Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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oligos_5-7nt_m1_shift0 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift0.png) |
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; oligos_5-7nt_m1; m=0 (reference); ncol1=12; shift=0; ncol=14; rwACGAAAGCdw--
; Alignment reference
a 18 18 40 2 1 46 50 52 1 8 13 15 0 0
c 10 10 5 44 0 2 1 0 1 38 10 11 0 0
g 17 11 5 3 50 0 1 0 49 3 14 10 0 0
t 7 13 2 3 1 4 0 0 1 3 15 16 0 0
|
Dof2_MA0020.1_JASPAR_shift5 (Dof2_MA0020.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof2_MA0020.1_JASPAR_shift5.png) |
0.990 |
0.495 |
6.238 |
0.495 |
0.969 |
0.069 |
0.994 |
1 |
5 |
2 |
4 |
1 |
1 |
1 |
2.143 |
1 |
; oligos_5-7nt_m1 versus Dof2_MA0020.1_JASPAR; m=1/7; ncol2=6; w=6; offset=5; strand=D; shift=5; score= 2.1429; -----AAAGcm---
; cor=0.990; Ncor=0.495; logoDP=6.238; NIcor=0.495; NsEucl=0.969; SSD=0.069; NSW=0.994; rcor=1; rNcor=5; rlogoDP=2; rNIcor=4; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=2.143; match_rank=1
a 0 0 0 0 0 21 21 21 0 3 7 0 0 0
c 0 0 0 0 0 0 0 0 0 14 6 0 0 0
g 0 0 0 0 0 0 0 0 21 2 3 0 0 0
t 0 0 0 0 0 0 0 0 0 2 5 0 0 0
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MNB1A_MA0053.1_JASPAR_shift5 (MNB1A_MA0053.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/MNB1A_MA0053.1_JASPAR_shift5.png) |
0.989 |
0.412 |
6.241 |
0.411 |
0.963 |
0.070 |
0.993 |
2 |
12 |
1 |
7 |
2 |
2 |
2 |
4.000 |
2 |
; oligos_5-7nt_m1 versus MNB1A_MA0053.1_JASPAR; m=2/7; ncol2=5; w=5; offset=5; strand=D; shift=5; score= 4; -----AAAGc----
; cor=0.989; Ncor=0.412; logoDP=6.241; NIcor=0.411; NsEucl=0.963; SSD=0.070; NSW=0.993; rcor=2; rNcor=12; rlogoDP=1; rNIcor=7; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=4.000; match_rank=2
a 0 0 0 0 0 15 15 15 0 3 0 0 0 0
c 0 0 0 0 0 0 0 0 0 9 0 0 0 0
g 0 0 0 0 0 0 0 0 15 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 3 0 0 0 0
|
Dof3_MA0021.1_JASPAR_shift5 (Dof3_MA0021.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof3_MA0021.1_JASPAR_shift5.png) |
0.945 |
0.473 |
6.208 |
0.483 |
0.931 |
0.346 |
0.971 |
4 |
6 |
5 |
5 |
4 |
4 |
4 |
4.571 |
3 |
; oligos_5-7nt_m1 versus Dof3_MA0021.1_JASPAR; m=3/7; ncol2=6; w=6; offset=5; strand=D; shift=5; score= 4.5714; -----AAAGyv---
; cor=0.945; Ncor=0.473; logoDP=6.208; NIcor=0.483; NsEucl=0.931; SSD=0.346; NSW=0.971; rcor=4; rNcor=6; rlogoDP=5; rNIcor=5; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=4.571; match_rank=3
a 0 0 0 0 0 21 21 21 0 0 6 0 0 0
c 0 0 0 0 0 0 0 0 0 10 6 0 0 0
g 0 0 0 0 0 0 0 0 21 3 9 0 0 0
t 0 0 0 0 0 0 0 0 0 8 0 0 0 0
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PBF_MA0064.1_JASPAR_shift5 (PBF_MA0064.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_MA0064.1_JASPAR_shift5.png) |
0.980 |
0.408 |
6.213 |
0.409 |
0.949 |
0.129 |
0.987 |
3 |
14 |
4 |
8 |
3 |
3 |
3 |
5.429 |
5 |
; oligos_5-7nt_m1 versus PBF_MA0064.1_JASPAR; m=4/7; ncol2=5; w=5; offset=5; strand=D; shift=5; score= 5.4286; -----AAAGy----
; cor=0.980; Ncor=0.408; logoDP=6.213; NIcor=0.409; NsEucl=0.949; SSD=0.129; NSW=0.987; rcor=3; rNcor=14; rlogoDP=4; rNIcor=8; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=5.429; match_rank=5
a 0 0 0 0 0 16 16 16 0 1 0 0 0 0
c 0 0 0 0 0 0 0 0 0 9 0 0 0 0
g 0 0 0 0 0 0 0 0 16 1 0 0 0 0
t 0 0 0 0 0 0 0 0 0 5 0 0 0 0
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Dof3_M00354_TRANSFAC_shift1 (Dof3_M00354_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof3_M00354_TRANSFAC_shift1.png) |
0.779 |
0.714 |
6.222 |
0.710 |
0.914 |
1.791 |
0.919 |
12 |
2 |
3 |
2 |
6 |
13 |
8 |
6.571 |
7 |
; oligos_5-7nt_m1 versus Dof3_M00354_TRANSFAC; m=5/7; ncol2=11; w=11; offset=1; strand=D; shift=1; score= 6.5714; -gmswAAAGcvm--
; cor=0.779; Ncor=0.714; logoDP=6.222; NIcor=0.710; NsEucl=0.914; SSD=1.791; NSW=0.919; rcor=12; rNcor=2; rlogoDP=3; rNIcor=2; rNsEucl=6; rSSD=13; rNSW=8; rank_mean=6.571; match_rank=7
a 0 5 10 5 8 21 21 21 0 3 6 8 0 0
c 0 3 6 6 3 0 0 0 0 10 6 6 0 0
g 0 10 3 6 3 0 0 0 21 3 7 4 0 0
t 0 3 2 4 7 0 0 0 0 5 2 3 0 0
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CBNAC_M01188_TRANSFAC_rc_shift6 (CBNAC_M01188_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CBNAC_M01188_TRANSFAC_rc_shift6.png) |
0.939 |
0.469 |
2.087 |
0.153 |
0.924 |
0.421 |
0.965 |
5 |
7 |
10 |
10 |
5 |
5 |
5 |
6.714 |
8 |
; oligos_5-7nt_m1 versus CBNAC_M01188_TRANSFAC_rc; m=6/7; ncol2=6; w=6; offset=6; strand=R; shift=6; score= 6.7143; ------AAGCaa--
; cor=0.939; Ncor=0.469; logoDP=2.087; NIcor=0.153; NsEucl=0.924; SSD=0.421; NSW=0.965; rcor=5; rNcor=7; rlogoDP=10; rNIcor=10; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=6.714; match_rank=8
a 0 0 0 0 0 0 44 44 0 0 22 23 0 0
c 0 0 0 0 0 0 0 0 0 44 5 9 0 0
g 0 0 0 0 0 0 0 0 44 0 4 5 0 0
t 0 0 0 0 0 0 0 0 0 0 9 1 0 0
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SED_M01128_TRANSFAC_rc_shift4 (SED_M01128_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SED_M01128_TRANSFAC_rc_shift4.png) |
0.807 |
0.461 |
0.884 |
0.037 |
0.898 |
1.339 |
0.916 |
7 |
10 |
11 |
11 |
9 |
9 |
9 |
9.429 |
9 |
; oligos_5-7nt_m1 versus SED_M01128_TRANSFAC_rc; m=7/7; ncol2=10; w=8; offset=4; strand=R; shift=4; score= 9.4286; ----dAAAGbddrb
; cor=0.807; Ncor=0.461; logoDP=0.884; NIcor=0.037; NsEucl=0.898; SSD=1.339; NSW=0.916; rcor=7; rNcor=10; rlogoDP=11; rNIcor=11; rNsEucl=9; rSSD=9; rNSW=9; rank_mean=9.429; match_rank=9
a 0 0 0 0 4 8 8 8 0 0 2 2 5 0
c 0 0 0 0 0 0 0 0 0 2 1 1 0 3
g 0 0 0 0 2 0 0 0 8 4 3 2 3 2
t 0 0 0 0 2 0 0 0 0 2 2 3 0 3
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Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
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oligos_5-7nt_m2_shift1 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift1.png) |
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; oligos_5-7nt_m2; m=0 (reference); ncol1=11; shift=1; ncol=12; -ywAGCTAGGhd
; Alignment reference
a 0 39 46 161 5 5 9 152 7 12 50 52
c 0 53 36 2 2 164 8 9 3 27 46 29
g 0 36 33 11 168 6 9 6 162 130 35 46
t 0 50 63 4 3 3 152 11 6 9 47 51
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STY1_STY1_2_ArabidopsisPBM_rc_shift0 (STY1_STY1_2_ArabidopsisPBM_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/STY1_STY1_2_ArabidopsisPBM_rc_shift0.png) |
0.854 |
0.640 |
5.111 |
0.614 |
0.910 |
1.309 |
0.927 |
6 |
3 |
6 |
3 |
7 |
7 |
6 |
5.429 |
4 |
; oligos_5-7nt_m2 versus STY1_STY1_2_ArabidopsisPBM_rc; m=1/5; ncol2=10; w=9; offset=-1; strand=R; shift=0; score= 5.4286; rCTAGCTAGt--
; cor=0.854; Ncor=0.640; logoDP=5.111; NIcor=0.614; NsEucl=0.910; SSD=1.309; NSW=0.927; rcor=6; rNcor=3; rlogoDP=6; rNIcor=3; rNsEucl=7; rSSD=7; rNSW=6; rank_mean=5.429; match_rank=4
a 31 3 5 92 2 2 6 92 3 16 0 0
c 8 89 1 0 1 95 3 2 5 20 0 0
g 50 5 2 3 95 1 0 1 89 23 0 0
t 11 3 92 5 2 2 91 5 3 41 0 0
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ATTRB2_M1346_1.02_CISBP_rc_shift5 (ATTRB2_M1346_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATTRB2_M1346_1.02_CISBP_rc_shift5.png) |
0.799 |
0.466 |
0.423 |
-0.128 |
0.885 |
1.303 |
0.907 |
9 |
8 |
13 |
12 |
10 |
6 |
10 |
9.714 |
10 |
; oligos_5-7nt_m2 versus ATTRB2_M1346_1.02_CISBP_rc; m=2/5; ncol2=8; w=7; offset=4; strand=R; shift=5; score= 9.7143; -----yTAGGky
; cor=0.799; Ncor=0.466; logoDP=0.423; NIcor=-0.128; NsEucl=0.885; SSD=1.303; NSW=0.907; rcor=9; rNcor=8; rlogoDP=13; rNIcor=12; rNsEucl=10; rSSD=6; rNSW=10; rank_mean=9.714; match_rank=10
a 0 0 0 0 0 8 1 99 0 0 0 4
c 0 0 0 0 0 40 1 0 0 0 0 61
g 0 0 0 0 0 7 0 1 100 100 63 0
t 0 0 0 0 0 45 98 0 0 0 37 35
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TRB2_MA1073.1_JASPAR_rc_shift5 (TRB2_MA1073.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRB2_MA1073.1_JASPAR_rc_shift5.png) |
0.799 |
0.466 |
0.424 |
-0.128 |
0.884 |
1.309 |
0.906 |
10 |
9 |
12 |
13 |
11 |
8 |
11 |
10.571 |
11 |
; oligos_5-7nt_m2 versus TRB2_MA1073.1_JASPAR_rc; m=3/5; ncol2=8; w=7; offset=4; strand=R; shift=5; score=10.5714; -----yTAGGky
; cor=0.799; Ncor=0.466; logoDP=0.424; NIcor=-0.128; NsEucl=0.884; SSD=1.309; NSW=0.906; rcor=10; rNcor=9; rlogoDP=12; rNIcor=13; rNsEucl=11; rSSD=8; rNSW=11; rank_mean=10.571; match_rank=11
a 0 0 0 0 0 74 13 994 0 0 0 40
c 0 0 0 0 0 398 7 0 0 0 0 611
g 0 0 0 0 0 74 0 6 1000 1000 628 0
t 0 0 0 0 0 454 980 0 0 0 372 349
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PK06103.1_M1304_1.02_CISBP_shift5 (PK06103.1_M1304_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK06103.1_M1304_1.02_CISBP_shift5.png) |
0.771 |
0.450 |
4.399 |
0.439 |
0.857 |
2.017 |
0.856 |
13 |
11 |
7 |
6 |
13 |
14 |
14 |
11.143 |
12 |
; oligos_5-7nt_m2 versus PK06103.1_M1304_1.02_CISBP; m=4/5; ncol2=8; w=7; offset=4; strand=D; shift=5; score=11.1429; -----CTAGGGC
; cor=0.771; Ncor=0.450; logoDP=4.399; NIcor=0.439; NsEucl=0.857; SSD=2.017; NSW=0.856; rcor=13; rNcor=11; rlogoDP=7; rNIcor=6; rNsEucl=13; rSSD=14; rNSW=14; rank_mean=11.143; match_rank=12
a 0 0 0 0 0 0 0 100 0 0 0 0
c 0 0 0 0 0 80 0 0 0 0 0 100
g 0 0 0 0 0 0 0 0 100 100 100 0
t 0 0 0 0 0 20 100 0 0 0 0 0
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CBNAC_M01188_TRANSFAC_rc_shift2 (CBNAC_M01188_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CBNAC_M01188_TRANSFAC_rc_shift2.png) |
0.752 |
0.410 |
3.851 |
0.315 |
0.854 |
1.538 |
0.872 |
14 |
13 |
8 |
9 |
14 |
11 |
13 |
11.714 |
14 |
; oligos_5-7nt_m2 versus CBNAC_M01188_TRANSFAC_rc; m=5/5; ncol2=6; w=6; offset=1; strand=R; shift=2; score=11.7143; --AAGCaa----
; cor=0.752; Ncor=0.410; logoDP=3.851; NIcor=0.315; NsEucl=0.854; SSD=1.538; NSW=0.872; rcor=14; rNcor=13; rlogoDP=8; rNIcor=9; rNsEucl=14; rSSD=11; rNSW=13; rank_mean=11.714; match_rank=14
a 0 0 44 44 0 0 22 23 0 0 0 0
c 0 0 0 0 0 44 5 9 0 0 0 0
g 0 0 0 0 44 0 4 5 0 0 0 0
t 0 0 0 0 0 0 9 1 0 0 0 0
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