G45610_M0650_1.02_CISBP; m=3/4; ncol2=8; w=8; offset=0; strand=D; shift=0; score= 6.4286; swwaacgw----
; cor=0.811; Ncor=0.540; logoDP=0.363; NIcor=0.560; NsEucl=0.889; SSD=1.567; NSW=0.902; rcor=6; rNcor=9; rlogoDP=12; rNIcor=2; rNsEucl=5; rSSD=6; rNSW=5; rank_mean=6.429; match_rank=7
a 24 28 26 50 51 24 24 27 0 0 0 0
c 26 24 20 14 17 49 7 22 0 0 0 0
g 26 23 20 17 17 4 54 22 0 0 0 0
t 24 25 34 19 15 23 15 29 0 0 0 0
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SMZ_MA0553.1_JASPAR_rc_shift2 (SMZ_MA0553.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SMZ_MA0553.1_JASPAR_rc_shift2.png) |
0.751 |
0.500 |
2.259 |
0.030 |
0.866 |
2.297 |
0.856 |
12 |
10 |
3 |
12 |
11 |
12 |
12 |
10.286 |
12 |
; oligos_5-7nt_m2 versus SMZ_MA0553.1_JASPAR_rc; m=4/4; ncol2=8; w=8; offset=2; strand=R; shift=2; score=10.2857; --GTACGAGR--
; cor=0.751; Ncor=0.500; logoDP=2.259; NIcor=0.030; NsEucl=0.866; SSD=2.297; NSW=0.856; rcor=12; rNcor=10; rlogoDP=3; rNIcor=12; rNsEucl=11; rSSD=12; rNSW=12; rank_mean=10.286; match_rank=12
a 0 0 0 0 122 0 0 147 0 42 0 0
c 0 0 0 0 25 147 0 0 28 0 0 0
g 0 0 147 12 0 0 147 0 119 105 0 0
t 0 0 0 135 0 0 0 0 0 0 0 0
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