Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m2_shift3 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift3.png) |
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; oligos_5-7nt_m2; m=0 (reference); ncol1=9; shift=3; ncol=12; ---hsATTCGdt
; Alignment reference
a 0 0 0 26 23 100 0 0 0 0 28 23
c 0 0 0 27 29 0 0 0 100 0 21 23
g 0 0 0 16 27 0 0 0 0 100 26 23
t 0 0 0 31 21 0 100 100 0 0 25 31
|
AT3G04030_M1325_1.02_CISBP_shift3 (AT3G04030_M1325_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G04030_M1325_1.02_CISBP_shift3.png) |
0.804 |
0.804 |
3.925 |
0.784 |
0.908 |
1.358 |
0.925 |
10 |
1 |
9 |
1 |
4 |
10 |
8 |
6.143 |
2 |
; oligos_5-7nt_m2 versus AT3G04030_M1325_1.02_CISBP; m=1/14; ncol2=9; w=9; offset=0; strand=D; shift=3; score= 6.1429; ---wkATtCbsy
; cor=0.804; Ncor=0.804; logoDP=3.925; NIcor=0.784; NsEucl=0.908; SSD=1.358; NSW=0.925; rcor=10; rNcor=1; rlogoDP=9; rNIcor=1; rNsEucl=4; rSSD=10; rNSW=8; rank_mean=6.143; match_rank=2
a 0 0 0 38 10 79 0 17 3 8 21 22
c 0 0 0 19 8 2 0 12 88 36 31 27
g 0 0 0 18 55 15 0 22 4 28 25 23
t 0 0 0 25 27 4 100 49 5 28 23 28
|
AT3G24120_M1328_1.02_CISBP_shift2 (AT3G24120_M1328_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G24120_M1328_1.02_CISBP_shift2.png) |
0.814 |
0.733 |
3.524 |
0.714 |
0.909 |
1.334 |
0.926 |
9 |
2 |
12 |
2 |
3 |
9 |
7 |
6.286 |
3 |
; oligos_5-7nt_m2 versus AT3G24120_M1328_1.02_CISBP; m=2/14; ncol2=10; w=9; offset=-1; strand=D; shift=2; score= 6.2857; --wwkATtCbby
; cor=0.814; Ncor=0.733; logoDP=3.524; NIcor=0.714; NsEucl=0.909; SSD=1.334; NSW=0.926; rcor=9; rNcor=2; rlogoDP=12; rNIcor=2; rNsEucl=3; rSSD=9; rNSW=7; rank_mean=6.286; match_rank=3
a 0 0 28 37 10 78 0 18 7 10 22 24
c 0 0 21 18 10 1 0 12 79 34 28 27
g 0 0 20 17 46 16 0 20 6 28 25 22
t 0 0 31 28 34 5 100 50 8 28 25 27
|
KAN1_MA1027.1_JASPAR_shift1 (KAN1_MA1027.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/KAN1_MA1027.1_JASPAR_shift1.png) |
0.878 |
0.479 |
3.573 |
0.479 |
0.902 |
0.691 |
0.942 |
6 |
16 |
11 |
12 |
7 |
2 |
4 |
8.286 |
4 |
; oligos_5-7nt_m2 versus KAN1_MA1027.1_JASPAR; m=3/14; ncol2=8; w=6; offset=-2; strand=D; shift=1; score= 8.2857; -arwtATtC---
; cor=0.878; Ncor=0.479; logoDP=3.573; NIcor=0.479; NsEucl=0.902; SSD=0.691; NSW=0.942; rcor=6; rNcor=16; rlogoDP=11; rNIcor=12; rNsEucl=7; rSSD=2; rNSW=4; rank_mean=8.286; match_rank=4
a 0 433 259 618 128 898 54 36 63 0 0 0
c 0 129 213 16 192 14 87 147 876 0 0 0
g 0 237 285 43 58 68 19 169 18 0 0 0
t 0 200 242 323 623 20 840 648 44 0 0 0
|
LOC_Os02g22020_M1363_1.02_CISBP_shift2 (LOC_Os02g22020_M1363_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LOC_Os02g22020_M1363_1.02_CISBP_shift2.png) |
0.757 |
0.681 |
3.368 |
0.672 |
0.900 |
1.614 |
0.910 |
17 |
5 |
13 |
3 |
9 |
14 |
12 |
10.429 |
7 |
; oligos_5-7nt_m2 versus LOC_Os02g22020_M1363_1.02_CISBP; m=4/14; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=10.4286; --wagATtCysy
; cor=0.757; Ncor=0.681; logoDP=3.368; NIcor=0.672; NsEucl=0.900; SSD=1.614; NSW=0.910; rcor=17; rNcor=5; rlogoDP=13; rNIcor=3; rNsEucl=9; rSSD=14; rNSW=12; rank_mean=10.429; match_rank=7
a 0 0 26 46 5 86 7 20 3 15 22 22
c 0 0 23 13 6 2 3 21 89 38 29 29
g 0 0 24 19 66 7 2 11 2 21 27 23
t 0 0 27 22 23 5 88 48 6 26 22 26
|
KAN1_KAN1_ArabidopsisPBM_shift0 (KAN1_KAN1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/KAN1_KAN1_ArabidopsisPBM_shift0.png) |
0.846 |
0.493 |
3.756 |
0.485 |
0.895 |
1.087 |
0.922 |
7 |
14 |
10 |
11 |
17 |
7 |
10 |
10.857 |
8 |
; oligos_5-7nt_m2 versus KAN1_KAN1_ArabidopsisPBM; m=5/14; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=10.8571; barwtATtCk--
; cor=0.846; Ncor=0.493; logoDP=3.756; NIcor=0.485; NsEucl=0.895; SSD=1.087; NSW=0.922; rcor=7; rNcor=14; rlogoDP=10; rNIcor=11; rNsEucl=17; rSSD=7; rNSW=10; rank_mean=10.857; match_rank=8
a 15 43 26 62 13 90 5 3 6 5 0 0
c 27 13 21 2 19 1 9 15 88 20 0 0
g 33 24 29 4 6 7 2 17 2 47 0 0
t 25 20 24 32 62 2 84 65 4 28 0 0
|
AT1G25550_M1320_1.02_CISBP_shift2 (AT1G25550_M1320_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT1G25550_M1320_1.02_CISBP_shift2.png) |
0.756 |
0.681 |
5.282 |
0.669 |
0.899 |
1.665 |
0.908 |
18 |
6 |
4 |
4 |
13 |
19 |
16 |
11.429 |
10 |
; oligos_5-7nt_m2 versus AT1G25550_M1320_1.02_CISBP; m=6/14; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=11.4286; --waGATtCysy
; cor=0.756; Ncor=0.681; logoDP=5.282; NIcor=0.669; NsEucl=0.899; SSD=1.665; NSW=0.908; rcor=18; rNcor=6; rlogoDP=4; rNIcor=4; rNsEucl=13; rSSD=19; rNSW=16; rank_mean=11.429; match_rank=10
a 0 0 30 64 3 95 3 18 0 12 24 21
c 0 0 20 7 2 1 0 14 98 40 28 28
g 0 0 24 14 75 4 0 6 0 20 26 20
t 0 0 26 15 20 0 97 62 2 28 22 31
|
AtPHR1_M1334_1.02_CISBP_shift2 (AtPHR1_M1334_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtPHR1_M1334_1.02_CISBP_shift2.png) |
0.754 |
0.679 |
4.575 |
0.666 |
0.900 |
1.630 |
0.909 |
21 |
8 |
6 |
6 |
10 |
16 |
13 |
11.429 |
11 |
; oligos_5-7nt_m2 versus AtPHR1_M1334_1.02_CISBP; m=7/14; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=11.4286; --wakATkCbsy
; cor=0.754; Ncor=0.679; logoDP=4.575; NIcor=0.666; NsEucl=0.900; SSD=1.630; NSW=0.909; rcor=21; rNcor=8; rlogoDP=6; rNIcor=6; rNsEucl=10; rSSD=16; rNSW=13; rank_mean=11.429; match_rank=11
a 0 0 33 53 8 83 3 18 0 5 23 22
c 0 0 18 10 3 1 0 20 99 38 28 27
g 0 0 23 13 53 15 0 26 0 29 25 21
t 0 0 26 24 36 1 97 36 1 28 24 30
|
ATMYR1_M1341_1.02_CISBP_rc_shift3 (ATMYR1_M1341_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATMYR1_M1341_1.02_CISBP_rc_shift3.png) |
0.804 |
0.724 |
0.118 |
-0.162 |
0.908 |
1.361 |
0.924 |
11 |
3 |
21 |
21 |
5 |
11 |
9 |
11.571 |
12 |
; oligos_5-7nt_m2 versus ATMYR1_M1341_1.02_CISBP_rc; m=8/14; ncol2=10; w=9; offset=0; strand=R; shift=3; score=11.5714; ---akATtCsss
; cor=0.804; Ncor=0.724; logoDP=0.118; NIcor=-0.162; NsEucl=0.908; SSD=1.361; NSW=0.924; rcor=11; rNcor=3; rlogoDP=21; rNIcor=21; rNsEucl=5; rSSD=11; rNSW=9; rank_mean=11.571; match_rank=12
a 0 0 0 40 8 79 8 15 0 4 18 21
c 0 0 0 16 8 5 4 14 95 41 35 31
g 0 0 0 21 57 14 0 21 2 32 27 25
t 0 0 0 23 27 2 88 50 3 23 20 23
|
LOC_Os03g21240_M1364_1.02_CISBP_shift2 (LOC_Os03g21240_M1364_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LOC_Os03g21240_M1364_1.02_CISBP_shift2.png) |
0.753 |
0.678 |
4.600 |
0.667 |
0.899 |
1.637 |
0.909 |
22 |
9 |
5 |
5 |
11 |
17 |
14 |
11.857 |
13 |
; oligos_5-7nt_m2 versus LOC_Os03g21240_M1364_1.02_CISBP; m=9/14; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=11.8571; --wakATkCbyy
; cor=0.753; Ncor=0.678; logoDP=4.600; NIcor=0.667; NsEucl=0.899; SSD=1.637; NSW=0.909; rcor=22; rNcor=9; rlogoDP=5; rNIcor=5; rNsEucl=11; rSSD=17; rNSW=14; rank_mean=11.857; match_rank=13
a 0 0 37 56 9 87 4 19 0 5 24 23
c 0 0 16 9 3 0 0 17 98 39 26 26
g 0 0 21 11 53 11 0 25 0 26 24 19
t 0 0 26 24 35 2 96 39 2 30 26 32
|
PK14402.1_M1308_1.02_CISBP_shift1 (PK14402.1_M1308_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK14402.1_M1308_1.02_CISBP_shift1.png) |
0.769 |
0.629 |
7.297 |
0.618 |
0.896 |
1.762 |
0.902 |
15 |
10 |
2 |
8 |
16 |
20 |
17 |
12.571 |
15 |
; oligos_5-7nt_m2 versus PK14402.1_M1308_1.02_CISBP; m=10/14; ncol2=11; w=9; offset=-2; strand=D; shift=1; score=12.5714; -rtaGATTCsgy
; cor=0.769; Ncor=0.629; logoDP=7.297; NIcor=0.618; NsEucl=0.896; SSD=1.762; NSW=0.902; rcor=15; rNcor=10; rlogoDP=2; rNIcor=8; rNsEucl=16; rSSD=20; rNSW=17; rank_mean=12.571; match_rank=15
a 0 30 24 58 0 100 0 0 0 5 13 20
c 0 19 12 4 0 0 0 9 100 65 22 30
g 0 31 22 14 89 0 0 0 0 25 44 20
t 0 20 42 24 11 0 100 91 0 5 21 30
|
KAN4_MA1028.1_JASPAR_shift1 (KAN4_MA1028.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/KAN4_MA1028.1_JASPAR_shift1.png) |
0.817 |
0.445 |
5.628 |
0.427 |
0.869 |
1.230 |
0.897 |
8 |
19 |
3 |
13 |
22 |
8 |
19 |
13.143 |
16 |
; oligos_5-7nt_m2 versus KAN4_MA1028.1_JASPAR; m=11/14; ncol2=8; w=6; offset=-2; strand=D; shift=1; score=13.1429; -GAATATTC---
; cor=0.817; Ncor=0.445; logoDP=5.628; NIcor=0.427; NsEucl=0.869; SSD=1.230; NSW=0.897; rcor=8; rNcor=19; rlogoDP=3; rNIcor=13; rNsEucl=22; rSSD=8; rNSW=19; rank_mean=13.143; match_rank=16
a 0 11 941 905 2 893 92 21 14 0 0 0
c 0 10 12 2 102 3 2 26 965 0 0 0
g 0 965 26 2 3 102 2 12 10 0 0 0
t 0 14 21 92 893 2 905 941 11 0 0 0
|
PK19779.1_M1310_1.02_CISBP_shift2 (PK19779.1_M1310_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK19779.1_M1310_1.02_CISBP_shift2.png) |
0.756 |
0.681 |
3.020 |
0.656 |
0.899 |
1.663 |
0.908 |
19 |
7 |
15 |
7 |
12 |
18 |
15 |
13.286 |
17 |
; oligos_5-7nt_m2 versus PK19779.1_M1310_1.02_CISBP; m=12/14; ncol2=10; w=9; offset=-1; strand=D; shift=2; score=13.2857; --wwkATwCyvy
; cor=0.756; Ncor=0.681; logoDP=3.020; NIcor=0.656; NsEucl=0.899; SSD=1.663; NSW=0.908; rcor=19; rNcor=7; rlogoDP=15; rNIcor=7; rNsEucl=12; rSSD=18; rNSW=15; rank_mean=13.286; match_rank=17
a 0 0 26 37 11 72 0 25 11 20 25 24
c 0 0 24 18 9 4 0 21 74 30 27 28
g 0 0 24 20 54 14 0 15 7 23 26 22
t 0 0 26 25 26 10 100 39 8 27 22 26
|
AT1G68670_M1321_1.02_CISBP_rc_shift2 (AT1G68670_M1321_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT1G68670_M1321_1.02_CISBP_rc_shift2.png) |
0.768 |
0.691 |
0.251 |
-0.175 |
0.902 |
1.565 |
0.913 |
16 |
4 |
20 |
22 |
8 |
12 |
11 |
13.286 |
18 |
; oligos_5-7nt_m2 versus AT1G68670_M1321_1.02_CISBP_rc; m=13/14; ncol2=10; w=9; offset=-1; strand=R; shift=2; score=13.2857; --wagATtCymy
; cor=0.768; Ncor=0.691; logoDP=0.251; NIcor=-0.175; NsEucl=0.902; SSD=1.565; NSW=0.913; rcor=16; rNcor=4; rlogoDP=20; rNIcor=22; rNsEucl=8; rSSD=12; rNSW=11; rank_mean=13.286; match_rank=18
a 0 0 31 49 9 86 2 24 9 16 26 23
c 0 0 21 12 9 0 3 15 76 31 26 27
g 0 0 22 17 59 6 0 12 8 21 24 21
t 0 0 26 22 23 8 95 49 7 32 24 29
|
AT3G13040_M1326_1.02_CISBP_shift1 (AT3G13040_M1326_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G13040_M1326_1.02_CISBP_shift1.png) |
0.754 |
0.549 |
4.500 |
0.536 |
0.887 |
1.627 |
0.898 |
20 |
11 |
7 |
9 |
18 |
15 |
18 |
14.000 |
19 |
; oligos_5-7nt_m2 versus AT3G13040_M1326_1.02_CISBP; m=14/14; ncol2=10; w=8; offset=-2; strand=D; shift=1; score= 14; -dwakATtCbc-
; cor=0.754; Ncor=0.549; logoDP=4.500; NIcor=0.536; NsEucl=0.887; SSD=1.627; NSW=0.898; rcor=20; rNcor=11; rlogoDP=7; rNIcor=9; rNsEucl=18; rSSD=15; rNSW=18; rank_mean=14.000; match_rank=19
a 0 26 34 53 7 90 1 18 1 7 24 0
c 0 22 18 11 3 0 0 19 92 38 29 0
g 0 27 20 13 58 9 0 23 3 25 24 0
t 0 25 28 23 32 1 99 40 4 30 23 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m4_shift3 (oligos_5-7nt_m4) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m4_shift3.png) |
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; oligos_5-7nt_m4; m=0 (reference); ncol1=9; shift=3; ncol=12; ---mdGCACAwk
; Alignment reference
a 0 0 0 54 44 0 0 159 0 159 46 36
c 0 0 0 44 31 0 159 0 159 0 38 39
g 0 0 0 25 43 159 0 0 0 0 22 42
t 0 0 0 36 41 0 0 0 0 0 53 42
|
CONS_ARATH_CONS2_EEADannot_rc_shift0 (CONS_ARATH_CONS2_EEADannot_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CONS_ARATH_CONS2_EEADannot_rc_shift0.png) |
0.892 |
0.520 |
1.930 |
0.036 |
0.911 |
0.772 |
0.945 |
3 |
12 |
18 |
18 |
2 |
6 |
3 |
8.857 |
5 |
; oligos_5-7nt_m4 versus CONS_ARATH_CONS2_EEADannot_rc; m=1/3; ncol2=10; w=7; offset=-3; strand=R; shift=0; score= 8.8571; CATnnnCACA--
; cor=0.892; Ncor=0.520; logoDP=1.930; NIcor=0.036; NsEucl=0.911; SSD=0.772; NSW=0.945; rcor=3; rNcor=12; rlogoDP=18; rNIcor=18; rNsEucl=2; rSSD=6; rNSW=3; rank_mean=8.857; match_rank=5
a 0.00 1.00 0.00 25 25 25 0.00 1.00 0.00 1.00 0 0
c 1.00 0.00 0.00 25 25 25 1.00 0.00 1.00 0.00 0 0
g 0.00 0.00 0.00 25 25 25 0.00 0.00 0.00 0.00 0 0
t 0.00 0.00 1.00 25 25 25 0.00 0.00 0.00 0.00 0 0
|
NAC_domain-containing_protein_19_3swm_B_3D-footprint_rc_shift2 (NAC_domain-containing_protein_19_3swm_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/NAC_domain-containing_protein_19_3swm_B_3D-footprint_rc_shift2.png) |
0.898 |
0.449 |
0.080 |
-0.107 |
0.903 |
0.468 |
0.953 |
2 |
17 |
22 |
20 |
6 |
1 |
1 |
9.857 |
6 |
; oligos_5-7nt_m4 versus NAC_domain-containing_protein_19_3swm_B_3D-footprint_rc; m=2/3; ncol2=6; w=5; offset=-1; strand=R; shift=2; score= 9.8571; --CAnGCA----
; cor=0.898; Ncor=0.449; logoDP=0.080; NIcor=-0.107; NsEucl=0.903; SSD=0.468; NSW=0.953; rcor=2; rNcor=17; rlogoDP=22; rNIcor=20; rNsEucl=6; rSSD=1; rNSW=1; rank_mean=9.857; match_rank=6
a 0 0 0 73 24 7 7 73 0 0 0 0
c 0 0 96 7 24 7 73 7 0 0 0 0
g 0 0 0 9 24 75 9 7 0 0 0 0
t 0 0 0 7 24 7 7 9 0 0 0 0
|
CONS_ARATH_CONS1_EEADannot_rc_shift1 (CONS_ARATH_CONS1_EEADannot_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CONS_ARATH_CONS1_EEADannot_rc_shift1.png) |
0.791 |
0.504 |
1.937 |
0.016 |
0.873 |
1.569 |
0.888 |
14 |
13 |
17 |
19 |
21 |
13 |
20 |
16.714 |
20 |
; oligos_5-7nt_m4 versus CONS_ARATH_CONS1_EEADannot_rc; m=3/3; ncol2=9; w=7; offset=-2; strand=R; shift=1; score=16.7143; -CATnnCACA--
; cor=0.791; Ncor=0.504; logoDP=1.937; NIcor=0.016; NsEucl=0.873; SSD=1.569; NSW=0.888; rcor=14; rNcor=13; rlogoDP=17; rNIcor=19; rNsEucl=21; rSSD=13; rNSW=20; rank_mean=16.714; match_rank=20
a 0 0.00 1.00 0.00 25 25 0.00 1.00 0.00 1.00 0 0
c 0 1.00 0.00 0.00 25 25 1.00 0.00 1.00 0.00 0 0
g 0 0.00 0.00 0.00 25 25 0.00 0.00 0.00 0.00 0 0
t 0 0.00 0.00 1.00 25 25 0.00 0.00 0.00 0.00 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
dyads_test_vs_ctrl_m1_shift6 (dyads_test_vs_ctrl_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/dyads_test_vs_ctrl_m1_shift6.png) |
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; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=10; shift=6; ncol=16; ------wyGTTTTAwr
; Alignment reference
a 0 0 0 0 0 0 22 10 0 0 0 0 0 65 17 20
c 0 0 0 0 0 0 10 17 0 0 0 0 0 0 12 16
g 0 0 0 0 0 0 10 16 65 0 0 0 0 0 15 21
t 0 0 0 0 0 0 23 22 0 65 65 65 65 0 21 8
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift10 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift10.png) |
0.887 |
0.443 |
2.596 |
0.139 |
0.899 |
0.742 |
0.938 |
4 |
20 |
16 |
14 |
14 |
3 |
5 |
10.857 |
9 |
; dyads_test_vs_ctrl_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=1/2; ncol2=8; w=6; offset=4; strand=R; shift=10; score=10.8571; ----------TTTAAA
; cor=0.887; Ncor=0.443; logoDP=2.596; NIcor=0.139; NsEucl=0.899; SSD=0.742; NSW=0.938; rcor=4; rNcor=20; rlogoDP=16; rNIcor=14; rNsEucl=14; rSSD=3; rNSW=5; rank_mean=10.857; match_rank=9
a 0 0 0 0 0 0 0 0 0 0 0 0 9 96 78 72
c 0 0 0 0 0 0 0 0 0 0 8 0 0 0 8 8
g 0 0 0 0 0 0 0 0 0 0 1 0 0 0 8 8
t 0 0 0 0 0 0 0 0 0 0 87 96 87 0 2 8
|
SR1_SR1_Athamap_rc_shift0 (SR1_SR1_Athamap_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SR1_SR1_Athamap_rc_shift0.png) |
0.801 |
0.400 |
3.965 |
0.053 |
0.874 |
2.044 |
0.872 |
12 |
22 |
8 |
17 |
20 |
21 |
21 |
17.286 |
21 |
; dyads_test_vs_ctrl_m1 versus SR1_SR1_Athamap_rc; m=2/2; ncol2=14; w=8; offset=-6; strand=R; shift=0; score=17.2857; TGTTsCGCGkTTTA--
; cor=0.801; Ncor=0.400; logoDP=3.965; NIcor=0.053; NsEucl=0.874; SSD=2.044; NSW=0.872; rcor=12; rNcor=22; rlogoDP=8; rNIcor=17; rNsEucl=20; rSSD=21; rNSW=21; rank_mean=17.286; match_rank=21
a 0 0 0 0 1 0 0 0 0 0 0 0 0 5 0 0
c 0 0 0 0 2 5 0 5 0 0 0 0 0 0 0 0
g 0 5 0 0 2 0 5 0 5 2 0 0 0 0 0 0
t 5 0 5 5 0 0 0 0 0 3 5 5 5 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m1_shift5 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift5.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m1; m=0 (reference); ncol1=11; shift=5; ncol=16; -----wwcGTTTTAtr
; Alignment reference
a 0 0 0 0 0 39 42 10 2 5 2 1 2 123 32 40
c 0 0 0 0 0 21 24 85 5 2 9 7 4 7 28 32
g 0 0 0 0 0 27 26 16 121 4 2 5 3 2 29 34
t 0 0 0 0 0 46 41 22 5 122 120 120 124 1 44 27
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift10 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift10.png) |
0.883 |
0.408 |
1.732 |
0.135 |
0.897 |
0.759 |
0.937 |
5 |
21 |
19 |
15 |
15 |
5 |
6 |
12.286 |
14 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=1/2; ncol2=8; w=6; offset=5; strand=R; shift=10; score=12.2857; ----------TTTAAA
; cor=0.883; Ncor=0.408; logoDP=1.732; NIcor=0.135; NsEucl=0.897; SSD=0.759; NSW=0.937; rcor=5; rNcor=21; rlogoDP=19; rNIcor=15; rNsEucl=15; rSSD=5; rNSW=6; rank_mean=12.286; match_rank=14
a 0 0 0 0 0 0 0 0 0 0 0 0 9 96 78 72
c 0 0 0 0 0 0 0 0 0 0 8 0 0 0 8 8
g 0 0 0 0 0 0 0 0 0 0 1 0 0 0 8 8
t 0 0 0 0 0 0 0 0 0 0 87 96 87 0 2 8
|
SR1_SR1_Athamap_rc_shift0 (SR1_SR1_Athamap_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SR1_SR1_Athamap_rc_shift0.png) |
0.796 |
0.448 |
3.081 |
0.097 |
0.881 |
2.302 |
0.872 |
13 |
18 |
14 |
16 |
19 |
22 |
22 |
17.714 |
22 |
; oligos_5-7nt_m1 versus SR1_SR1_Athamap_rc; m=2/2; ncol2=14; w=9; offset=-5; strand=R; shift=0; score=17.7143; TGTTsCGCGkTTTA--
; cor=0.796; Ncor=0.448; logoDP=3.081; NIcor=0.097; NsEucl=0.881; SSD=2.302; NSW=0.872; rcor=13; rNcor=18; rlogoDP=14; rNIcor=16; rNsEucl=19; rSSD=22; rNSW=22; rank_mean=17.714; match_rank=22
a 0 0 0 0 1 0 0 0 0 0 0 0 0 5 0 0
c 0 0 0 0 2 5 0 5 0 0 0 0 0 0 0 0
g 0 5 0 0 2 0 5 0 5 2 0 0 0 0 0 0
t 5 0 5 5 0 0 0 0 0 3 5 5 5 0 0 0
|