One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 5/regulon5.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o 5/regulon5.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m2_shift2 ; 11 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m2_shift2 (oligos_5-7nt_m2)
; oligos_5-7nt_m2; m=0 (reference); ncol1=10; shift=2; ncol=13; --rcATGCATgy- ; Alignment reference a 0 0 21 17 76 0 0 0 76 0 15 14 0 c 0 0 12 38 0 0 0 76 0 0 6 29 0 g 0 0 29 6 0 0 76 0 0 0 38 12 0 t 0 0 14 15 0 76 0 0 0 76 17 21 0

LEC2_M0146_1.02_CISBP_shift4 (LEC2_M0146_1.02_CISBP) 0.898 0.718 10.467 0.679 0.908 1.081 0.932 7 4 1 2 11 11 11 6.714 1
; oligos_5-7nt_m2 versus LEC2_M0146_1.02_CISBP; m=1/10; ncol2=8; w=8; offset=2; strand=D; shift=4; score= 6.7143; ----mTGCATGC- ; cor=0.898; Ncor=0.718; logoDP=10.467; NIcor=0.679; NsEucl=0.908; SSD=1.081; NSW=0.932; rcor=7; rNcor=4; rlogoDP=1; rNIcor=2; rNsEucl=11; rSSD=11; rNSW=11; rank_mean=6.714; match_rank=1 a 0 0 0 0 67 0 0 0 100 0 0 0 0 c 0 0 0 0 33 0 0 100 0 0 0 100 0 g 0 0 0 0 0 0 100 0 0 0 100 0 0 t 0 0 0 0 0 100 0 0 0 100 0 0 0

ABI3_ABI3_Athamap_shift0 (ABI3_ABI3_Athamap) 0.940 0.548 9.750 0.542 0.924 0.568 0.959 3 25 3 21 5 5 5 9.571 3
; oligos_5-7nt_m2 versus ABI3_ABI3_Athamap; m=2/10; ncol2=9; w=7; offset=-2; strand=D; shift=0; score= 9.5714; sksCATGCA---- ; cor=0.940; Ncor=0.548; logoDP=9.750; NIcor=0.542; NsEucl=0.924; SSD=0.568; NSW=0.959; rcor=3; rNcor=25; rlogoDP=3; rNIcor=21; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=9.571; match_rank=3 a 0 0 0 0 3 0 0 0 3 0 0 0 0 c 1 0 1 3 0 0 0 3 0 0 0 0 0 g 2 1 2 0 0 0 3 0 0 0 0 0 0 t 0 2 0 0 0 3 0 0 0 0 0 0 0

ABI3_MA0564.1_JASPAR_shift0 (ABI3_MA0564.1_JASPAR) 0.872 0.509 6.065 0.473 0.900 0.979 0.930 11 29 8 30 22 10 12 17.429 10
; oligos_5-7nt_m2 versus ABI3_MA0564.1_JASPAR; m=3/10; ncol2=9; w=7; offset=-2; strand=D; shift=0; score=17.4286; ytGCATGCa---- ; cor=0.872; Ncor=0.509; logoDP=6.065; NIcor=0.473; NsEucl=0.900; SSD=0.979; NSW=0.930; rcor=11; rNcor=29; rlogoDP=8; rNIcor=30; rNsEucl=22; rSSD=10; rNSW=12; rank_mean=17.429; match_rank=10 a 6 15 3 1 97 1 1 6 50 0 0 0 0 c 60 16 7 96 1 1 1 84 15 0 0 0 0 g 9 15 85 2 1 1 96 8 13 0 0 0 0 t 25 53 5 1 1 97 1 2 22 0 0 0 0

FUS3_FUS3_Athamap_rc_shift4 (FUS3_FUS3_Athamap_rc) 0.928 0.743 0.063 -0.226 0.925 0.725 0.955 5 2 51 52 4 8 8 18.571 12
; oligos_5-7nt_m2 versus FUS3_FUS3_Athamap_rc; m=4/10; ncol2=8; w=8; offset=2; strand=R; shift=4; score=18.5714; ----WTGCATGS- ; cor=0.928; Ncor=0.743; logoDP=0.063; NIcor=-0.226; NsEucl=0.925; SSD=0.725; NSW=0.955; rcor=5; rNcor=2; rlogoDP=51; rNIcor=52; rNsEucl=4; rSSD=8; rNSW=8; rank_mean=18.571; match_rank=12 a 0 0 0 0 3 0 0 0 4 0 0 0 0 c 0 0 0 0 0 0 0 4 0 0 0 3 0 g 0 0 0 0 0 0 4 0 0 0 4 1 0 t 0 0 0 0 1 4 0 0 0 4 0 0 0

IDEF1_M01880_TRANSFAC_shift3 (IDEF1_M01880_TRANSFAC) 0.821 0.568 6.333 0.564 0.902 1.550 0.914 19 21 7 16 20 31 23 19.571 13
; oligos_5-7nt_m2 versus IDEF1_M01880_TRANSFAC; m=5/10; ncol2=12; w=9; offset=1; strand=D; shift=3; score=19.5714; ---SAwGCwTsAw ; cor=0.821; Ncor=0.568; logoDP=6.333; NIcor=0.564; NsEucl=0.902; SSD=1.550; NSW=0.914; rcor=19; rNcor=21; rlogoDP=7; rNIcor=16; rNsEucl=20; rSSD=31; rNSW=23; rank_mean=19.571; match_rank=13 a 0 0 0 0 8 2 0 0 5 0 1 6 2 c 0 0 0 6 0 0 1 6 0 0 4 1 1 g 0 0 0 2 0 1 6 1 0 0 3 0 0 t 0 0 0 0 0 5 1 1 3 8 0 1 5

AtLEC2_AtLEC2_Athamap_shift1 (AtLEC2_AtLEC2_Athamap) 0.782 0.640 9.807 0.638 0.886 2.121 0.882 37 12 2 8 34 51 48 27.429 25
; oligos_5-7nt_m2 versus AtLEC2_AtLEC2_Athamap; m=6/10; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=27.4286; -kyCATGCAaa-- ; cor=0.782; Ncor=0.640; logoDP=9.807; NIcor=0.638; NsEucl=0.886; SSD=2.121; NSW=0.882; rcor=37; rNcor=12; rlogoDP=2; rNIcor=8; rNsEucl=34; rSSD=51; rNSW=48; rank_mean=27.429; match_rank=25 a 0 2 2 0 9 0 0 0 9 5 5 0 0 c 0 0 4 9 0 0 0 9 0 1 1 0 0 g 0 3 0 0 0 0 9 0 0 1 1 0 0 t 0 4 3 0 0 9 0 0 0 1 1 0 0

EIN3_M0682_1.02_CISBP_shift2 (EIN3_M0682_1.02_CISBP) 0.767 0.767 1.814 0.805 0.891 2.360 0.882 44 1 33 1 29 52 49 29.857 34
; oligos_5-7nt_m2 versus EIN3_M0682_1.02_CISBP; m=7/10; ncol2=10; w=10; offset=0; strand=D; shift=2; score=29.8571; --kgrTryAycm- ; cor=0.767; Ncor=0.767; logoDP=1.814; NIcor=0.805; NsEucl=0.891; SSD=2.360; NSW=0.882; rcor=44; rNcor=1; rlogoDP=33; rNIcor=1; rNsEucl=29; rSSD=52; rNSW=49; rank_mean=29.857; match_rank=34 a 0 0 24 24 45 9 30 18 73 11 24 25 0 c 0 0 22 16 9 18 5 47 0 35 36 29 0 g 0 0 29 36 35 0 47 5 19 9 16 22 0 t 0 0 25 24 11 73 18 30 8 45 24 24 0

LEC2_MA0581.1_JASPAR_rc_shift2 (LEC2_MA0581.1_JASPAR_rc) 0.791 0.719 0.017 -0.175 0.903 1.887 0.906 31 3 52 51 17 47 31 33.143 38
; oligos_5-7nt_m2 versus LEC2_MA0581.1_JASPAR_rc; m=8/10; ncol2=11; w=10; offset=0; strand=R; shift=2; score=33.1429; --awgyGCATGsa ; cor=0.791; Ncor=0.719; logoDP=0.017; NIcor=-0.175; NsEucl=0.903; SSD=1.887; NSW=0.906; rcor=31; rNcor=3; rlogoDP=52; rNIcor=51; rNsEucl=17; rSSD=47; rNSW=31; rank_mean=33.143; match_rank=38 a 0 0 250 129 94 0 0 0 487 0 10 63 175 c 0 0 62 44 60 156 0 487 0 0 0 165 119 g 0 0 79 86 218 30 487 0 0 0 475 163 86 t 0 0 96 228 115 301 0 0 0 487 2 96 107

NAC_domain-containing_protein_19_3swm_B_3D-footprint_shift5 (NAC_domain-containing_protein_19_3swm_B_3D-footprint) 0.801 0.480 2.616 0.428 0.861 1.389 0.884 22 38 24 35 52 21 45 33.857 42
; oligos_5-7nt_m2 versus NAC_domain-containing_protein_19_3swm_B_3D-footprint; m=9/10; ncol2=6; w=6; offset=3; strand=D; shift=5; score=33.8571; -----TGCnTG-- ; cor=0.801; Ncor=0.480; logoDP=2.616; NIcor=0.428; NsEucl=0.861; SSD=1.389; NSW=0.884; rcor=22; rNcor=38; rlogoDP=24; rNIcor=35; rNsEucl=52; rSSD=21; rNSW=45; rank_mean=33.857; match_rank=42 a 0 0 0 0 0 9 7 7 24 7 0 0 0 c 0 0 0 0 0 7 9 75 24 9 0 0 0 g 0 0 0 0 0 7 73 7 24 7 96 0 0 t 0 0 0 0 0 73 7 7 24 73 0 0 0

FUS3_MA0565.1_JASPAR_rc_shift0 (FUS3_MA0565.1_JASPAR_rc) 0.799 0.466 0.173 -0.169 0.869 1.685 0.880 26 43 50 49 51 42 51 44.571 52
; oligos_5-7nt_m2 versus FUS3_MA0565.1_JASPAR_rc; m=10/10; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=44.5714; syGCATGCr---- ; cor=0.799; Ncor=0.466; logoDP=0.173; NIcor=-0.169; NsEucl=0.869; SSD=1.685; NSW=0.880; rcor=26; rNcor=43; rlogoDP=50; rNIcor=49; rNsEucl=51; rSSD=42; rNSW=51; rank_mean=44.571; match_rank=52 a 16 9 1 1 99 1 0 1 28 0 0 0 0 c 25 59 2 99 1 0 0 97 4 0 0 0 0 g 44 3 97 0 0 0 99 2 61 0 0 0 0 t 15 29 1 0 1 99 1 1 8 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m2_shift2 (oligos_5-7nt_m2)																	; oligos_5-7nt_m2; m=0 (reference); ncol1=10; shift=2; ncol=13; --rcATGCATgy- ; Alignment reference a 0 0 21 17 76 0 0 0 76 0 15 14 0 c 0 0 12 38 0 0 0 76 0 0 6 29 0 g 0 0 29 6 0 0 76 0 0 0 38 12 0 t 0 0 14 15 0 76 0 0 0 76 17 21 0
LEC2_M0146_1.02_CISBP_shift4 (LEC2_M0146_1.02_CISBP)	0.898	0.718	10.467	0.679	0.908	1.081	0.932	7	4	1	2	11	11	11	6.714	1	; oligos_5-7nt_m2 versus LEC2_M0146_1.02_CISBP; m=1/10; ncol2=8; w=8; offset=2; strand=D; shift=4; score= 6.7143; ----mTGCATGC- ; cor=0.898; Ncor=0.718; logoDP=10.467; NIcor=0.679; NsEucl=0.908; SSD=1.081; NSW=0.932; rcor=7; rNcor=4; rlogoDP=1; rNIcor=2; rNsEucl=11; rSSD=11; rNSW=11; rank_mean=6.714; match_rank=1 a 0 0 0 0 67 0 0 0 100 0 0 0 0 c 0 0 0 0 33 0 0 100 0 0 0 100 0 g 0 0 0 0 0 0 100 0 0 0 100 0 0 t 0 0 0 0 0 100 0 0 0 100 0 0 0
ABI3_ABI3_Athamap_shift0 (ABI3_ABI3_Athamap)	0.940	0.548	9.750	0.542	0.924	0.568	0.959	3	25	3	21	5	5	5	9.571	3	; oligos_5-7nt_m2 versus ABI3_ABI3_Athamap; m=2/10; ncol2=9; w=7; offset=-2; strand=D; shift=0; score= 9.5714; sksCATGCA---- ; cor=0.940; Ncor=0.548; logoDP=9.750; NIcor=0.542; NsEucl=0.924; SSD=0.568; NSW=0.959; rcor=3; rNcor=25; rlogoDP=3; rNIcor=21; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=9.571; match_rank=3 a 0 0 0 0 3 0 0 0 3 0 0 0 0 c 1 0 1 3 0 0 0 3 0 0 0 0 0 g 2 1 2 0 0 0 3 0 0 0 0 0 0 t 0 2 0 0 0 3 0 0 0 0 0 0 0
ABI3_MA0564.1_JASPAR_shift0 (ABI3_MA0564.1_JASPAR)	0.872	0.509	6.065	0.473	0.900	0.979	0.930	11	29	8	30	22	10	12	17.429	10	; oligos_5-7nt_m2 versus ABI3_MA0564.1_JASPAR; m=3/10; ncol2=9; w=7; offset=-2; strand=D; shift=0; score=17.4286; ytGCATGCa---- ; cor=0.872; Ncor=0.509; logoDP=6.065; NIcor=0.473; NsEucl=0.900; SSD=0.979; NSW=0.930; rcor=11; rNcor=29; rlogoDP=8; rNIcor=30; rNsEucl=22; rSSD=10; rNSW=12; rank_mean=17.429; match_rank=10 a 6 15 3 1 97 1 1 6 50 0 0 0 0 c 60 16 7 96 1 1 1 84 15 0 0 0 0 g 9 15 85 2 1 1 96 8 13 0 0 0 0 t 25 53 5 1 1 97 1 2 22 0 0 0 0
FUS3_FUS3_Athamap_rc_shift4 (FUS3_FUS3_Athamap_rc)	0.928	0.743	0.063	-0.226	0.925	0.725	0.955	5	2	51	52	4	8	8	18.571	12	; oligos_5-7nt_m2 versus FUS3_FUS3_Athamap_rc; m=4/10; ncol2=8; w=8; offset=2; strand=R; shift=4; score=18.5714; ----WTGCATGS- ; cor=0.928; Ncor=0.743; logoDP=0.063; NIcor=-0.226; NsEucl=0.925; SSD=0.725; NSW=0.955; rcor=5; rNcor=2; rlogoDP=51; rNIcor=52; rNsEucl=4; rSSD=8; rNSW=8; rank_mean=18.571; match_rank=12 a 0 0 0 0 3 0 0 0 4 0 0 0 0 c 0 0 0 0 0 0 0 4 0 0 0 3 0 g 0 0 0 0 0 0 4 0 0 0 4 1 0 t 0 0 0 0 1 4 0 0 0 4 0 0 0
IDEF1_M01880_TRANSFAC_shift3 (IDEF1_M01880_TRANSFAC)	0.821	0.568	6.333	0.564	0.902	1.550	0.914	19	21	7	16	20	31	23	19.571	13	; oligos_5-7nt_m2 versus IDEF1_M01880_TRANSFAC; m=5/10; ncol2=12; w=9; offset=1; strand=D; shift=3; score=19.5714; ---SAwGCwTsAw ; cor=0.821; Ncor=0.568; logoDP=6.333; NIcor=0.564; NsEucl=0.902; SSD=1.550; NSW=0.914; rcor=19; rNcor=21; rlogoDP=7; rNIcor=16; rNsEucl=20; rSSD=31; rNSW=23; rank_mean=19.571; match_rank=13 a 0 0 0 0 8 2 0 0 5 0 1 6 2 c 0 0 0 6 0 0 1 6 0 0 4 1 1 g 0 0 0 2 0 1 6 1 0 0 3 0 0 t 0 0 0 0 0 5 1 1 3 8 0 1 5
AtLEC2_AtLEC2_Athamap_shift1 (AtLEC2_AtLEC2_Athamap)	0.782	0.640	9.807	0.638	0.886	2.121	0.882	37	12	2	8	34	51	48	27.429	25	; oligos_5-7nt_m2 versus AtLEC2_AtLEC2_Athamap; m=6/10; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=27.4286; -kyCATGCAaa-- ; cor=0.782; Ncor=0.640; logoDP=9.807; NIcor=0.638; NsEucl=0.886; SSD=2.121; NSW=0.882; rcor=37; rNcor=12; rlogoDP=2; rNIcor=8; rNsEucl=34; rSSD=51; rNSW=48; rank_mean=27.429; match_rank=25 a 0 2 2 0 9 0 0 0 9 5 5 0 0 c 0 0 4 9 0 0 0 9 0 1 1 0 0 g 0 3 0 0 0 0 9 0 0 1 1 0 0 t 0 4 3 0 0 9 0 0 0 1 1 0 0
EIN3_M0682_1.02_CISBP_shift2 (EIN3_M0682_1.02_CISBP)	0.767	0.767	1.814	0.805	0.891	2.360	0.882	44	1	33	1	29	52	49	29.857	34	; oligos_5-7nt_m2 versus EIN3_M0682_1.02_CISBP; m=7/10; ncol2=10; w=10; offset=0; strand=D; shift=2; score=29.8571; --kgrTryAycm- ; cor=0.767; Ncor=0.767; logoDP=1.814; NIcor=0.805; NsEucl=0.891; SSD=2.360; NSW=0.882; rcor=44; rNcor=1; rlogoDP=33; rNIcor=1; rNsEucl=29; rSSD=52; rNSW=49; rank_mean=29.857; match_rank=34 a 0 0 24 24 45 9 30 18 73 11 24 25 0 c 0 0 22 16 9 18 5 47 0 35 36 29 0 g 0 0 29 36 35 0 47 5 19 9 16 22 0 t 0 0 25 24 11 73 18 30 8 45 24 24 0
LEC2_MA0581.1_JASPAR_rc_shift2 (LEC2_MA0581.1_JASPAR_rc)	0.791	0.719	0.017	-0.175	0.903	1.887	0.906	31	3	52	51	17	47	31	33.143	38	; oligos_5-7nt_m2 versus LEC2_MA0581.1_JASPAR_rc; m=8/10; ncol2=11; w=10; offset=0; strand=R; shift=2; score=33.1429; --awgyGCATGsa ; cor=0.791; Ncor=0.719; logoDP=0.017; NIcor=-0.175; NsEucl=0.903; SSD=1.887; NSW=0.906; rcor=31; rNcor=3; rlogoDP=52; rNIcor=51; rNsEucl=17; rSSD=47; rNSW=31; rank_mean=33.143; match_rank=38 a 0 0 250 129 94 0 0 0 487 0 10 63 175 c 0 0 62 44 60 156 0 487 0 0 0 165 119 g 0 0 79 86 218 30 487 0 0 0 475 163 86 t 0 0 96 228 115 301 0 0 0 487 2 96 107
NAC_domain-containing_protein_19_3swm_B_3D-footprint_shift5 (NAC_domain-containing_protein_19_3swm_B_3D-footprint)	0.801	0.480	2.616	0.428	0.861	1.389	0.884	22	38	24	35	52	21	45	33.857	42	; oligos_5-7nt_m2 versus NAC_domain-containing_protein_19_3swm_B_3D-footprint; m=9/10; ncol2=6; w=6; offset=3; strand=D; shift=5; score=33.8571; -----TGCnTG-- ; cor=0.801; Ncor=0.480; logoDP=2.616; NIcor=0.428; NsEucl=0.861; SSD=1.389; NSW=0.884; rcor=22; rNcor=38; rlogoDP=24; rNIcor=35; rNsEucl=52; rSSD=21; rNSW=45; rank_mean=33.857; match_rank=42 a 0 0 0 0 0 9 7 7 24 7 0 0 0 c 0 0 0 0 0 7 9 75 24 9 0 0 0 g 0 0 0 0 0 7 73 7 24 7 96 0 0 t 0 0 0 0 0 73 7 7 24 73 0 0 0
FUS3_MA0565.1_JASPAR_rc_shift0 (FUS3_MA0565.1_JASPAR_rc)	0.799	0.466	0.173	-0.169	0.869	1.685	0.880	26	43	50	49	51	42	51	44.571	52	; oligos_5-7nt_m2 versus FUS3_MA0565.1_JASPAR_rc; m=10/10; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=44.5714; syGCATGCr---- ; cor=0.799; Ncor=0.466; logoDP=0.173; NIcor=-0.169; NsEucl=0.869; SSD=1.685; NSW=0.880; rcor=26; rNcor=43; rlogoDP=50; rNIcor=49; rNsEucl=51; rSSD=42; rNSW=51; rank_mean=44.571; match_rank=52 a 16 9 1 1 99 1 0 1 28 0 0 0 0 c 25 59 2 99 1 0 0 97 4 0 0 0 0 g 44 3 97 0 0 0 99 2 61 0 0 0 0 t 15 29 1 0 1 99 1 1 8 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m5_shift1 ; 6 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m5_shift1 (oligos_5-7nt_m5)
; oligos_5-7nt_m5; m=0 (reference); ncol1=9; shift=1; ncol=13; -wcATGTGww--- ; Alignment reference a 0 44 28 130 0 0 0 0 37 37 0 0 0 c 0 15 49 0 0 0 0 0 29 27 0 0 0 g 0 31 25 0 0 130 0 130 31 27 0 0 0 t 0 40 28 0 130 0 130 0 33 39 0 0 0

CONS_ARATH_CONS1_EEADannot_shift4 (CONS_ARATH_CONS1_EEADannot) 0.998 0.499 7.687 0.500 0.989 0.009 0.999 1 31 4 25 1 1 1 9.143 2
; oligos_5-7nt_m5 versus CONS_ARATH_CONS1_EEADannot; m=1/5; ncol2=9; w=6; offset=3; strand=D; shift=4; score= 9.1429; ----TGTGnnATG ; cor=0.998; Ncor=0.499; logoDP=7.687; NIcor=0.500; NsEucl=0.989; SSD=0.009; NSW=0.999; rcor=1; rNcor=31; rlogoDP=4; rNIcor=25; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=9.143; match_rank=2 a 0 0 0 0 0.00 0.00 0.00 0.00 25 25 1.00 0.00 0.00 c 0 0 0 0 0.00 0.00 0.00 0.00 25 25 0.00 0.00 0.00 g 0 0 0 0 0.00 1.00 0.00 1.00 25 25 0.00 0.00 1.00 t 0 0 0 0 1.00 0.00 1.00 0.00 25 25 0.00 1.00 0.00

CONS_ARATH_CONS2_EEADannot_shift4 (CONS_ARATH_CONS2_EEADannot) 0.998 0.461 7.687 0.461 0.989 0.009 0.999 1 46 4 31 1 1 1 12.143 6
; oligos_5-7nt_m5 versus CONS_ARATH_CONS2_EEADannot; m=2/5; ncol2=10; w=6; offset=3; strand=D; shift=4; score=12.1429; ----TGTGnnnAT ; cor=0.998; Ncor=0.461; logoDP=7.687; NIcor=0.461; NsEucl=0.989; SSD=0.009; NSW=0.999; rcor=1; rNcor=46; rlogoDP=4; rNIcor=31; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=12.143; match_rank=6 a 0 0 0 0 0.00 0.00 0.00 0.00 25 25 25 1.00 0.00 c 0 0 0 0 0.00 0.00 0.00 0.00 25 25 25 0.00 0.00 g 0 0 0 0 0.00 1.00 0.00 1.00 25 25 25 0.00 0.00 t 0 0 0 0 1.00 0.00 1.00 0.00 25 25 25 0.00 1.00

POC1_M0151_1.02_CISBP_shift2 (POC1_M0151_1.02_CISBP) 0.823 0.640 5.797 0.624 0.888 1.221 0.913 18 11 12 9 33 15 25 17.571 11
; oligos_5-7nt_m5 versus POC1_M0151_1.02_CISBP; m=3/5; ncol2=7; w=7; offset=1; strand=D; shift=2; score=17.5714; --cAYGTGs---- ; cor=0.823; Ncor=0.640; logoDP=5.797; NIcor=0.624; NsEucl=0.888; SSD=1.221; NSW=0.913; rcor=18; rNcor=11; rlogoDP=12; rNIcor=9; rNsEucl=33; rSSD=15; rNSW=25; rank_mean=17.571; match_rank=11 a 0 0 18 74 0 0 0 2 22 0 0 0 0 c 0 0 55 0 71 0 0 1 30 0 0 0 0 g 0 0 14 16 0 88 0 97 35 0 0 0 0 t 0 0 13 10 29 12 100 0 13 0 0 0 0

ZCW32_M0153_1.02_CISBP_shift0 (ZCW32_M0153_1.02_CISBP) 0.773 0.618 4.400 0.610 0.890 1.535 0.904 41 13 18 10 30 29 33 24.857 22
; oligos_5-7nt_m5 versus ZCW32_M0153_1.02_CISBP; m=4/5; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=24.8571; sscACGTGs---- ; cor=0.773; Ncor=0.618; logoDP=4.400; NIcor=0.610; NsEucl=0.890; SSD=1.535; NSW=0.904; rcor=41; rNcor=13; rlogoDP=18; rNIcor=10; rNsEucl=30; rSSD=29; rNSW=33; rank_mean=24.857; match_rank=22 a 23 22 20 69 2 16 2 1 19 0 0 0 0 c 27 30 53 10 75 0 5 4 34 0 0 0 0 g 29 26 13 14 4 83 0 93 26 0 0 0 0 t 21 22 14 7 19 1 93 2 21 0 0 0 0

PIF5_MA0562.1_JASPAR_rc_shift1 (PIF5_MA0562.1_JASPAR_rc) 0.752 0.668 6.519 0.538 0.871 2.117 0.868 50 10 6 22 46 50 52 33.714 41
; oligos_5-7nt_m5 versus PIF5_MA0562.1_JASPAR_rc; m=5/5; ncol2=8; w=8; offset=0; strand=R; shift=1; score=33.7143; -sCAYGTGR---- ; cor=0.752; Ncor=0.668; logoDP=6.519; NIcor=0.538; NsEucl=0.871; SSD=2.117; NSW=0.868; rcor=50; rNcor=10; rlogoDP=6; rNIcor=22; rNsEucl=46; rSSD=50; rNSW=52; rank_mean=33.714; match_rank=41 a 0 30 0 286 0 0 0 0 208 0 0 0 0 c 0 161 286 0 195 0 0 0 0 0 0 0 0 g 0 95 0 0 0 286 0 286 78 0 0 0 0 t 0 0 0 0 91 0 286 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m5_shift1 (oligos_5-7nt_m5)																	; oligos_5-7nt_m5; m=0 (reference); ncol1=9; shift=1; ncol=13; -wcATGTGww--- ; Alignment reference a 0 44 28 130 0 0 0 0 37 37 0 0 0 c 0 15 49 0 0 0 0 0 29 27 0 0 0 g 0 31 25 0 0 130 0 130 31 27 0 0 0 t 0 40 28 0 130 0 130 0 33 39 0 0 0
CONS_ARATH_CONS1_EEADannot_shift4 (CONS_ARATH_CONS1_EEADannot)	0.998	0.499	7.687	0.500	0.989	0.009	0.999	1	31	4	25	1	1	1	9.143	2	; oligos_5-7nt_m5 versus CONS_ARATH_CONS1_EEADannot; m=1/5; ncol2=9; w=6; offset=3; strand=D; shift=4; score= 9.1429; ----TGTGnnATG ; cor=0.998; Ncor=0.499; logoDP=7.687; NIcor=0.500; NsEucl=0.989; SSD=0.009; NSW=0.999; rcor=1; rNcor=31; rlogoDP=4; rNIcor=25; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=9.143; match_rank=2 a 0 0 0 0 0.00 0.00 0.00 0.00 25 25 1.00 0.00 0.00 c 0 0 0 0 0.00 0.00 0.00 0.00 25 25 0.00 0.00 0.00 g 0 0 0 0 0.00 1.00 0.00 1.00 25 25 0.00 0.00 1.00 t 0 0 0 0 1.00 0.00 1.00 0.00 25 25 0.00 1.00 0.00
CONS_ARATH_CONS2_EEADannot_shift4 (CONS_ARATH_CONS2_EEADannot)	0.998	0.461	7.687	0.461	0.989	0.009	0.999	1	46	4	31	1	1	1	12.143	6	; oligos_5-7nt_m5 versus CONS_ARATH_CONS2_EEADannot; m=2/5; ncol2=10; w=6; offset=3; strand=D; shift=4; score=12.1429; ----TGTGnnnAT ; cor=0.998; Ncor=0.461; logoDP=7.687; NIcor=0.461; NsEucl=0.989; SSD=0.009; NSW=0.999; rcor=1; rNcor=46; rlogoDP=4; rNIcor=31; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=12.143; match_rank=6 a 0 0 0 0 0.00 0.00 0.00 0.00 25 25 25 1.00 0.00 c 0 0 0 0 0.00 0.00 0.00 0.00 25 25 25 0.00 0.00 g 0 0 0 0 0.00 1.00 0.00 1.00 25 25 25 0.00 0.00 t 0 0 0 0 1.00 0.00 1.00 0.00 25 25 25 0.00 1.00
POC1_M0151_1.02_CISBP_shift2 (POC1_M0151_1.02_CISBP)	0.823	0.640	5.797	0.624	0.888	1.221	0.913	18	11	12	9	33	15	25	17.571	11	; oligos_5-7nt_m5 versus POC1_M0151_1.02_CISBP; m=3/5; ncol2=7; w=7; offset=1; strand=D; shift=2; score=17.5714; --cAYGTGs---- ; cor=0.823; Ncor=0.640; logoDP=5.797; NIcor=0.624; NsEucl=0.888; SSD=1.221; NSW=0.913; rcor=18; rNcor=11; rlogoDP=12; rNIcor=9; rNsEucl=33; rSSD=15; rNSW=25; rank_mean=17.571; match_rank=11 a 0 0 18 74 0 0 0 2 22 0 0 0 0 c 0 0 55 0 71 0 0 1 30 0 0 0 0 g 0 0 14 16 0 88 0 97 35 0 0 0 0 t 0 0 13 10 29 12 100 0 13 0 0 0 0
ZCW32_M0153_1.02_CISBP_shift0 (ZCW32_M0153_1.02_CISBP)	0.773	0.618	4.400	0.610	0.890	1.535	0.904	41	13	18	10	30	29	33	24.857	22	; oligos_5-7nt_m5 versus ZCW32_M0153_1.02_CISBP; m=4/5; ncol2=9; w=8; offset=-1; strand=D; shift=0; score=24.8571; sscACGTGs---- ; cor=0.773; Ncor=0.618; logoDP=4.400; NIcor=0.610; NsEucl=0.890; SSD=1.535; NSW=0.904; rcor=41; rNcor=13; rlogoDP=18; rNIcor=10; rNsEucl=30; rSSD=29; rNSW=33; rank_mean=24.857; match_rank=22 a 23 22 20 69 2 16 2 1 19 0 0 0 0 c 27 30 53 10 75 0 5 4 34 0 0 0 0 g 29 26 13 14 4 83 0 93 26 0 0 0 0 t 21 22 14 7 19 1 93 2 21 0 0 0 0
PIF5_MA0562.1_JASPAR_rc_shift1 (PIF5_MA0562.1_JASPAR_rc)	0.752	0.668	6.519	0.538	0.871	2.117	0.868	50	10	6	22	46	50	52	33.714	41	; oligos_5-7nt_m5 versus PIF5_MA0562.1_JASPAR_rc; m=5/5; ncol2=8; w=8; offset=0; strand=R; shift=1; score=33.7143; -sCAYGTGR---- ; cor=0.752; Ncor=0.668; logoDP=6.519; NIcor=0.538; NsEucl=0.871; SSD=2.117; NSW=0.868; rcor=50; rNcor=10; rlogoDP=6; rNIcor=22; rNsEucl=46; rSSD=50; rNSW=52; rank_mean=33.714; match_rank=41 a 0 30 0 286 0 0 0 0 208 0 0 0 0 c 0 161 286 0 195 0 0 0 0 0 0 0 0 g 0 95 0 0 0 286 0 286 78 0 0 0 0 t 0 0 0 0 91 0 286 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m4_shift6 ; 31 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m4_shift6 (oligos_5-7nt_m4)
; oligos_5-7nt_m4; m=0 (reference); ncol1=11; shift=6; ncol=20; ------aaAAAAGGAkr--- ; Alignment reference a 0 0 0 0 0 0 47 38 109 101 105 108 3 4 112 24 31 0 0 0 c 0 0 0 0 0 0 29 29 5 9 6 4 6 1 1 26 29 0 0 0 g 0 0 0 0 0 0 23 25 5 7 6 4 112 113 4 38 32 0 0 0 t 0 0 0 0 0 0 23 30 3 5 5 6 1 4 5 34 30 0 0 0

AY750993_VRN1_EEADannot_shift4 (AY750993_VRN1_EEADannot) 0.926 0.570 3.318 0.572 0.939 0.469 0.971 6 20 22 15 3 3 3 10.286 4
; oligos_5-7nt_m4 versus AY750993_VRN1_EEADannot; m=1/30; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=10.2857; ----CCarAAAwGG------ ; cor=0.926; Ncor=0.570; logoDP=3.318; NIcor=0.572; NsEucl=0.939; SSD=0.469; NSW=0.971; rcor=6; rNcor=20; rlogoDP=22; rNIcor=15; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=10.286; match_rank=4 a 0 0 0 0 19 9 57 56 95 84 79 57 24 15 0 0 0 0 0 0 c 0 0 0 0 72 71 17 7 1 1 7 3 0 0 0 0 0 0 0 0 g 0 0 0 0 7 8 14 31 4 3 7 9 76 85 0 0 0 0 0 0 t 0 0 0 0 2 12 12 6 0 12 7 31 0 0 0 0 0 0 0 0

Dof_M01136_TRANSFAC_shift5 (Dof_M01136_TRANSFAC) 0.826 0.689 4.717 0.661 0.919 1.324 0.934 16 7 15 5 9 19 9 11.429 5
; oligos_5-7nt_m4 versus Dof_M01136_TRANSFAC; m=2/30; ncol2=11; w=10; offset=-1; strand=D; shift=5; score=11.4286; -----amaaAAAGwar---- ; cor=0.826; Ncor=0.689; logoDP=4.717; NIcor=0.661; NsEucl=0.919; SSD=1.324; NSW=0.934; rcor=16; rNcor=7; rlogoDP=15; rNIcor=5; rNsEucl=9; rSSD=19; rNSW=9; rank_mean=11.429; match_rank=5 a 0 0 0 0 0 4 3 6 6 9 9 9 0 3 5 3 0 0 0 0 c 0 0 0 0 0 2 3 0 0 0 0 0 0 1 1 2 0 0 0 0 g 0 0 0 0 0 2 1 2 2 0 0 0 9 2 2 3 0 0 0 0 t 0 0 0 0 0 1 2 1 1 0 0 0 0 3 1 1 0 0 0 0

PBF_M01130_TRANSFAC_shift8 (PBF_M01130_TRANSFAC) 0.929 0.507 4.784 0.489 0.919 0.471 0.961 4 30 14 26 8 4 4 12.857 7
; oligos_5-7nt_m4 versus PBF_M01130_TRANSFAC; m=3/30; ncol2=6; w=6; offset=2; strand=D; shift=8; score=12.8571; --------wAAAGg------ ; cor=0.929; Ncor=0.507; logoDP=4.784; NIcor=0.489; NsEucl=0.919; SSD=0.471; NSW=0.961; rcor=4; rNcor=30; rlogoDP=14; rNIcor=26; rNsEucl=8; rSSD=4; rNSW=4; rank_mean=12.857; match_rank=7 a 0 0 0 0 0 0 0 0 6 11 11 11 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 1 0 0 0 11 7 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0 0 0

TMO6_M0654_1.02_CISBP_shift6 (TMO6_M0654_1.02_CISBP) 0.890 0.567 1.684 0.560 0.923 0.585 0.958 8 23 34 17 6 6 6 14.286 8
; oligos_5-7nt_m4 versus TMO6_M0654_1.02_CISBP; m=4/30; ncol2=7; w=7; offset=0; strand=D; shift=6; score=14.2857; ------vawAAmG------- ; cor=0.890; Ncor=0.567; logoDP=1.684; NIcor=0.560; NsEucl=0.923; SSD=0.585; NSW=0.958; rcor=8; rNcor=23; rlogoDP=34; rNIcor=17; rNsEucl=6; rSSD=6; rNSW=6; rank_mean=14.286; match_rank=8 a 0 0 0 0 0 0 25 33 40 84 85 61 7 0 0 0 0 0 0 0 c 0 0 0 0 0 0 25 21 13 6 8 33 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 26 23 15 2 0 1 77 0 0 0 0 0 0 0 t 0 0 0 0 0 0 24 23 32 8 7 5 11 0 0 0 0 0 0 0

DOF5.3_MA1071.1_JASPAR_shift6 (DOF5.3_MA1071.1_JASPAR) 0.888 0.565 1.681 0.558 0.922 0.597 0.957 9 24 35 18 7 7 7 15.286 9
; oligos_5-7nt_m4 versus DOF5.3_MA1071.1_JASPAR; m=5/30; ncol2=7; w=7; offset=0; strand=D; shift=6; score=15.2857; ------gawAAmG------- ; cor=0.888; Ncor=0.565; logoDP=1.681; NIcor=0.558; NsEucl=0.922; SSD=0.597; NSW=0.957; rcor=9; rNcor=24; rlogoDP=35; rNIcor=18; rNsEucl=7; rSSD=7; rNSW=7; rank_mean=15.286; match_rank=9 a 0 0 0 0 0 0 247 327 396 842 850 611 66 0 0 0 0 0 0 0 c 0 0 0 0 0 0 247 213 128 61 79 329 52 0 0 0 0 0 0 0 g 0 0 0 0 0 0 262 228 146 17 0 14 767 0 0 0 0 0 0 0 t 0 0 0 0 0 0 244 233 331 81 70 47 116 0 0 0 0 0 0 0

DOF5.6_MA0983.1_JASPAR_shift6 (DOF5.6_MA0983.1_JASPAR) 0.784 0.570 2.488 0.550 0.901 1.264 0.921 36 19 25 19 21 16 13 21.286 14
; oligos_5-7nt_m4 versus DOF5.6_MA0983.1_JASPAR; m=6/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=21.2857; ------vawAAmGt------ ; cor=0.784; Ncor=0.570; logoDP=2.488; NIcor=0.550; NsEucl=0.901; SSD=1.264; NSW=0.921; rcor=36; rNcor=19; rlogoDP=25; rNIcor=19; rNsEucl=21; rSSD=16; rNSW=13; rank_mean=21.286; match_rank=14 a 0 0 0 0 0 0 254 364 432 955 928 613 50 152 0 0 0 0 0 0 c 0 0 0 0 0 0 257 170 84 35 40 308 28 247 0 0 0 0 0 0 g 0 0 0 0 0 0 262 227 108 1 1 56 884 213 0 0 0 0 0 0 t 0 0 0 0 0 0 228 239 376 10 32 24 38 388 0 0 0 0 0 0

CDF2_M0653_1.02_CISBP_shift6 (CDF2_M0653_1.02_CISBP) 0.764 0.694 3.833 0.676 0.908 1.710 0.914 45 5 20 3 14 45 20 21.714 15
; oligos_5-7nt_m4 versus CDF2_M0653_1.02_CISBP; m=7/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=21.7143; ------maWAAAGyrh---- ; cor=0.764; Ncor=0.694; logoDP=3.833; NIcor=0.676; NsEucl=0.908; SSD=1.710; NSW=0.914; rcor=45; rNcor=5; rlogoDP=20; rNIcor=3; rNsEucl=14; rSSD=45; rNSW=20; rank_mean=21.714; match_rank=15 a 0 0 0 0 0 0 33 61 69 98 98 87 2 5 33 30 0 0 0 0 c 0 0 0 0 0 0 29 9 2 1 1 3 1 29 8 28 0 0 0 0 g 0 0 0 0 0 0 23 15 4 0 0 8 97 16 39 16 0 0 0 0 t 0 0 0 0 0 0 15 15 25 1 1 2 0 50 20 26 0 0 0 0

e_gw1.149.93.1_M0658_1.02_CISBP_shift6 (e_gw1.149.93.1_M0658_1.02_CISBP) 0.801 0.583 1.040 0.580 0.898 1.339 0.916 21 17 44 13 26 20 15 22.286 16
; oligos_5-7nt_m4 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=8/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=22.2857; ------vrwaAmGy------ ; cor=0.801; Ncor=0.583; logoDP=1.040; NIcor=0.580; NsEucl=0.898; SSD=1.339; NSW=0.916; rcor=21; rNcor=17; rlogoDP=44; rNIcor=13; rNsEucl=26; rSSD=20; rNSW=15; rank_mean=22.286; match_rank=16 a 0 0 0 0 0 0 25 33 40 65 70 57 8 17 0 0 0 0 0 0 c 0 0 0 0 0 0 26 20 14 13 10 25 8 26 0 0 0 0 0 0 g 0 0 0 0 0 0 26 25 16 8 5 0 76 22 0 0 0 0 0 0 t 0 0 0 0 0 0 23 22 30 14 15 18 8 35 0 0 0 0 0 0

DOF5.6_M0657_1.02_CISBP_shift6 (DOF5.6_M0657_1.02_CISBP) 0.781 0.568 2.474 0.548 0.900 1.279 0.920 38 22 26 20 23 17 14 22.857 17
; oligos_5-7nt_m4 versus DOF5.6_M0657_1.02_CISBP; m=9/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=22.8571; ------vawAAmGy------ ; cor=0.781; Ncor=0.568; logoDP=2.474; NIcor=0.548; NsEucl=0.900; SSD=1.279; NSW=0.920; rcor=38; rNcor=22; rlogoDP=26; rNIcor=20; rNsEucl=23; rSSD=17; rNSW=14; rank_mean=22.857; match_rank=17 a 0 0 0 0 0 0 25 36 43 95 93 61 5 15 0 0 0 0 0 0 c 0 0 0 0 0 0 26 17 8 3 4 31 3 25 0 0 0 0 0 0 g 0 0 0 0 0 0 26 23 11 0 0 6 88 21 0 0 0 0 0 0 t 0 0 0 0 0 0 23 24 38 2 3 2 4 39 0 0 0 0 0 0

CDF2_MA0973.1_JASPAR_shift6 (CDF2_MA0973.1_JASPAR) 0.762 0.693 3.818 0.676 0.907 1.725 0.914 46 6 21 4 16 46 24 23.286 18
; oligos_5-7nt_m4 versus CDF2_MA0973.1_JASPAR; m=10/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=23.2857; ------maWAAAGyrh---- ; cor=0.762; Ncor=0.693; logoDP=3.818; NIcor=0.676; NsEucl=0.907; SSD=1.725; NSW=0.914; rcor=46; rNcor=6; rlogoDP=21; rNIcor=4; rNsEucl=16; rSSD=46; rNSW=24; rank_mean=23.286; match_rank=18 a 0 0 0 0 0 0 334 608 693 980 979 868 17 53 328 299 0 0 0 0 c 0 0 0 0 0 0 284 92 16 10 10 29 7 295 77 282 0 0 0 0 g 0 0 0 0 0 0 235 150 41 4 2 81 969 154 395 155 0 0 0 0 t 0 0 0 0 0 0 148 150 250 5 9 22 6 498 200 264 0 0 0 0

e_gw1.170.52.1_M0659_1.02_CISBP_shift6 (e_gw1.170.52.1_M0659_1.02_CISBP) 0.751 0.683 2.148 0.656 0.908 1.695 0.915 51 8 29 6 12 43 16 23.571 19
; oligos_5-7nt_m4 versus e_gw1.170.52.1_M0659_1.02_CISBP; m=11/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=23.5714; ------srwAAAGydr---- ; cor=0.751; Ncor=0.683; logoDP=2.148; NIcor=0.656; NsEucl=0.908; SSD=1.695; NSW=0.915; rcor=51; rNcor=8; rlogoDP=29; rNIcor=6; rNsEucl=12; rSSD=43; rNSW=16; rank_mean=23.571; match_rank=19 a 0 0 0 0 0 0 24 30 40 89 89 72 7 18 27 28 0 0 0 0 c 0 0 0 0 0 0 27 22 11 4 5 20 2 26 19 22 0 0 0 0 g 0 0 0 0 0 0 25 26 17 1 0 3 84 23 27 27 0 0 0 0 t 0 0 0 0 0 0 24 22 32 6 6 5 7 33 27 23 0 0 0 0

ATDOF2.4_M0648_1.02_CISBP_shift7 (ATDOF2.4_M0648_1.02_CISBP) 0.802 0.510 1.578 0.501 0.890 1.196 0.915 20 27 37 23 31 12 19 24.143 20
; oligos_5-7nt_m4 versus ATDOF2.4_M0648_1.02_CISBP; m=12/30; ncol2=7; w=7; offset=1; strand=D; shift=7; score=24.1429; -------awAAaGt------ ; cor=0.802; Ncor=0.510; logoDP=1.578; NIcor=0.501; NsEucl=0.890; SSD=1.196; NSW=0.915; rcor=20; rNcor=27; rlogoDP=37; rNIcor=23; rNsEucl=31; rSSD=12; rNSW=19; rank_mean=24.143; match_rank=20 a 0 0 0 0 0 0 0 38 43 81 81 66 9 18 0 0 0 0 0 0 c 0 0 0 0 0 0 0 17 8 7 7 24 7 24 0 0 0 0 0 0 g 0 0 0 0 0 0 0 23 13 2 0 2 76 21 0 0 0 0 0 0 t 0 0 0 0 0 0 0 22 36 10 12 8 8 37 0 0 0 0 0 0

PHYPADRAFT_140773_MA0987.1_JASPAR_shift6 (PHYPADRAFT_140773_MA0987.1_JASPAR) 0.750 0.682 2.131 0.655 0.908 1.702 0.915 52 9 30 7 13 44 18 24.714 21
; oligos_5-7nt_m4 versus PHYPADRAFT_140773_MA0987.1_JASPAR; m=13/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=24.7143; ------srwAAAGydr---- ; cor=0.750; Ncor=0.682; logoDP=2.131; NIcor=0.655; NsEucl=0.908; SSD=1.702; NSW=0.915; rcor=52; rNcor=9; rlogoDP=30; rNIcor=7; rNsEucl=13; rSSD=44; rNSW=18; rank_mean=24.714; match_rank=21 a 0 0 0 0 0 0 243 302 396 888 892 715 72 182 271 280 0 0 0 0 c 0 0 0 0 0 0 266 215 111 43 46 205 22 258 193 218 0 0 0 0 g 0 0 0 0 0 0 253 260 173 10 1 28 839 229 271 272 0 0 0 0 t 0 0 0 0 0 0 238 222 321 60 61 52 67 331 265 229 0 0 0 0

DOF2.4_MA0982.1_JASPAR_shift7 (DOF2.4_MA0982.1_JASPAR) 0.800 0.509 1.586 0.500 0.889 1.203 0.914 25 28 36 24 32 13 22 25.714 23
; oligos_5-7nt_m4 versus DOF2.4_MA0982.1_JASPAR; m=14/30; ncol2=7; w=7; offset=1; strand=D; shift=7; score=25.7143; -------awAAmGt------ ; cor=0.800; Ncor=0.509; logoDP=1.586; NIcor=0.500; NsEucl=0.889; SSD=1.203; NSW=0.914; rcor=25; rNcor=28; rlogoDP=36; rNIcor=24; rNsEucl=32; rSSD=13; rNSW=22; rank_mean=25.714; match_rank=23 a 0 0 0 0 0 0 0 381 426 807 815 658 81 177 0 0 0 0 0 0 c 0 0 0 0 0 0 0 171 90 71 66 252 73 242 0 0 0 0 0 0 g 0 0 0 0 0 0 0 233 127 18 1 16 762 210 0 0 0 0 0 0 t 0 0 0 0 0 0 0 215 356 104 118 75 84 371 0 0 0 0 0 0

fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift6 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP) 0.786 0.571 0.864 0.577 0.893 1.453 0.909 35 18 46 14 28 24 27 27.429 26
; oligos_5-7nt_m4 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=15/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=27.4286; ------sawaamGt------ ; cor=0.786; Ncor=0.571; logoDP=0.864; NIcor=0.577; NsEucl=0.893; SSD=1.453; NSW=0.909; rcor=35; rNcor=18; rlogoDP=46; rNIcor=14; rNsEucl=28; rSSD=24; rNSW=27; rank_mean=27.429; match_rank=26 a 0 0 0 0 0 0 24 36 41 62 65 55 13 17 0 0 0 0 0 0 c 0 0 0 0 0 0 26 19 14 14 12 29 9 24 0 0 0 0 0 0 g 0 0 0 0 0 0 27 23 15 8 6 0 71 21 0 0 0 0 0 0 t 0 0 0 0 0 0 23 22 30 16 17 16 7 38 0 0 0 0 0 0

PBF_M01829_TRANSFAC_rc_shift8 (PBF_M01829_TRANSFAC_rc) 0.875 0.478 0.305 -0.146 0.894 0.802 0.933 10 40 49 48 27 9 10 27.571 27
; oligos_5-7nt_m4 versus PBF_M01829_TRANSFAC_rc; m=16/30; ncol2=6; w=6; offset=2; strand=R; shift=8; score=27.5714; --------wAAAGk------ ; cor=0.875; Ncor=0.478; logoDP=0.305; NIcor=-0.146; NsEucl=0.894; SSD=0.802; NSW=0.933; rcor=10; rNcor=40; rlogoDP=49; rNIcor=48; rNsEucl=27; rSSD=9; rNSW=10; rank_mean=27.571; match_rank=27 a 0 0 0 0 0 0 0 0 7 16 16 16 0 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 1 0 0 0 16 7 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 0 0 0 0 6 0 0 0 0 0 0

PHYPADRAFT_153324_MA0989.1_JASPAR_shift6 (PHYPADRAFT_153324_MA0989.1_JASPAR) 0.755 0.618 2.346 0.593 0.899 1.663 0.908 48 14 28 11 24 40 28 27.571 28
; oligos_5-7nt_m4 versus PHYPADRAFT_153324_MA0989.1_JASPAR; m=17/30; ncol2=9; w=9; offset=0; strand=D; shift=6; score=27.5714; ------vrwAAaGyd----- ; cor=0.755; Ncor=0.618; logoDP=2.346; NIcor=0.593; NsEucl=0.899; SSD=1.663; NSW=0.908; rcor=48; rNcor=14; rlogoDP=28; rNIcor=11; rNsEucl=24; rSSD=40; rNSW=28; rank_mean=27.571; match_rank=28 a 0 0 0 0 0 0 253 334 482 861 926 672 71 139 285 0 0 0 0 0 c 0 0 0 0 0 0 264 193 71 62 36 147 27 288 158 0 0 0 0 0 g 0 0 0 0 0 0 261 255 118 13 0 52 898 195 297 0 0 0 0 0 t 0 0 0 0 0 0 222 218 330 65 38 129 5 378 260 0 0 0 0 0

e_gw1.392.16.1_M0660_1.02_CISBP_shift6 (e_gw1.392.16.1_M0660_1.02_CISBP) 0.755 0.617 2.372 0.592 0.899 1.666 0.907 49 15 27 12 25 41 29 28.286 31
; oligos_5-7nt_m4 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=18/30; ncol2=9; w=9; offset=0; strand=D; shift=6; score=28.2857; ------vrwAAaGyd----- ; cor=0.755; Ncor=0.617; logoDP=2.372; NIcor=0.592; NsEucl=0.899; SSD=1.666; NSW=0.907; rcor=49; rNcor=15; rlogoDP=27; rNIcor=12; rNsEucl=25; rSSD=41; rNSW=29; rank_mean=28.286; match_rank=31 a 0 0 0 0 0 0 25 33 48 86 93 67 7 14 28 0 0 0 0 0 c 0 0 0 0 0 0 26 19 7 6 3 15 3 28 16 0 0 0 0 0 g 0 0 0 0 0 0 26 26 12 2 0 5 90 20 30 0 0 0 0 0 t 0 0 0 0 0 0 23 22 33 6 4 13 0 38 26 0 0 0 0 0

SEP3_MA0563.1_JASPAR_rc_shift4 (SEP3_MA0563.1_JASPAR_rc) 0.786 0.544 1.330 -0.055 0.903 1.529 0.915 34 26 38 45 18 28 17 29.429 33
; oligos_5-7nt_m4 versus SEP3_MA0563.1_JASPAR_rc; m=19/30; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=29.4286; ----CCAAAAAwrGa----- ; cor=0.786; Ncor=0.544; logoDP=1.330; NIcor=-0.055; NsEucl=0.903; SSD=1.529; NSW=0.915; rcor=34; rNcor=26; rlogoDP=38; rNIcor=45; rNsEucl=18; rSSD=28; rNSW=17; rank_mean=29.429; match_rank=33 a 0 0 0 0 29 3 114 117 150 126 105 73 51 15 60 0 0 0 0 0 c 0 0 0 0 114 138 22 24 0 5 5 0 1 5 29 0 0 0 0 0 g 0 0 0 0 7 0 3 0 0 0 28 0 97 111 37 0 0 0 0 0 t 0 0 0 0 0 9 11 9 0 19 12 77 1 19 24 0 0 0 0 0

SED_M01128_TRANSFAC_rc_shift8 (SED_M01128_TRANSFAC_rc) 0.793 0.595 0.335 -0.116 0.902 1.545 0.914 29 16 48 47 19 30 21 30.000 35
; oligos_5-7nt_m4 versus SED_M01128_TRANSFAC_rc; m=20/30; ncol2=10; w=9; offset=2; strand=R; shift=8; score= 30; --------dAAAGbddrb-- ; cor=0.793; Ncor=0.595; logoDP=0.335; NIcor=-0.116; NsEucl=0.902; SSD=1.545; NSW=0.914; rcor=29; rNcor=16; rlogoDP=48; rNIcor=47; rNsEucl=19; rSSD=30; rNSW=21; rank_mean=30.000; match_rank=35 a 0 0 0 0 0 0 0 0 4 8 8 8 0 0 2 2 5 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 3 0 0 g 0 0 0 0 0 0 0 0 2 0 0 0 8 4 3 2 3 2 0 0 t 0 0 0 0 0 0 0 0 2 0 0 0 0 2 2 3 0 3 0 0

TATA_BINDING_TBP_1vtl_E_3D-footprint_shift5 (TATA_BINDING_TBP_1vtl_E_3D-footprint) 0.794 0.463 3.216 0.421 0.879 1.436 0.897 28 44 23 36 37 23 36 32.429 36
; oligos_5-7nt_m4 versus TATA_BINDING_TBP_1vtl_E_3D-footprint; m=21/30; ncol2=8; w=7; offset=-1; strand=D; shift=5; score=32.4286; -----TATAAaAG------- ; cor=0.794; Ncor=0.463; logoDP=3.216; NIcor=0.421; NsEucl=0.879; SSD=1.436; NSW=0.897; rcor=28; rNcor=44; rlogoDP=23; rNIcor=36; rNsEucl=37; rSSD=23; rNSW=36; rank_mean=32.429; match_rank=36 a 0 0 0 0 0 0 96 0 96 72 60 96 12 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 12 12 0 12 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 12 12 0 72 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 12 0 0 0 0 0 0 0 0 0

SVP_MA0555.1_JASPAR_shift0 (SVP_MA0555.1_JASPAR) 0.777 0.427 4.363 0.409 0.910 1.956 0.911 39 52 19 37 10 48 26 33.000 37
; oligos_5-7nt_m4 versus SVP_MA0555.1_JASPAR; m=22/30; ncol2=20; w=11; offset=-6; strand=D; shift=0; score= 33; mwwwCCaAAAAwGGAAAraw ; cor=0.777; Ncor=0.427; logoDP=4.363; NIcor=0.409; NsEucl=0.910; SSD=1.956; NSW=0.911; rcor=39; rNcor=52; rlogoDP=19; rNIcor=37; rNsEucl=10; rSSD=48; rNSW=26; rank_mean=33.000; match_rank=37 a 28 28 28 33 7 3 58 67 86 77 78 34 16 0 71 84 77 34 50 38 c 24 11 1 16 85 79 16 5 0 1 8 10 0 0 10 2 7 8 16 21 g 21 8 10 11 0 1 7 8 0 2 3 14 74 92 0 2 2 39 5 3 t 19 45 53 32 0 9 11 12 6 12 3 34 2 0 11 4 6 11 21 30

TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc) 0.826 0.482 0.351 -0.171 0.884 1.316 0.906 17 37 47 50 35 18 30 33.429 40
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc; m=23/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=33.4286; -----TACAAaAG------- ; cor=0.826; Ncor=0.482; logoDP=0.351; NIcor=-0.171; NsEucl=0.884; SSD=1.316; NSW=0.906; rcor=17; rNcor=37; rlogoDP=47; rNIcor=50; rNsEucl=35; rSSD=18; rNSW=30; rank_mean=33.429; match_rank=40 a 0 0 0 0 0 0 96 0 96 96 61 96 8 0 0 0 0 0 0 0 c 0 0 0 0 0 10 0 88 0 0 8 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 8 0 0 0 0 17 0 72 0 0 0 0 0 0 0 t 0 0 0 0 0 78 0 8 0 0 10 0 8 0 0 0 0 0 0 0

_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift5 (_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc) 0.792 0.462 1.166 -0.021 0.877 1.474 0.895 30 45 42 41 38 25 37 36.857 45
; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_AB_3D-footprint_rc; m=24/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=36.8571; -----TATAAaAG------- ; cor=0.792; Ncor=0.462; logoDP=1.166; NIcor=-0.021; NsEucl=0.877; SSD=1.474; NSW=0.895; rcor=30; rNcor=45; rlogoDP=42; rNIcor=41; rNsEucl=38; rSSD=25; rNSW=37; rank_mean=36.857; match_rank=45 a 0 0 0 0 0 0 96 0 96 82 57 96 13 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 13 13 0 15 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 1 13 0 68 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 13 0 0 0 0 0 0 0 0 0

TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc) 0.787 0.459 1.137 -0.013 0.877 1.481 0.894 33 48 43 40 39 26 38 38.143 46
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc; m=25/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=38.1429; -----AATAAaAG------- ; cor=0.787; Ncor=0.459; logoDP=1.137; NIcor=-0.013; NsEucl=0.877; SSD=1.481; NSW=0.894; rcor=33; rNcor=48; rlogoDP=43; rNIcor=40; rNsEucl=39; rSSD=26; rNSW=38; rank_mean=38.143; match_rank=46 a 0 0 0 0 0 96 96 0 96 74 53 96 10 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 10 10 0 12 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 12 21 0 74 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 96 0 0 12 0 0 0 0 0 0 0 0 0

_TATA_BINDING_TBP_1vol_B_3D-footprint_rc_shift5 (_TATA_BINDING_TBP_1vol_B_3D-footprint_rc) 0.787 0.459 1.174 -0.024 0.876 1.495 0.893 32 47 41 42 40 27 39 38.286 47
; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_B_3D-footprint_rc; m=26/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=38.2857; -----TATAAaAG------- ; cor=0.787; Ncor=0.459; logoDP=1.174; NIcor=-0.024; NsEucl=0.876; SSD=1.495; NSW=0.893; rcor=32; rNcor=47; rlogoDP=41; rNIcor=42; rNsEucl=40; rSSD=27; rNSW=39; rank_mean=38.286; match_rank=47 a 0 0 0 0 0 0 96 0 96 82 54 96 13 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 13 13 0 13 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 13 0 68 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 1 16 0 2 0 0 0 0 0 0 0

AG_M01133_TRANSFAC_rc_shift2 (AG_M01133_TRANSFAC_rc) 0.757 0.490 0.922 -0.108 0.907 2.078 0.906 47 35 45 46 15 49 32 38.429 48
; oligos_5-7nt_m4 versus AG_M01133_TRANSFAC_rc; m=27/30; ncol2=17; w=11; offset=-4; strand=R; shift=2; score=38.4286; --TwcCwAAAAwGGwAAwt- ; cor=0.757; Ncor=0.490; logoDP=0.922; NIcor=-0.108; NsEucl=0.907; SSD=2.078; NSW=0.906; rcor=47; rNcor=35; rlogoDP=45; rNIcor=46; rNsEucl=15; rSSD=49; rNSW=32; rank_mean=38.429; match_rank=48 a 0 0 1 6 3 0 8 11 13 10 10 6 0 0 6 10 9 6 2 0 c 0 0 1 0 7 11 1 0 0 0 0 0 0 0 2 0 1 0 2 0 g 0 0 0 2 1 0 0 0 0 0 0 0 12 13 1 1 1 3 2 0 t 0 0 11 5 2 2 4 2 0 3 3 7 1 0 4 2 2 4 7 0

TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc) 0.771 0.450 2.005 0.099 0.873 1.587 0.887 43 51 32 38 44 35 43 40.857 49
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=28/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=40.8571; -----TTTAAAAG------- ; cor=0.771; Ncor=0.450; logoDP=2.005; NIcor=0.099; NsEucl=0.873; SSD=1.587; NSW=0.887; rcor=43; rNcor=51; rlogoDP=32; rNIcor=38; rNsEucl=44; rSSD=35; rNSW=43; rank_mean=40.857; match_rank=49 a 0 0 0 0 0 0 0 9 96 78 72 96 8 0 0 0 0 0 0 0 c 0 0 0 0 0 8 0 0 0 8 8 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 1 0 0 0 8 8 0 69 0 0 0 0 0 0 0 t 0 0 0 0 0 87 96 87 0 2 8 0 11 0 0 0 0 0 0 0

TATA_BINDING__1vto_B_3D-footprint_rc_shift5 (TATA_BINDING__1vto_B_3D-footprint_rc) 0.776 0.453 1.174 -0.029 0.872 1.609 0.885 40 49 39 44 45 36 44 42.429 50
; oligos_5-7nt_m4 versus TATA_BINDING__1vto_B_3D-footprint_rc; m=29/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=42.4286; -----TATAAaAg------- ; cor=0.776; Ncor=0.453; logoDP=1.174; NIcor=-0.029; NsEucl=0.872; SSD=1.609; NSW=0.885; rcor=40; rNcor=49; rlogoDP=39; rNIcor=44; rNsEucl=45; rSSD=36; rNSW=44; rank_mean=42.429; match_rank=50 a 0 0 0 0 0 0 96 0 96 96 57 96 13 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 13 0 16 0 0 0 0 0 0 0

TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc) 0.771 0.450 1.174 -0.028 0.871 1.633 0.883 42 50 40 43 47 37 46 43.571 51
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc; m=30/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=43.5714; -----TATAAaAg------- ; cor=0.771; Ncor=0.450; logoDP=1.174; NIcor=-0.028; NsEucl=0.871; SSD=1.633; NSW=0.883; rcor=42; rNcor=50; rlogoDP=40; rNIcor=43; rNsEucl=47; rSSD=37; rNSW=46; rank_mean=43.571; match_rank=51 a 0 0 0 0 0 0 96 0 96 96 54 96 16 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 16 0 13 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m4_shift6 (oligos_5-7nt_m4)																	; oligos_5-7nt_m4; m=0 (reference); ncol1=11; shift=6; ncol=20; ------aaAAAAGGAkr--- ; Alignment reference a 0 0 0 0 0 0 47 38 109 101 105 108 3 4 112 24 31 0 0 0 c 0 0 0 0 0 0 29 29 5 9 6 4 6 1 1 26 29 0 0 0 g 0 0 0 0 0 0 23 25 5 7 6 4 112 113 4 38 32 0 0 0 t 0 0 0 0 0 0 23 30 3 5 5 6 1 4 5 34 30 0 0 0
AY750993_VRN1_EEADannot_shift4 (AY750993_VRN1_EEADannot)	0.926	0.570	3.318	0.572	0.939	0.469	0.971	6	20	22	15	3	3	3	10.286	4	; oligos_5-7nt_m4 versus AY750993_VRN1_EEADannot; m=1/30; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=10.2857; ----CCarAAAwGG------ ; cor=0.926; Ncor=0.570; logoDP=3.318; NIcor=0.572; NsEucl=0.939; SSD=0.469; NSW=0.971; rcor=6; rNcor=20; rlogoDP=22; rNIcor=15; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=10.286; match_rank=4 a 0 0 0 0 19 9 57 56 95 84 79 57 24 15 0 0 0 0 0 0 c 0 0 0 0 72 71 17 7 1 1 7 3 0 0 0 0 0 0 0 0 g 0 0 0 0 7 8 14 31 4 3 7 9 76 85 0 0 0 0 0 0 t 0 0 0 0 2 12 12 6 0 12 7 31 0 0 0 0 0 0 0 0
Dof_M01136_TRANSFAC_shift5 (Dof_M01136_TRANSFAC)	0.826	0.689	4.717	0.661	0.919	1.324	0.934	16	7	15	5	9	19	9	11.429	5	; oligos_5-7nt_m4 versus Dof_M01136_TRANSFAC; m=2/30; ncol2=11; w=10; offset=-1; strand=D; shift=5; score=11.4286; -----amaaAAAGwar---- ; cor=0.826; Ncor=0.689; logoDP=4.717; NIcor=0.661; NsEucl=0.919; SSD=1.324; NSW=0.934; rcor=16; rNcor=7; rlogoDP=15; rNIcor=5; rNsEucl=9; rSSD=19; rNSW=9; rank_mean=11.429; match_rank=5 a 0 0 0 0 0 4 3 6 6 9 9 9 0 3 5 3 0 0 0 0 c 0 0 0 0 0 2 3 0 0 0 0 0 0 1 1 2 0 0 0 0 g 0 0 0 0 0 2 1 2 2 0 0 0 9 2 2 3 0 0 0 0 t 0 0 0 0 0 1 2 1 1 0 0 0 0 3 1 1 0 0 0 0
PBF_M01130_TRANSFAC_shift8 (PBF_M01130_TRANSFAC)	0.929	0.507	4.784	0.489	0.919	0.471	0.961	4	30	14	26	8	4	4	12.857	7	; oligos_5-7nt_m4 versus PBF_M01130_TRANSFAC; m=3/30; ncol2=6; w=6; offset=2; strand=D; shift=8; score=12.8571; --------wAAAGg------ ; cor=0.929; Ncor=0.507; logoDP=4.784; NIcor=0.489; NsEucl=0.919; SSD=0.471; NSW=0.961; rcor=4; rNcor=30; rlogoDP=14; rNIcor=26; rNsEucl=8; rSSD=4; rNSW=4; rank_mean=12.857; match_rank=7 a 0 0 0 0 0 0 0 0 6 11 11 11 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 1 0 0 0 11 7 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0 0 0
TMO6_M0654_1.02_CISBP_shift6 (TMO6_M0654_1.02_CISBP)	0.890	0.567	1.684	0.560	0.923	0.585	0.958	8	23	34	17	6	6	6	14.286	8	; oligos_5-7nt_m4 versus TMO6_M0654_1.02_CISBP; m=4/30; ncol2=7; w=7; offset=0; strand=D; shift=6; score=14.2857; ------vawAAmG------- ; cor=0.890; Ncor=0.567; logoDP=1.684; NIcor=0.560; NsEucl=0.923; SSD=0.585; NSW=0.958; rcor=8; rNcor=23; rlogoDP=34; rNIcor=17; rNsEucl=6; rSSD=6; rNSW=6; rank_mean=14.286; match_rank=8 a 0 0 0 0 0 0 25 33 40 84 85 61 7 0 0 0 0 0 0 0 c 0 0 0 0 0 0 25 21 13 6 8 33 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 26 23 15 2 0 1 77 0 0 0 0 0 0 0 t 0 0 0 0 0 0 24 23 32 8 7 5 11 0 0 0 0 0 0 0
DOF5.3_MA1071.1_JASPAR_shift6 (DOF5.3_MA1071.1_JASPAR)	0.888	0.565	1.681	0.558	0.922	0.597	0.957	9	24	35	18	7	7	7	15.286	9	; oligos_5-7nt_m4 versus DOF5.3_MA1071.1_JASPAR; m=5/30; ncol2=7; w=7; offset=0; strand=D; shift=6; score=15.2857; ------gawAAmG------- ; cor=0.888; Ncor=0.565; logoDP=1.681; NIcor=0.558; NsEucl=0.922; SSD=0.597; NSW=0.957; rcor=9; rNcor=24; rlogoDP=35; rNIcor=18; rNsEucl=7; rSSD=7; rNSW=7; rank_mean=15.286; match_rank=9 a 0 0 0 0 0 0 247 327 396 842 850 611 66 0 0 0 0 0 0 0 c 0 0 0 0 0 0 247 213 128 61 79 329 52 0 0 0 0 0 0 0 g 0 0 0 0 0 0 262 228 146 17 0 14 767 0 0 0 0 0 0 0 t 0 0 0 0 0 0 244 233 331 81 70 47 116 0 0 0 0 0 0 0
DOF5.6_MA0983.1_JASPAR_shift6 (DOF5.6_MA0983.1_JASPAR)	0.784	0.570	2.488	0.550	0.901	1.264	0.921	36	19	25	19	21	16	13	21.286	14	; oligos_5-7nt_m4 versus DOF5.6_MA0983.1_JASPAR; m=6/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=21.2857; ------vawAAmGt------ ; cor=0.784; Ncor=0.570; logoDP=2.488; NIcor=0.550; NsEucl=0.901; SSD=1.264; NSW=0.921; rcor=36; rNcor=19; rlogoDP=25; rNIcor=19; rNsEucl=21; rSSD=16; rNSW=13; rank_mean=21.286; match_rank=14 a 0 0 0 0 0 0 254 364 432 955 928 613 50 152 0 0 0 0 0 0 c 0 0 0 0 0 0 257 170 84 35 40 308 28 247 0 0 0 0 0 0 g 0 0 0 0 0 0 262 227 108 1 1 56 884 213 0 0 0 0 0 0 t 0 0 0 0 0 0 228 239 376 10 32 24 38 388 0 0 0 0 0 0
CDF2_M0653_1.02_CISBP_shift6 (CDF2_M0653_1.02_CISBP)	0.764	0.694	3.833	0.676	0.908	1.710	0.914	45	5	20	3	14	45	20	21.714	15	; oligos_5-7nt_m4 versus CDF2_M0653_1.02_CISBP; m=7/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=21.7143; ------maWAAAGyrh---- ; cor=0.764; Ncor=0.694; logoDP=3.833; NIcor=0.676; NsEucl=0.908; SSD=1.710; NSW=0.914; rcor=45; rNcor=5; rlogoDP=20; rNIcor=3; rNsEucl=14; rSSD=45; rNSW=20; rank_mean=21.714; match_rank=15 a 0 0 0 0 0 0 33 61 69 98 98 87 2 5 33 30 0 0 0 0 c 0 0 0 0 0 0 29 9 2 1 1 3 1 29 8 28 0 0 0 0 g 0 0 0 0 0 0 23 15 4 0 0 8 97 16 39 16 0 0 0 0 t 0 0 0 0 0 0 15 15 25 1 1 2 0 50 20 26 0 0 0 0
e_gw1.149.93.1_M0658_1.02_CISBP_shift6 (e_gw1.149.93.1_M0658_1.02_CISBP)	0.801	0.583	1.040	0.580	0.898	1.339	0.916	21	17	44	13	26	20	15	22.286	16	; oligos_5-7nt_m4 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=8/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=22.2857; ------vrwaAmGy------ ; cor=0.801; Ncor=0.583; logoDP=1.040; NIcor=0.580; NsEucl=0.898; SSD=1.339; NSW=0.916; rcor=21; rNcor=17; rlogoDP=44; rNIcor=13; rNsEucl=26; rSSD=20; rNSW=15; rank_mean=22.286; match_rank=16 a 0 0 0 0 0 0 25 33 40 65 70 57 8 17 0 0 0 0 0 0 c 0 0 0 0 0 0 26 20 14 13 10 25 8 26 0 0 0 0 0 0 g 0 0 0 0 0 0 26 25 16 8 5 0 76 22 0 0 0 0 0 0 t 0 0 0 0 0 0 23 22 30 14 15 18 8 35 0 0 0 0 0 0
DOF5.6_M0657_1.02_CISBP_shift6 (DOF5.6_M0657_1.02_CISBP)	0.781	0.568	2.474	0.548	0.900	1.279	0.920	38	22	26	20	23	17	14	22.857	17	; oligos_5-7nt_m4 versus DOF5.6_M0657_1.02_CISBP; m=9/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=22.8571; ------vawAAmGy------ ; cor=0.781; Ncor=0.568; logoDP=2.474; NIcor=0.548; NsEucl=0.900; SSD=1.279; NSW=0.920; rcor=38; rNcor=22; rlogoDP=26; rNIcor=20; rNsEucl=23; rSSD=17; rNSW=14; rank_mean=22.857; match_rank=17 a 0 0 0 0 0 0 25 36 43 95 93 61 5 15 0 0 0 0 0 0 c 0 0 0 0 0 0 26 17 8 3 4 31 3 25 0 0 0 0 0 0 g 0 0 0 0 0 0 26 23 11 0 0 6 88 21 0 0 0 0 0 0 t 0 0 0 0 0 0 23 24 38 2 3 2 4 39 0 0 0 0 0 0
CDF2_MA0973.1_JASPAR_shift6 (CDF2_MA0973.1_JASPAR)	0.762	0.693	3.818	0.676	0.907	1.725	0.914	46	6	21	4	16	46	24	23.286	18	; oligos_5-7nt_m4 versus CDF2_MA0973.1_JASPAR; m=10/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=23.2857; ------maWAAAGyrh---- ; cor=0.762; Ncor=0.693; logoDP=3.818; NIcor=0.676; NsEucl=0.907; SSD=1.725; NSW=0.914; rcor=46; rNcor=6; rlogoDP=21; rNIcor=4; rNsEucl=16; rSSD=46; rNSW=24; rank_mean=23.286; match_rank=18 a 0 0 0 0 0 0 334 608 693 980 979 868 17 53 328 299 0 0 0 0 c 0 0 0 0 0 0 284 92 16 10 10 29 7 295 77 282 0 0 0 0 g 0 0 0 0 0 0 235 150 41 4 2 81 969 154 395 155 0 0 0 0 t 0 0 0 0 0 0 148 150 250 5 9 22 6 498 200 264 0 0 0 0
e_gw1.170.52.1_M0659_1.02_CISBP_shift6 (e_gw1.170.52.1_M0659_1.02_CISBP)	0.751	0.683	2.148	0.656	0.908	1.695	0.915	51	8	29	6	12	43	16	23.571	19	; oligos_5-7nt_m4 versus e_gw1.170.52.1_M0659_1.02_CISBP; m=11/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=23.5714; ------srwAAAGydr---- ; cor=0.751; Ncor=0.683; logoDP=2.148; NIcor=0.656; NsEucl=0.908; SSD=1.695; NSW=0.915; rcor=51; rNcor=8; rlogoDP=29; rNIcor=6; rNsEucl=12; rSSD=43; rNSW=16; rank_mean=23.571; match_rank=19 a 0 0 0 0 0 0 24 30 40 89 89 72 7 18 27 28 0 0 0 0 c 0 0 0 0 0 0 27 22 11 4 5 20 2 26 19 22 0 0 0 0 g 0 0 0 0 0 0 25 26 17 1 0 3 84 23 27 27 0 0 0 0 t 0 0 0 0 0 0 24 22 32 6 6 5 7 33 27 23 0 0 0 0
ATDOF2.4_M0648_1.02_CISBP_shift7 (ATDOF2.4_M0648_1.02_CISBP)	0.802	0.510	1.578	0.501	0.890	1.196	0.915	20	27	37	23	31	12	19	24.143	20	; oligos_5-7nt_m4 versus ATDOF2.4_M0648_1.02_CISBP; m=12/30; ncol2=7; w=7; offset=1; strand=D; shift=7; score=24.1429; -------awAAaGt------ ; cor=0.802; Ncor=0.510; logoDP=1.578; NIcor=0.501; NsEucl=0.890; SSD=1.196; NSW=0.915; rcor=20; rNcor=27; rlogoDP=37; rNIcor=23; rNsEucl=31; rSSD=12; rNSW=19; rank_mean=24.143; match_rank=20 a 0 0 0 0 0 0 0 38 43 81 81 66 9 18 0 0 0 0 0 0 c 0 0 0 0 0 0 0 17 8 7 7 24 7 24 0 0 0 0 0 0 g 0 0 0 0 0 0 0 23 13 2 0 2 76 21 0 0 0 0 0 0 t 0 0 0 0 0 0 0 22 36 10 12 8 8 37 0 0 0 0 0 0
PHYPADRAFT_140773_MA0987.1_JASPAR_shift6 (PHYPADRAFT_140773_MA0987.1_JASPAR)	0.750	0.682	2.131	0.655	0.908	1.702	0.915	52	9	30	7	13	44	18	24.714	21	; oligos_5-7nt_m4 versus PHYPADRAFT_140773_MA0987.1_JASPAR; m=13/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=24.7143; ------srwAAAGydr---- ; cor=0.750; Ncor=0.682; logoDP=2.131; NIcor=0.655; NsEucl=0.908; SSD=1.702; NSW=0.915; rcor=52; rNcor=9; rlogoDP=30; rNIcor=7; rNsEucl=13; rSSD=44; rNSW=18; rank_mean=24.714; match_rank=21 a 0 0 0 0 0 0 243 302 396 888 892 715 72 182 271 280 0 0 0 0 c 0 0 0 0 0 0 266 215 111 43 46 205 22 258 193 218 0 0 0 0 g 0 0 0 0 0 0 253 260 173 10 1 28 839 229 271 272 0 0 0 0 t 0 0 0 0 0 0 238 222 321 60 61 52 67 331 265 229 0 0 0 0
DOF2.4_MA0982.1_JASPAR_shift7 (DOF2.4_MA0982.1_JASPAR)	0.800	0.509	1.586	0.500	0.889	1.203	0.914	25	28	36	24	32	13	22	25.714	23	; oligos_5-7nt_m4 versus DOF2.4_MA0982.1_JASPAR; m=14/30; ncol2=7; w=7; offset=1; strand=D; shift=7; score=25.7143; -------awAAmGt------ ; cor=0.800; Ncor=0.509; logoDP=1.586; NIcor=0.500; NsEucl=0.889; SSD=1.203; NSW=0.914; rcor=25; rNcor=28; rlogoDP=36; rNIcor=24; rNsEucl=32; rSSD=13; rNSW=22; rank_mean=25.714; match_rank=23 a 0 0 0 0 0 0 0 381 426 807 815 658 81 177 0 0 0 0 0 0 c 0 0 0 0 0 0 0 171 90 71 66 252 73 242 0 0 0 0 0 0 g 0 0 0 0 0 0 0 233 127 18 1 16 762 210 0 0 0 0 0 0 t 0 0 0 0 0 0 0 215 356 104 118 75 84 371 0 0 0 0 0 0
fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift6 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP)	0.786	0.571	0.864	0.577	0.893	1.453	0.909	35	18	46	14	28	24	27	27.429	26	; oligos_5-7nt_m4 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=15/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=27.4286; ------sawaamGt------ ; cor=0.786; Ncor=0.571; logoDP=0.864; NIcor=0.577; NsEucl=0.893; SSD=1.453; NSW=0.909; rcor=35; rNcor=18; rlogoDP=46; rNIcor=14; rNsEucl=28; rSSD=24; rNSW=27; rank_mean=27.429; match_rank=26 a 0 0 0 0 0 0 24 36 41 62 65 55 13 17 0 0 0 0 0 0 c 0 0 0 0 0 0 26 19 14 14 12 29 9 24 0 0 0 0 0 0 g 0 0 0 0 0 0 27 23 15 8 6 0 71 21 0 0 0 0 0 0 t 0 0 0 0 0 0 23 22 30 16 17 16 7 38 0 0 0 0 0 0
PBF_M01829_TRANSFAC_rc_shift8 (PBF_M01829_TRANSFAC_rc)	0.875	0.478	0.305	-0.146	0.894	0.802	0.933	10	40	49	48	27	9	10	27.571	27	; oligos_5-7nt_m4 versus PBF_M01829_TRANSFAC_rc; m=16/30; ncol2=6; w=6; offset=2; strand=R; shift=8; score=27.5714; --------wAAAGk------ ; cor=0.875; Ncor=0.478; logoDP=0.305; NIcor=-0.146; NsEucl=0.894; SSD=0.802; NSW=0.933; rcor=10; rNcor=40; rlogoDP=49; rNIcor=48; rNsEucl=27; rSSD=9; rNSW=10; rank_mean=27.571; match_rank=27 a 0 0 0 0 0 0 0 0 7 16 16 16 0 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 1 0 0 0 16 7 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 0 0 0 0 6 0 0 0 0 0 0
PHYPADRAFT_153324_MA0989.1_JASPAR_shift6 (PHYPADRAFT_153324_MA0989.1_JASPAR)	0.755	0.618	2.346	0.593	0.899	1.663	0.908	48	14	28	11	24	40	28	27.571	28	; oligos_5-7nt_m4 versus PHYPADRAFT_153324_MA0989.1_JASPAR; m=17/30; ncol2=9; w=9; offset=0; strand=D; shift=6; score=27.5714; ------vrwAAaGyd----- ; cor=0.755; Ncor=0.618; logoDP=2.346; NIcor=0.593; NsEucl=0.899; SSD=1.663; NSW=0.908; rcor=48; rNcor=14; rlogoDP=28; rNIcor=11; rNsEucl=24; rSSD=40; rNSW=28; rank_mean=27.571; match_rank=28 a 0 0 0 0 0 0 253 334 482 861 926 672 71 139 285 0 0 0 0 0 c 0 0 0 0 0 0 264 193 71 62 36 147 27 288 158 0 0 0 0 0 g 0 0 0 0 0 0 261 255 118 13 0 52 898 195 297 0 0 0 0 0 t 0 0 0 0 0 0 222 218 330 65 38 129 5 378 260 0 0 0 0 0
e_gw1.392.16.1_M0660_1.02_CISBP_shift6 (e_gw1.392.16.1_M0660_1.02_CISBP)	0.755	0.617	2.372	0.592	0.899	1.666	0.907	49	15	27	12	25	41	29	28.286	31	; oligos_5-7nt_m4 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=18/30; ncol2=9; w=9; offset=0; strand=D; shift=6; score=28.2857; ------vrwAAaGyd----- ; cor=0.755; Ncor=0.617; logoDP=2.372; NIcor=0.592; NsEucl=0.899; SSD=1.666; NSW=0.907; rcor=49; rNcor=15; rlogoDP=27; rNIcor=12; rNsEucl=25; rSSD=41; rNSW=29; rank_mean=28.286; match_rank=31 a 0 0 0 0 0 0 25 33 48 86 93 67 7 14 28 0 0 0 0 0 c 0 0 0 0 0 0 26 19 7 6 3 15 3 28 16 0 0 0 0 0 g 0 0 0 0 0 0 26 26 12 2 0 5 90 20 30 0 0 0 0 0 t 0 0 0 0 0 0 23 22 33 6 4 13 0 38 26 0 0 0 0 0
SEP3_MA0563.1_JASPAR_rc_shift4 (SEP3_MA0563.1_JASPAR_rc)	0.786	0.544	1.330	-0.055	0.903	1.529	0.915	34	26	38	45	18	28	17	29.429	33	; oligos_5-7nt_m4 versus SEP3_MA0563.1_JASPAR_rc; m=19/30; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=29.4286; ----CCAAAAAwrGa----- ; cor=0.786; Ncor=0.544; logoDP=1.330; NIcor=-0.055; NsEucl=0.903; SSD=1.529; NSW=0.915; rcor=34; rNcor=26; rlogoDP=38; rNIcor=45; rNsEucl=18; rSSD=28; rNSW=17; rank_mean=29.429; match_rank=33 a 0 0 0 0 29 3 114 117 150 126 105 73 51 15 60 0 0 0 0 0 c 0 0 0 0 114 138 22 24 0 5 5 0 1 5 29 0 0 0 0 0 g 0 0 0 0 7 0 3 0 0 0 28 0 97 111 37 0 0 0 0 0 t 0 0 0 0 0 9 11 9 0 19 12 77 1 19 24 0 0 0 0 0
SED_M01128_TRANSFAC_rc_shift8 (SED_M01128_TRANSFAC_rc)	0.793	0.595	0.335	-0.116	0.902	1.545	0.914	29	16	48	47	19	30	21	30.000	35	; oligos_5-7nt_m4 versus SED_M01128_TRANSFAC_rc; m=20/30; ncol2=10; w=9; offset=2; strand=R; shift=8; score= 30; --------dAAAGbddrb-- ; cor=0.793; Ncor=0.595; logoDP=0.335; NIcor=-0.116; NsEucl=0.902; SSD=1.545; NSW=0.914; rcor=29; rNcor=16; rlogoDP=48; rNIcor=47; rNsEucl=19; rSSD=30; rNSW=21; rank_mean=30.000; match_rank=35 a 0 0 0 0 0 0 0 0 4 8 8 8 0 0 2 2 5 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 3 0 0 g 0 0 0 0 0 0 0 0 2 0 0 0 8 4 3 2 3 2 0 0 t 0 0 0 0 0 0 0 0 2 0 0 0 0 2 2 3 0 3 0 0
TATA_BINDING_TBP_1vtl_E_3D-footprint_shift5 (TATA_BINDING_TBP_1vtl_E_3D-footprint)	0.794	0.463	3.216	0.421	0.879	1.436	0.897	28	44	23	36	37	23	36	32.429	36	; oligos_5-7nt_m4 versus TATA_BINDING_TBP_1vtl_E_3D-footprint; m=21/30; ncol2=8; w=7; offset=-1; strand=D; shift=5; score=32.4286; -----TATAAaAG------- ; cor=0.794; Ncor=0.463; logoDP=3.216; NIcor=0.421; NsEucl=0.879; SSD=1.436; NSW=0.897; rcor=28; rNcor=44; rlogoDP=23; rNIcor=36; rNsEucl=37; rSSD=23; rNSW=36; rank_mean=32.429; match_rank=36 a 0 0 0 0 0 0 96 0 96 72 60 96 12 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 12 12 0 12 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 12 12 0 72 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 12 0 0 0 0 0 0 0 0 0
SVP_MA0555.1_JASPAR_shift0 (SVP_MA0555.1_JASPAR)	0.777	0.427	4.363	0.409	0.910	1.956	0.911	39	52	19	37	10	48	26	33.000	37	; oligos_5-7nt_m4 versus SVP_MA0555.1_JASPAR; m=22/30; ncol2=20; w=11; offset=-6; strand=D; shift=0; score= 33; mwwwCCaAAAAwGGAAAraw ; cor=0.777; Ncor=0.427; logoDP=4.363; NIcor=0.409; NsEucl=0.910; SSD=1.956; NSW=0.911; rcor=39; rNcor=52; rlogoDP=19; rNIcor=37; rNsEucl=10; rSSD=48; rNSW=26; rank_mean=33.000; match_rank=37 a 28 28 28 33 7 3 58 67 86 77 78 34 16 0 71 84 77 34 50 38 c 24 11 1 16 85 79 16 5 0 1 8 10 0 0 10 2 7 8 16 21 g 21 8 10 11 0 1 7 8 0 2 3 14 74 92 0 2 2 39 5 3 t 19 45 53 32 0 9 11 12 6 12 3 34 2 0 11 4 6 11 21 30
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc)	0.826	0.482	0.351	-0.171	0.884	1.316	0.906	17	37	47	50	35	18	30	33.429	40	; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc; m=23/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=33.4286; -----TACAAaAG------- ; cor=0.826; Ncor=0.482; logoDP=0.351; NIcor=-0.171; NsEucl=0.884; SSD=1.316; NSW=0.906; rcor=17; rNcor=37; rlogoDP=47; rNIcor=50; rNsEucl=35; rSSD=18; rNSW=30; rank_mean=33.429; match_rank=40 a 0 0 0 0 0 0 96 0 96 96 61 96 8 0 0 0 0 0 0 0 c 0 0 0 0 0 10 0 88 0 0 8 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 8 0 0 0 0 17 0 72 0 0 0 0 0 0 0 t 0 0 0 0 0 78 0 8 0 0 10 0 8 0 0 0 0 0 0 0
_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift5 (_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc)	0.792	0.462	1.166	-0.021	0.877	1.474	0.895	30	45	42	41	38	25	37	36.857	45	; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_AB_3D-footprint_rc; m=24/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=36.8571; -----TATAAaAG------- ; cor=0.792; Ncor=0.462; logoDP=1.166; NIcor=-0.021; NsEucl=0.877; SSD=1.474; NSW=0.895; rcor=30; rNcor=45; rlogoDP=42; rNIcor=41; rNsEucl=38; rSSD=25; rNSW=37; rank_mean=36.857; match_rank=45 a 0 0 0 0 0 0 96 0 96 82 57 96 13 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 13 13 0 15 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 1 13 0 68 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 13 0 0 0 0 0 0 0 0 0
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc)	0.787	0.459	1.137	-0.013	0.877	1.481	0.894	33	48	43	40	39	26	38	38.143	46	; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc; m=25/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=38.1429; -----AATAAaAG------- ; cor=0.787; Ncor=0.459; logoDP=1.137; NIcor=-0.013; NsEucl=0.877; SSD=1.481; NSW=0.894; rcor=33; rNcor=48; rlogoDP=43; rNIcor=40; rNsEucl=39; rSSD=26; rNSW=38; rank_mean=38.143; match_rank=46 a 0 0 0 0 0 96 96 0 96 74 53 96 10 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 10 10 0 12 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 12 21 0 74 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 96 0 0 12 0 0 0 0 0 0 0 0 0
_TATA_BINDING_TBP_1vol_B_3D-footprint_rc_shift5 (_TATA_BINDING_TBP_1vol_B_3D-footprint_rc)	0.787	0.459	1.174	-0.024	0.876	1.495	0.893	32	47	41	42	40	27	39	38.286	47	; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_B_3D-footprint_rc; m=26/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=38.2857; -----TATAAaAG------- ; cor=0.787; Ncor=0.459; logoDP=1.174; NIcor=-0.024; NsEucl=0.876; SSD=1.495; NSW=0.893; rcor=32; rNcor=47; rlogoDP=41; rNIcor=42; rNsEucl=40; rSSD=27; rNSW=39; rank_mean=38.286; match_rank=47 a 0 0 0 0 0 0 96 0 96 82 54 96 13 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 13 13 0 13 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 13 0 68 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 1 16 0 2 0 0 0 0 0 0 0
AG_M01133_TRANSFAC_rc_shift2 (AG_M01133_TRANSFAC_rc)	0.757	0.490	0.922	-0.108	0.907	2.078	0.906	47	35	45	46	15	49	32	38.429	48	; oligos_5-7nt_m4 versus AG_M01133_TRANSFAC_rc; m=27/30; ncol2=17; w=11; offset=-4; strand=R; shift=2; score=38.4286; --TwcCwAAAAwGGwAAwt- ; cor=0.757; Ncor=0.490; logoDP=0.922; NIcor=-0.108; NsEucl=0.907; SSD=2.078; NSW=0.906; rcor=47; rNcor=35; rlogoDP=45; rNIcor=46; rNsEucl=15; rSSD=49; rNSW=32; rank_mean=38.429; match_rank=48 a 0 0 1 6 3 0 8 11 13 10 10 6 0 0 6 10 9 6 2 0 c 0 0 1 0 7 11 1 0 0 0 0 0 0 0 2 0 1 0 2 0 g 0 0 0 2 1 0 0 0 0 0 0 0 12 13 1 1 1 3 2 0 t 0 0 11 5 2 2 4 2 0 3 3 7 1 0 4 2 2 4 7 0
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc)	0.771	0.450	2.005	0.099	0.873	1.587	0.887	43	51	32	38	44	35	43	40.857	49	; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=28/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=40.8571; -----TTTAAAAG------- ; cor=0.771; Ncor=0.450; logoDP=2.005; NIcor=0.099; NsEucl=0.873; SSD=1.587; NSW=0.887; rcor=43; rNcor=51; rlogoDP=32; rNIcor=38; rNsEucl=44; rSSD=35; rNSW=43; rank_mean=40.857; match_rank=49 a 0 0 0 0 0 0 0 9 96 78 72 96 8 0 0 0 0 0 0 0 c 0 0 0 0 0 8 0 0 0 8 8 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 1 0 0 0 8 8 0 69 0 0 0 0 0 0 0 t 0 0 0 0 0 87 96 87 0 2 8 0 11 0 0 0 0 0 0 0
TATA_BINDING__1vto_B_3D-footprint_rc_shift5 (TATA_BINDING__1vto_B_3D-footprint_rc)	0.776	0.453	1.174	-0.029	0.872	1.609	0.885	40	49	39	44	45	36	44	42.429	50	; oligos_5-7nt_m4 versus TATA_BINDING__1vto_B_3D-footprint_rc; m=29/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=42.4286; -----TATAAaAg------- ; cor=0.776; Ncor=0.453; logoDP=1.174; NIcor=-0.029; NsEucl=0.872; SSD=1.609; NSW=0.885; rcor=40; rNcor=49; rlogoDP=39; rNIcor=44; rNsEucl=45; rSSD=36; rNSW=44; rank_mean=42.429; match_rank=50 a 0 0 0 0 0 0 96 0 96 96 57 96 13 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 13 0 16 0 0 0 0 0 0 0
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc)	0.771	0.450	1.174	-0.028	0.871	1.633	0.883	42	50	40	43	47	37	46	43.571	51	; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc; m=30/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=43.5714; -----TATAAaAg------- ; cor=0.771; Ncor=0.450; logoDP=1.174; NIcor=-0.028; NsEucl=0.871; SSD=1.633; NSW=0.883; rcor=42; rNcor=50; rlogoDP=40; rNIcor=43; rNsEucl=47; rSSD=37; rNSW=46; rank_mean=43.571; match_rank=51 a 0 0 0 0 0 0 96 0 96 96 54 96 16 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0 0 t 0 0 0 0 0 96 0 96 0 0 16 0 13 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m3_shift0 ; 7 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m3_shift0 (oligos_5-7nt_m3)
; oligos_5-7nt_m3; m=0 (reference); ncol1=11; shift=0; ncol=12; ggACGGGACgr- ; Alignment reference a 18 17 67 4 2 5 2 74 4 18 22 0 c 18 18 3 59 3 1 2 0 61 18 16 0 g 25 29 1 7 68 65 67 0 5 28 26 0 t 14 11 4 5 2 4 4 1 5 11 11 0

LjT20A21.20.nc_M1663_1.02_CISBP_shift4 (LjT20A21.20.nc_M1663_1.02_CISBP) 0.829 0.484 4.858 0.460 0.880 1.415 0.899 15 36 13 32 36 22 35 27.000 24
; oligos_5-7nt_m3 versus LjT20A21.20.nc_M1663_1.02_CISBP; m=1/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 27; ----GGGACCAy ; cor=0.829; Ncor=0.484; logoDP=4.858; NIcor=0.460; NsEucl=0.880; SSD=1.415; NSW=0.899; rcor=15; rNcor=36; rlogoDP=13; rNIcor=32; rNsEucl=36; rSSD=22; rNSW=35; rank_mean=27.000; match_rank=24 a 0 0 0 0 5 0 0 93 0 0 88 6 c 0 0 0 0 0 0 0 7 100 100 4 59 g 0 0 0 0 75 100 100 0 0 0 8 6 t 0 0 0 0 20 0 0 0 0 0 0 29

TCP5_M1650_1.02_CISBP_shift4 (TCP5_M1650_1.02_CISBP) 0.843 0.492 6.054 0.475 0.873 1.582 0.887 12 32 9 27 42 33 41 28.000 29
; oligos_5-7nt_m3 versus TCP5_M1650_1.02_CISBP; m=2/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 28; ----GGGACCAY ; cor=0.843; Ncor=0.492; logoDP=6.054; NIcor=0.475; NsEucl=0.873; SSD=1.582; NSW=0.887; rcor=12; rNcor=32; rlogoDP=9; rNIcor=27; rNsEucl=42; rSSD=33; rNSW=41; rank_mean=28.000; match_rank=29 a 0 0 0 0 0 0 0 100 0 0 100 0 c 0 0 0 0 0 0 0 0 100 100 0 74 g 0 0 0 0 100 100 100 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 26

XM_002866361.1_M1655_1.02_CISBP_shift4 (XM_002866361.1_M1655_1.02_CISBP) 0.843 0.492 6.054 0.475 0.873 1.582 0.887 12 32 9 27 42 33 41 28.000 30
; oligos_5-7nt_m3 versus XM_002866361.1_M1655_1.02_CISBP; m=3/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 28; ----GGGACCAC ; cor=0.843; Ncor=0.492; logoDP=6.054; NIcor=0.475; NsEucl=0.873; SSD=1.582; NSW=0.887; rcor=12; rNcor=32; rlogoDP=9; rNIcor=27; rNsEucl=42; rSSD=33; rNSW=41; rank_mean=28.000; match_rank=30 a 0 0 0 0 0 0 0 100 0 0 100 0 c 0 0 0 0 0 0 0 0 100 100 0 100 g 0 0 0 0 100 100 100 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0

TCP5_MA1067.1_JASPAR_shift4 (TCP5_MA1067.1_JASPAR) 0.843 0.492 5.831 0.475 0.874 1.551 0.889 14 34 11 29 41 32 40 28.714 32
; oligos_5-7nt_m3 versus TCP5_MA1067.1_JASPAR; m=4/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=28.7143; ----GGGACCAY ; cor=0.843; Ncor=0.492; logoDP=5.831; NIcor=0.475; NsEucl=0.874; SSD=1.551; NSW=0.889; rcor=14; rNcor=34; rlogoDP=11; rNIcor=29; rNsEucl=41; rSSD=32; rNSW=40; rank_mean=28.714; match_rank=32 a 0 0 0 0 2 2 2 995 2 2 995 2 c 0 0 0 0 2 2 2 2 995 995 2 745 g 0 0 0 0 993 995 995 2 2 2 2 2 t 0 0 0 0 2 2 2 2 2 2 2 250

TCP4_MA1035.1_JASPAR_shift4 (TCP4_MA1035.1_JASPAR) 0.800 0.467 4.439 0.436 0.871 1.641 0.883 23 41 17 33 48 38 47 35.286 43
; oligos_5-7nt_m3 versus TCP4_MA1035.1_JASPAR; m=5/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=35.2857; ----GGGACCAC ; cor=0.800; Ncor=0.467; logoDP=4.439; NIcor=0.436; NsEucl=0.871; SSD=1.641; NSW=0.883; rcor=23; rNcor=41; rlogoDP=17; rNIcor=33; rNsEucl=48; rSSD=38; rNSW=47; rank_mean=35.286; match_rank=43 a 0 0 0 0 112 1 1 831 1 1 997 1 c 0 0 0 0 1 1 1 167 998 998 1 996 g 0 0 0 0 775 998 998 1 1 1 1 1 t 0 0 0 0 112 1 1 1 1 1 1 1

MEE35_M1646_1.02_CISBP_shift4 (MEE35_M1646_1.02_CISBP) 0.800 0.467 4.523 0.436 0.870 1.655 0.882 24 42 16 34 50 39 50 36.429 44
; oligos_5-7nt_m3 versus MEE35_M1646_1.02_CISBP; m=6/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=36.4286; ----GGGACCAC ; cor=0.800; Ncor=0.467; logoDP=4.523; NIcor=0.436; NsEucl=0.870; SSD=1.655; NSW=0.882; rcor=24; rNcor=42; rlogoDP=16; rNIcor=34; rNsEucl=50; rSSD=39; rNSW=50; rank_mean=36.429; match_rank=44 a 0 0 0 0 11 0 0 83 0 0 100 0 c 0 0 0 0 0 0 0 17 100 100 0 100 g 0 0 0 0 78 100 100 0 0 0 0 0 t 0 0 0 0 11 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m3_shift0 (oligos_5-7nt_m3)																	; oligos_5-7nt_m3; m=0 (reference); ncol1=11; shift=0; ncol=12; ggACGGGACgr- ; Alignment reference a 18 17 67 4 2 5 2 74 4 18 22 0 c 18 18 3 59 3 1 2 0 61 18 16 0 g 25 29 1 7 68 65 67 0 5 28 26 0 t 14 11 4 5 2 4 4 1 5 11 11 0
LjT20A21.20.nc_M1663_1.02_CISBP_shift4 (LjT20A21.20.nc_M1663_1.02_CISBP)	0.829	0.484	4.858	0.460	0.880	1.415	0.899	15	36	13	32	36	22	35	27.000	24	; oligos_5-7nt_m3 versus LjT20A21.20.nc_M1663_1.02_CISBP; m=1/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 27; ----GGGACCAy ; cor=0.829; Ncor=0.484; logoDP=4.858; NIcor=0.460; NsEucl=0.880; SSD=1.415; NSW=0.899; rcor=15; rNcor=36; rlogoDP=13; rNIcor=32; rNsEucl=36; rSSD=22; rNSW=35; rank_mean=27.000; match_rank=24 a 0 0 0 0 5 0 0 93 0 0 88 6 c 0 0 0 0 0 0 0 7 100 100 4 59 g 0 0 0 0 75 100 100 0 0 0 8 6 t 0 0 0 0 20 0 0 0 0 0 0 29
TCP5_M1650_1.02_CISBP_shift4 (TCP5_M1650_1.02_CISBP)	0.843	0.492	6.054	0.475	0.873	1.582	0.887	12	32	9	27	42	33	41	28.000	29	; oligos_5-7nt_m3 versus TCP5_M1650_1.02_CISBP; m=2/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 28; ----GGGACCAY ; cor=0.843; Ncor=0.492; logoDP=6.054; NIcor=0.475; NsEucl=0.873; SSD=1.582; NSW=0.887; rcor=12; rNcor=32; rlogoDP=9; rNIcor=27; rNsEucl=42; rSSD=33; rNSW=41; rank_mean=28.000; match_rank=29 a 0 0 0 0 0 0 0 100 0 0 100 0 c 0 0 0 0 0 0 0 0 100 100 0 74 g 0 0 0 0 100 100 100 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 26
XM_002866361.1_M1655_1.02_CISBP_shift4 (XM_002866361.1_M1655_1.02_CISBP)	0.843	0.492	6.054	0.475	0.873	1.582	0.887	12	32	9	27	42	33	41	28.000	30	; oligos_5-7nt_m3 versus XM_002866361.1_M1655_1.02_CISBP; m=3/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 28; ----GGGACCAC ; cor=0.843; Ncor=0.492; logoDP=6.054; NIcor=0.475; NsEucl=0.873; SSD=1.582; NSW=0.887; rcor=12; rNcor=32; rlogoDP=9; rNIcor=27; rNsEucl=42; rSSD=33; rNSW=41; rank_mean=28.000; match_rank=30 a 0 0 0 0 0 0 0 100 0 0 100 0 c 0 0 0 0 0 0 0 0 100 100 0 100 g 0 0 0 0 100 100 100 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0
TCP5_MA1067.1_JASPAR_shift4 (TCP5_MA1067.1_JASPAR)	0.843	0.492	5.831	0.475	0.874	1.551	0.889	14	34	11	29	41	32	40	28.714	32	; oligos_5-7nt_m3 versus TCP5_MA1067.1_JASPAR; m=4/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=28.7143; ----GGGACCAY ; cor=0.843; Ncor=0.492; logoDP=5.831; NIcor=0.475; NsEucl=0.874; SSD=1.551; NSW=0.889; rcor=14; rNcor=34; rlogoDP=11; rNIcor=29; rNsEucl=41; rSSD=32; rNSW=40; rank_mean=28.714; match_rank=32 a 0 0 0 0 2 2 2 995 2 2 995 2 c 0 0 0 0 2 2 2 2 995 995 2 745 g 0 0 0 0 993 995 995 2 2 2 2 2 t 0 0 0 0 2 2 2 2 2 2 2 250
TCP4_MA1035.1_JASPAR_shift4 (TCP4_MA1035.1_JASPAR)	0.800	0.467	4.439	0.436	0.871	1.641	0.883	23	41	17	33	48	38	47	35.286	43	; oligos_5-7nt_m3 versus TCP4_MA1035.1_JASPAR; m=5/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=35.2857; ----GGGACCAC ; cor=0.800; Ncor=0.467; logoDP=4.439; NIcor=0.436; NsEucl=0.871; SSD=1.641; NSW=0.883; rcor=23; rNcor=41; rlogoDP=17; rNIcor=33; rNsEucl=48; rSSD=38; rNSW=47; rank_mean=35.286; match_rank=43 a 0 0 0 0 112 1 1 831 1 1 997 1 c 0 0 0 0 1 1 1 167 998 998 1 996 g 0 0 0 0 775 998 998 1 1 1 1 1 t 0 0 0 0 112 1 1 1 1 1 1 1
MEE35_M1646_1.02_CISBP_shift4 (MEE35_M1646_1.02_CISBP)	0.800	0.467	4.523	0.436	0.870	1.655	0.882	24	42	16	34	50	39	50	36.429	44	; oligos_5-7nt_m3 versus MEE35_M1646_1.02_CISBP; m=6/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=36.4286; ----GGGACCAC ; cor=0.800; Ncor=0.467; logoDP=4.523; NIcor=0.436; NsEucl=0.870; SSD=1.655; NSW=0.882; rcor=24; rNcor=42; rlogoDP=16; rNIcor=34; rNsEucl=50; rSSD=39; rNSW=50; rank_mean=36.429; match_rank=44 a 0 0 0 0 11 0 0 83 0 0 100 0 c 0 0 0 0 0 0 0 17 100 100 0 100 g 0 0 0 0 78 100 100 0 0 0 0 0 t 0 0 0 0 11 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m1_shift0 ; 2 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m1_shift0 (oligos_5-7nt_m1)
; oligos_5-7nt_m1; m=0 (reference); ncol1=10; shift=0; ncol=10; tvCTAAGkwy ; Alignment reference a 17 18 0 0 70 70 0 13 20 16 c 15 21 70 0 0 0 0 14 15 19 g 14 18 0 0 0 0 70 24 15 10 t 24 13 0 70 0 0 0 19 20 25

CBNAC_M01188_TRANSFAC_rc_shift4 (CBNAC_M01188_TRANSFAC_rc) 0.797 0.478 2.045 0.092 0.870 1.213 0.899 27 39 31 39 49 14 34 33.286 39
; oligos_5-7nt_m1 versus CBNAC_M01188_TRANSFAC_rc; m=1/1; ncol2=6; w=6; offset=4; strand=R; shift=4; score=33.2857; ----AAGCaa ; cor=0.797; Ncor=0.478; logoDP=2.045; NIcor=0.092; NsEucl=0.870; SSD=1.213; NSW=0.899; rcor=27; rNcor=39; rlogoDP=31; rNIcor=39; rNsEucl=49; rSSD=14; rNSW=34; rank_mean=33.286; match_rank=39 a 0 0 0 0 44 44 0 0 22 23 c 0 0 0 0 0 0 0 44 5 9 g 0 0 0 0 0 0 44 0 4 5 t 0 0 0 0 0 0 0 0 9 1