Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m2_shift2 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift2.png) |
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; oligos_5-7nt_m2; m=0 (reference); ncol1=10; shift=2; ncol=13; --rcATGCATgy-
; Alignment reference
a 0 0 21 17 76 0 0 0 76 0 15 14 0
c 0 0 12 38 0 0 0 76 0 0 6 29 0
g 0 0 29 6 0 0 76 0 0 0 38 12 0
t 0 0 14 15 0 76 0 0 0 76 17 21 0
|
LEC2_M0146_1.02_CISBP_shift4 (LEC2_M0146_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LEC2_M0146_1.02_CISBP_shift4.png) |
0.898 |
0.718 |
10.467 |
0.679 |
0.908 |
1.081 |
0.932 |
7 |
4 |
1 |
2 |
11 |
11 |
11 |
6.714 |
1 |
; oligos_5-7nt_m2 versus LEC2_M0146_1.02_CISBP; m=1/10; ncol2=8; w=8; offset=2; strand=D; shift=4; score= 6.7143; ----mTGCATGC-
; cor=0.898; Ncor=0.718; logoDP=10.467; NIcor=0.679; NsEucl=0.908; SSD=1.081; NSW=0.932; rcor=7; rNcor=4; rlogoDP=1; rNIcor=2; rNsEucl=11; rSSD=11; rNSW=11; rank_mean=6.714; match_rank=1
a 0 0 0 0 67 0 0 0 100 0 0 0 0
c 0 0 0 0 33 0 0 100 0 0 0 100 0
g 0 0 0 0 0 0 100 0 0 0 100 0 0
t 0 0 0 0 0 100 0 0 0 100 0 0 0
|
ABI3_ABI3_Athamap_shift0 (ABI3_ABI3_Athamap) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ABI3_ABI3_Athamap_shift0.png) |
0.940 |
0.548 |
9.750 |
0.542 |
0.924 |
0.568 |
0.959 |
3 |
25 |
3 |
21 |
5 |
5 |
5 |
9.571 |
3 |
; oligos_5-7nt_m2 versus ABI3_ABI3_Athamap; m=2/10; ncol2=9; w=7; offset=-2; strand=D; shift=0; score= 9.5714; sksCATGCA----
; cor=0.940; Ncor=0.548; logoDP=9.750; NIcor=0.542; NsEucl=0.924; SSD=0.568; NSW=0.959; rcor=3; rNcor=25; rlogoDP=3; rNIcor=21; rNsEucl=5; rSSD=5; rNSW=5; rank_mean=9.571; match_rank=3
a 0 0 0 0 3 0 0 0 3 0 0 0 0
c 1 0 1 3 0 0 0 3 0 0 0 0 0
g 2 1 2 0 0 0 3 0 0 0 0 0 0
t 0 2 0 0 0 3 0 0 0 0 0 0 0
|
ABI3_MA0564.1_JASPAR_shift0 (ABI3_MA0564.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ABI3_MA0564.1_JASPAR_shift0.png) |
0.872 |
0.509 |
6.065 |
0.473 |
0.900 |
0.979 |
0.930 |
11 |
29 |
8 |
30 |
22 |
10 |
12 |
17.429 |
10 |
; oligos_5-7nt_m2 versus ABI3_MA0564.1_JASPAR; m=3/10; ncol2=9; w=7; offset=-2; strand=D; shift=0; score=17.4286; ytGCATGCa----
; cor=0.872; Ncor=0.509; logoDP=6.065; NIcor=0.473; NsEucl=0.900; SSD=0.979; NSW=0.930; rcor=11; rNcor=29; rlogoDP=8; rNIcor=30; rNsEucl=22; rSSD=10; rNSW=12; rank_mean=17.429; match_rank=10
a 6 15 3 1 97 1 1 6 50 0 0 0 0
c 60 16 7 96 1 1 1 84 15 0 0 0 0
g 9 15 85 2 1 1 96 8 13 0 0 0 0
t 25 53 5 1 1 97 1 2 22 0 0 0 0
|
FUS3_FUS3_Athamap_rc_shift4 (FUS3_FUS3_Athamap_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/FUS3_FUS3_Athamap_rc_shift4.png) |
0.928 |
0.743 |
0.063 |
-0.226 |
0.925 |
0.725 |
0.955 |
5 |
2 |
51 |
52 |
4 |
8 |
8 |
18.571 |
12 |
; oligos_5-7nt_m2 versus FUS3_FUS3_Athamap_rc; m=4/10; ncol2=8; w=8; offset=2; strand=R; shift=4; score=18.5714; ----WTGCATGS-
; cor=0.928; Ncor=0.743; logoDP=0.063; NIcor=-0.226; NsEucl=0.925; SSD=0.725; NSW=0.955; rcor=5; rNcor=2; rlogoDP=51; rNIcor=52; rNsEucl=4; rSSD=8; rNSW=8; rank_mean=18.571; match_rank=12
a 0 0 0 0 3 0 0 0 4 0 0 0 0
c 0 0 0 0 0 0 0 4 0 0 0 3 0
g 0 0 0 0 0 0 4 0 0 0 4 1 0
t 0 0 0 0 1 4 0 0 0 4 0 0 0
|
IDEF1_M01880_TRANSFAC_shift3 (IDEF1_M01880_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/IDEF1_M01880_TRANSFAC_shift3.png) |
0.821 |
0.568 |
6.333 |
0.564 |
0.902 |
1.550 |
0.914 |
19 |
21 |
7 |
16 |
20 |
31 |
23 |
19.571 |
13 |
; oligos_5-7nt_m2 versus IDEF1_M01880_TRANSFAC; m=5/10; ncol2=12; w=9; offset=1; strand=D; shift=3; score=19.5714; ---SAwGCwTsAw
; cor=0.821; Ncor=0.568; logoDP=6.333; NIcor=0.564; NsEucl=0.902; SSD=1.550; NSW=0.914; rcor=19; rNcor=21; rlogoDP=7; rNIcor=16; rNsEucl=20; rSSD=31; rNSW=23; rank_mean=19.571; match_rank=13
a 0 0 0 0 8 2 0 0 5 0 1 6 2
c 0 0 0 6 0 0 1 6 0 0 4 1 1
g 0 0 0 2 0 1 6 1 0 0 3 0 0
t 0 0 0 0 0 5 1 1 3 8 0 1 5
|
AtLEC2_AtLEC2_Athamap_shift1 (AtLEC2_AtLEC2_Athamap) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtLEC2_AtLEC2_Athamap_shift1.png) |
0.782 |
0.640 |
9.807 |
0.638 |
0.886 |
2.121 |
0.882 |
37 |
12 |
2 |
8 |
34 |
51 |
48 |
27.429 |
25 |
; oligos_5-7nt_m2 versus AtLEC2_AtLEC2_Athamap; m=6/10; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=27.4286; -kyCATGCAaa--
; cor=0.782; Ncor=0.640; logoDP=9.807; NIcor=0.638; NsEucl=0.886; SSD=2.121; NSW=0.882; rcor=37; rNcor=12; rlogoDP=2; rNIcor=8; rNsEucl=34; rSSD=51; rNSW=48; rank_mean=27.429; match_rank=25
a 0 2 2 0 9 0 0 0 9 5 5 0 0
c 0 0 4 9 0 0 0 9 0 1 1 0 0
g 0 3 0 0 0 0 9 0 0 1 1 0 0
t 0 4 3 0 0 9 0 0 0 1 1 0 0
|
EIN3_M0682_1.02_CISBP_shift2 (EIN3_M0682_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/EIN3_M0682_1.02_CISBP_shift2.png) |
0.767 |
0.767 |
1.814 |
0.805 |
0.891 |
2.360 |
0.882 |
44 |
1 |
33 |
1 |
29 |
52 |
49 |
29.857 |
34 |
; oligos_5-7nt_m2 versus EIN3_M0682_1.02_CISBP; m=7/10; ncol2=10; w=10; offset=0; strand=D; shift=2; score=29.8571; --kgrTryAycm-
; cor=0.767; Ncor=0.767; logoDP=1.814; NIcor=0.805; NsEucl=0.891; SSD=2.360; NSW=0.882; rcor=44; rNcor=1; rlogoDP=33; rNIcor=1; rNsEucl=29; rSSD=52; rNSW=49; rank_mean=29.857; match_rank=34
a 0 0 24 24 45 9 30 18 73 11 24 25 0
c 0 0 22 16 9 18 5 47 0 35 36 29 0
g 0 0 29 36 35 0 47 5 19 9 16 22 0
t 0 0 25 24 11 73 18 30 8 45 24 24 0
|
LEC2_MA0581.1_JASPAR_rc_shift2 (LEC2_MA0581.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LEC2_MA0581.1_JASPAR_rc_shift2.png) |
0.791 |
0.719 |
0.017 |
-0.175 |
0.903 |
1.887 |
0.906 |
31 |
3 |
52 |
51 |
17 |
47 |
31 |
33.143 |
38 |
; oligos_5-7nt_m2 versus LEC2_MA0581.1_JASPAR_rc; m=8/10; ncol2=11; w=10; offset=0; strand=R; shift=2; score=33.1429; --awgyGCATGsa
; cor=0.791; Ncor=0.719; logoDP=0.017; NIcor=-0.175; NsEucl=0.903; SSD=1.887; NSW=0.906; rcor=31; rNcor=3; rlogoDP=52; rNIcor=51; rNsEucl=17; rSSD=47; rNSW=31; rank_mean=33.143; match_rank=38
a 0 0 250 129 94 0 0 0 487 0 10 63 175
c 0 0 62 44 60 156 0 487 0 0 0 165 119
g 0 0 79 86 218 30 487 0 0 0 475 163 86
t 0 0 96 228 115 301 0 0 0 487 2 96 107
|
NAC_domain-containing_protein_19_3swm_B_3D-footprint_shift5 (NAC_domain-containing_protein_19_3swm_B_3D-footprint) |
![](peaks_motifs_vs_db_footDB_aligned_logos/NAC_domain-containing_protein_19_3swm_B_3D-footprint_shift5.png) |
0.801 |
0.480 |
2.616 |
0.428 |
0.861 |
1.389 |
0.884 |
22 |
38 |
24 |
35 |
52 |
21 |
45 |
33.857 |
42 |
; oligos_5-7nt_m2 versus NAC_domain-containing_protein_19_3swm_B_3D-footprint; m=9/10; ncol2=6; w=6; offset=3; strand=D; shift=5; score=33.8571; -----TGCnTG--
; cor=0.801; Ncor=0.480; logoDP=2.616; NIcor=0.428; NsEucl=0.861; SSD=1.389; NSW=0.884; rcor=22; rNcor=38; rlogoDP=24; rNIcor=35; rNsEucl=52; rSSD=21; rNSW=45; rank_mean=33.857; match_rank=42
a 0 0 0 0 0 9 7 7 24 7 0 0 0
c 0 0 0 0 0 7 9 75 24 9 0 0 0
g 0 0 0 0 0 7 73 7 24 7 96 0 0
t 0 0 0 0 0 73 7 7 24 73 0 0 0
|
FUS3_MA0565.1_JASPAR_rc_shift0 (FUS3_MA0565.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/FUS3_MA0565.1_JASPAR_rc_shift0.png) |
0.799 |
0.466 |
0.173 |
-0.169 |
0.869 |
1.685 |
0.880 |
26 |
43 |
50 |
49 |
51 |
42 |
51 |
44.571 |
52 |
; oligos_5-7nt_m2 versus FUS3_MA0565.1_JASPAR_rc; m=10/10; ncol2=9; w=7; offset=-2; strand=R; shift=0; score=44.5714; syGCATGCr----
; cor=0.799; Ncor=0.466; logoDP=0.173; NIcor=-0.169; NsEucl=0.869; SSD=1.685; NSW=0.880; rcor=26; rNcor=43; rlogoDP=50; rNIcor=49; rNsEucl=51; rSSD=42; rNSW=51; rank_mean=44.571; match_rank=52
a 16 9 1 1 99 1 0 1 28 0 0 0 0
c 25 59 2 99 1 0 0 97 4 0 0 0 0
g 44 3 97 0 0 0 99 2 61 0 0 0 0
t 15 29 1 0 1 99 1 1 8 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m4_shift6 (oligos_5-7nt_m4) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m4_shift6.png) |
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; oligos_5-7nt_m4; m=0 (reference); ncol1=11; shift=6; ncol=20; ------aaAAAAGGAkr---
; Alignment reference
a 0 0 0 0 0 0 47 38 109 101 105 108 3 4 112 24 31 0 0 0
c 0 0 0 0 0 0 29 29 5 9 6 4 6 1 1 26 29 0 0 0
g 0 0 0 0 0 0 23 25 5 7 6 4 112 113 4 38 32 0 0 0
t 0 0 0 0 0 0 23 30 3 5 5 6 1 4 5 34 30 0 0 0
|
AY750993_VRN1_EEADannot_shift4 (AY750993_VRN1_EEADannot) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AY750993_VRN1_EEADannot_shift4.png) |
0.926 |
0.570 |
3.318 |
0.572 |
0.939 |
0.469 |
0.971 |
6 |
20 |
22 |
15 |
3 |
3 |
3 |
10.286 |
4 |
; oligos_5-7nt_m4 versus AY750993_VRN1_EEADannot; m=1/30; ncol2=10; w=8; offset=-2; strand=D; shift=4; score=10.2857; ----CCarAAAwGG------
; cor=0.926; Ncor=0.570; logoDP=3.318; NIcor=0.572; NsEucl=0.939; SSD=0.469; NSW=0.971; rcor=6; rNcor=20; rlogoDP=22; rNIcor=15; rNsEucl=3; rSSD=3; rNSW=3; rank_mean=10.286; match_rank=4
a 0 0 0 0 19 9 57 56 95 84 79 57 24 15 0 0 0 0 0 0
c 0 0 0 0 72 71 17 7 1 1 7 3 0 0 0 0 0 0 0 0
g 0 0 0 0 7 8 14 31 4 3 7 9 76 85 0 0 0 0 0 0
t 0 0 0 0 2 12 12 6 0 12 7 31 0 0 0 0 0 0 0 0
|
Dof_M01136_TRANSFAC_shift5 (Dof_M01136_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Dof_M01136_TRANSFAC_shift5.png) |
0.826 |
0.689 |
4.717 |
0.661 |
0.919 |
1.324 |
0.934 |
16 |
7 |
15 |
5 |
9 |
19 |
9 |
11.429 |
5 |
; oligos_5-7nt_m4 versus Dof_M01136_TRANSFAC; m=2/30; ncol2=11; w=10; offset=-1; strand=D; shift=5; score=11.4286; -----amaaAAAGwar----
; cor=0.826; Ncor=0.689; logoDP=4.717; NIcor=0.661; NsEucl=0.919; SSD=1.324; NSW=0.934; rcor=16; rNcor=7; rlogoDP=15; rNIcor=5; rNsEucl=9; rSSD=19; rNSW=9; rank_mean=11.429; match_rank=5
a 0 0 0 0 0 4 3 6 6 9 9 9 0 3 5 3 0 0 0 0
c 0 0 0 0 0 2 3 0 0 0 0 0 0 1 1 2 0 0 0 0
g 0 0 0 0 0 2 1 2 2 0 0 0 9 2 2 3 0 0 0 0
t 0 0 0 0 0 1 2 1 1 0 0 0 0 3 1 1 0 0 0 0
|
PBF_M01130_TRANSFAC_shift8 (PBF_M01130_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01130_TRANSFAC_shift8.png) |
0.929 |
0.507 |
4.784 |
0.489 |
0.919 |
0.471 |
0.961 |
4 |
30 |
14 |
26 |
8 |
4 |
4 |
12.857 |
7 |
; oligos_5-7nt_m4 versus PBF_M01130_TRANSFAC; m=3/30; ncol2=6; w=6; offset=2; strand=D; shift=8; score=12.8571; --------wAAAGg------
; cor=0.929; Ncor=0.507; logoDP=4.784; NIcor=0.489; NsEucl=0.919; SSD=0.471; NSW=0.961; rcor=4; rNcor=30; rlogoDP=14; rNIcor=26; rNsEucl=8; rSSD=4; rNSW=4; rank_mean=12.857; match_rank=7
a 0 0 0 0 0 0 0 0 6 11 11 11 0 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 1 0 0 0 11 7 0 0 0 0 0 0
t 0 0 0 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0 0 0
|
TMO6_M0654_1.02_CISBP_shift6 (TMO6_M0654_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TMO6_M0654_1.02_CISBP_shift6.png) |
0.890 |
0.567 |
1.684 |
0.560 |
0.923 |
0.585 |
0.958 |
8 |
23 |
34 |
17 |
6 |
6 |
6 |
14.286 |
8 |
; oligos_5-7nt_m4 versus TMO6_M0654_1.02_CISBP; m=4/30; ncol2=7; w=7; offset=0; strand=D; shift=6; score=14.2857; ------vawAAmG-------
; cor=0.890; Ncor=0.567; logoDP=1.684; NIcor=0.560; NsEucl=0.923; SSD=0.585; NSW=0.958; rcor=8; rNcor=23; rlogoDP=34; rNIcor=17; rNsEucl=6; rSSD=6; rNSW=6; rank_mean=14.286; match_rank=8
a 0 0 0 0 0 0 25 33 40 84 85 61 7 0 0 0 0 0 0 0
c 0 0 0 0 0 0 25 21 13 6 8 33 5 0 0 0 0 0 0 0
g 0 0 0 0 0 0 26 23 15 2 0 1 77 0 0 0 0 0 0 0
t 0 0 0 0 0 0 24 23 32 8 7 5 11 0 0 0 0 0 0 0
|
DOF5.3_MA1071.1_JASPAR_shift6 (DOF5.3_MA1071.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.3_MA1071.1_JASPAR_shift6.png) |
0.888 |
0.565 |
1.681 |
0.558 |
0.922 |
0.597 |
0.957 |
9 |
24 |
35 |
18 |
7 |
7 |
7 |
15.286 |
9 |
; oligos_5-7nt_m4 versus DOF5.3_MA1071.1_JASPAR; m=5/30; ncol2=7; w=7; offset=0; strand=D; shift=6; score=15.2857; ------gawAAmG-------
; cor=0.888; Ncor=0.565; logoDP=1.681; NIcor=0.558; NsEucl=0.922; SSD=0.597; NSW=0.957; rcor=9; rNcor=24; rlogoDP=35; rNIcor=18; rNsEucl=7; rSSD=7; rNSW=7; rank_mean=15.286; match_rank=9
a 0 0 0 0 0 0 247 327 396 842 850 611 66 0 0 0 0 0 0 0
c 0 0 0 0 0 0 247 213 128 61 79 329 52 0 0 0 0 0 0 0
g 0 0 0 0 0 0 262 228 146 17 0 14 767 0 0 0 0 0 0 0
t 0 0 0 0 0 0 244 233 331 81 70 47 116 0 0 0 0 0 0 0
|
DOF5.6_MA0983.1_JASPAR_shift6 (DOF5.6_MA0983.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_MA0983.1_JASPAR_shift6.png) |
0.784 |
0.570 |
2.488 |
0.550 |
0.901 |
1.264 |
0.921 |
36 |
19 |
25 |
19 |
21 |
16 |
13 |
21.286 |
14 |
; oligos_5-7nt_m4 versus DOF5.6_MA0983.1_JASPAR; m=6/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=21.2857; ------vawAAmGt------
; cor=0.784; Ncor=0.570; logoDP=2.488; NIcor=0.550; NsEucl=0.901; SSD=1.264; NSW=0.921; rcor=36; rNcor=19; rlogoDP=25; rNIcor=19; rNsEucl=21; rSSD=16; rNSW=13; rank_mean=21.286; match_rank=14
a 0 0 0 0 0 0 254 364 432 955 928 613 50 152 0 0 0 0 0 0
c 0 0 0 0 0 0 257 170 84 35 40 308 28 247 0 0 0 0 0 0
g 0 0 0 0 0 0 262 227 108 1 1 56 884 213 0 0 0 0 0 0
t 0 0 0 0 0 0 228 239 376 10 32 24 38 388 0 0 0 0 0 0
|
CDF2_M0653_1.02_CISBP_shift6 (CDF2_M0653_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_M0653_1.02_CISBP_shift6.png) |
0.764 |
0.694 |
3.833 |
0.676 |
0.908 |
1.710 |
0.914 |
45 |
5 |
20 |
3 |
14 |
45 |
20 |
21.714 |
15 |
; oligos_5-7nt_m4 versus CDF2_M0653_1.02_CISBP; m=7/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=21.7143; ------maWAAAGyrh----
; cor=0.764; Ncor=0.694; logoDP=3.833; NIcor=0.676; NsEucl=0.908; SSD=1.710; NSW=0.914; rcor=45; rNcor=5; rlogoDP=20; rNIcor=3; rNsEucl=14; rSSD=45; rNSW=20; rank_mean=21.714; match_rank=15
a 0 0 0 0 0 0 33 61 69 98 98 87 2 5 33 30 0 0 0 0
c 0 0 0 0 0 0 29 9 2 1 1 3 1 29 8 28 0 0 0 0
g 0 0 0 0 0 0 23 15 4 0 0 8 97 16 39 16 0 0 0 0
t 0 0 0 0 0 0 15 15 25 1 1 2 0 50 20 26 0 0 0 0
|
e_gw1.149.93.1_M0658_1.02_CISBP_shift6 (e_gw1.149.93.1_M0658_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.149.93.1_M0658_1.02_CISBP_shift6.png) |
0.801 |
0.583 |
1.040 |
0.580 |
0.898 |
1.339 |
0.916 |
21 |
17 |
44 |
13 |
26 |
20 |
15 |
22.286 |
16 |
; oligos_5-7nt_m4 versus e_gw1.149.93.1_M0658_1.02_CISBP; m=8/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=22.2857; ------vrwaAmGy------
; cor=0.801; Ncor=0.583; logoDP=1.040; NIcor=0.580; NsEucl=0.898; SSD=1.339; NSW=0.916; rcor=21; rNcor=17; rlogoDP=44; rNIcor=13; rNsEucl=26; rSSD=20; rNSW=15; rank_mean=22.286; match_rank=16
a 0 0 0 0 0 0 25 33 40 65 70 57 8 17 0 0 0 0 0 0
c 0 0 0 0 0 0 26 20 14 13 10 25 8 26 0 0 0 0 0 0
g 0 0 0 0 0 0 26 25 16 8 5 0 76 22 0 0 0 0 0 0
t 0 0 0 0 0 0 23 22 30 14 15 18 8 35 0 0 0 0 0 0
|
DOF5.6_M0657_1.02_CISBP_shift6 (DOF5.6_M0657_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF5.6_M0657_1.02_CISBP_shift6.png) |
0.781 |
0.568 |
2.474 |
0.548 |
0.900 |
1.279 |
0.920 |
38 |
22 |
26 |
20 |
23 |
17 |
14 |
22.857 |
17 |
; oligos_5-7nt_m4 versus DOF5.6_M0657_1.02_CISBP; m=9/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=22.8571; ------vawAAmGy------
; cor=0.781; Ncor=0.568; logoDP=2.474; NIcor=0.548; NsEucl=0.900; SSD=1.279; NSW=0.920; rcor=38; rNcor=22; rlogoDP=26; rNIcor=20; rNsEucl=23; rSSD=17; rNSW=14; rank_mean=22.857; match_rank=17
a 0 0 0 0 0 0 25 36 43 95 93 61 5 15 0 0 0 0 0 0
c 0 0 0 0 0 0 26 17 8 3 4 31 3 25 0 0 0 0 0 0
g 0 0 0 0 0 0 26 23 11 0 0 6 88 21 0 0 0 0 0 0
t 0 0 0 0 0 0 23 24 38 2 3 2 4 39 0 0 0 0 0 0
|
CDF2_MA0973.1_JASPAR_shift6 (CDF2_MA0973.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CDF2_MA0973.1_JASPAR_shift6.png) |
0.762 |
0.693 |
3.818 |
0.676 |
0.907 |
1.725 |
0.914 |
46 |
6 |
21 |
4 |
16 |
46 |
24 |
23.286 |
18 |
; oligos_5-7nt_m4 versus CDF2_MA0973.1_JASPAR; m=10/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=23.2857; ------maWAAAGyrh----
; cor=0.762; Ncor=0.693; logoDP=3.818; NIcor=0.676; NsEucl=0.907; SSD=1.725; NSW=0.914; rcor=46; rNcor=6; rlogoDP=21; rNIcor=4; rNsEucl=16; rSSD=46; rNSW=24; rank_mean=23.286; match_rank=18
a 0 0 0 0 0 0 334 608 693 980 979 868 17 53 328 299 0 0 0 0
c 0 0 0 0 0 0 284 92 16 10 10 29 7 295 77 282 0 0 0 0
g 0 0 0 0 0 0 235 150 41 4 2 81 969 154 395 155 0 0 0 0
t 0 0 0 0 0 0 148 150 250 5 9 22 6 498 200 264 0 0 0 0
|
e_gw1.170.52.1_M0659_1.02_CISBP_shift6 (e_gw1.170.52.1_M0659_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.170.52.1_M0659_1.02_CISBP_shift6.png) |
0.751 |
0.683 |
2.148 |
0.656 |
0.908 |
1.695 |
0.915 |
51 |
8 |
29 |
6 |
12 |
43 |
16 |
23.571 |
19 |
; oligos_5-7nt_m4 versus e_gw1.170.52.1_M0659_1.02_CISBP; m=11/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=23.5714; ------srwAAAGydr----
; cor=0.751; Ncor=0.683; logoDP=2.148; NIcor=0.656; NsEucl=0.908; SSD=1.695; NSW=0.915; rcor=51; rNcor=8; rlogoDP=29; rNIcor=6; rNsEucl=12; rSSD=43; rNSW=16; rank_mean=23.571; match_rank=19
a 0 0 0 0 0 0 24 30 40 89 89 72 7 18 27 28 0 0 0 0
c 0 0 0 0 0 0 27 22 11 4 5 20 2 26 19 22 0 0 0 0
g 0 0 0 0 0 0 25 26 17 1 0 3 84 23 27 27 0 0 0 0
t 0 0 0 0 0 0 24 22 32 6 6 5 7 33 27 23 0 0 0 0
|
ATDOF2.4_M0648_1.02_CISBP_shift7 (ATDOF2.4_M0648_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ATDOF2.4_M0648_1.02_CISBP_shift7.png) |
0.802 |
0.510 |
1.578 |
0.501 |
0.890 |
1.196 |
0.915 |
20 |
27 |
37 |
23 |
31 |
12 |
19 |
24.143 |
20 |
; oligos_5-7nt_m4 versus ATDOF2.4_M0648_1.02_CISBP; m=12/30; ncol2=7; w=7; offset=1; strand=D; shift=7; score=24.1429; -------awAAaGt------
; cor=0.802; Ncor=0.510; logoDP=1.578; NIcor=0.501; NsEucl=0.890; SSD=1.196; NSW=0.915; rcor=20; rNcor=27; rlogoDP=37; rNIcor=23; rNsEucl=31; rSSD=12; rNSW=19; rank_mean=24.143; match_rank=20
a 0 0 0 0 0 0 0 38 43 81 81 66 9 18 0 0 0 0 0 0
c 0 0 0 0 0 0 0 17 8 7 7 24 7 24 0 0 0 0 0 0
g 0 0 0 0 0 0 0 23 13 2 0 2 76 21 0 0 0 0 0 0
t 0 0 0 0 0 0 0 22 36 10 12 8 8 37 0 0 0 0 0 0
|
PHYPADRAFT_140773_MA0987.1_JASPAR_shift6 (PHYPADRAFT_140773_MA0987.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_140773_MA0987.1_JASPAR_shift6.png) |
0.750 |
0.682 |
2.131 |
0.655 |
0.908 |
1.702 |
0.915 |
52 |
9 |
30 |
7 |
13 |
44 |
18 |
24.714 |
21 |
; oligos_5-7nt_m4 versus PHYPADRAFT_140773_MA0987.1_JASPAR; m=13/30; ncol2=10; w=10; offset=0; strand=D; shift=6; score=24.7143; ------srwAAAGydr----
; cor=0.750; Ncor=0.682; logoDP=2.131; NIcor=0.655; NsEucl=0.908; SSD=1.702; NSW=0.915; rcor=52; rNcor=9; rlogoDP=30; rNIcor=7; rNsEucl=13; rSSD=44; rNSW=18; rank_mean=24.714; match_rank=21
a 0 0 0 0 0 0 243 302 396 888 892 715 72 182 271 280 0 0 0 0
c 0 0 0 0 0 0 266 215 111 43 46 205 22 258 193 218 0 0 0 0
g 0 0 0 0 0 0 253 260 173 10 1 28 839 229 271 272 0 0 0 0
t 0 0 0 0 0 0 238 222 321 60 61 52 67 331 265 229 0 0 0 0
|
DOF2.4_MA0982.1_JASPAR_shift7 (DOF2.4_MA0982.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DOF2.4_MA0982.1_JASPAR_shift7.png) |
0.800 |
0.509 |
1.586 |
0.500 |
0.889 |
1.203 |
0.914 |
25 |
28 |
36 |
24 |
32 |
13 |
22 |
25.714 |
23 |
; oligos_5-7nt_m4 versus DOF2.4_MA0982.1_JASPAR; m=14/30; ncol2=7; w=7; offset=1; strand=D; shift=7; score=25.7143; -------awAAmGt------
; cor=0.800; Ncor=0.509; logoDP=1.586; NIcor=0.500; NsEucl=0.889; SSD=1.203; NSW=0.914; rcor=25; rNcor=28; rlogoDP=36; rNIcor=24; rNsEucl=32; rSSD=13; rNSW=22; rank_mean=25.714; match_rank=23
a 0 0 0 0 0 0 0 381 426 807 815 658 81 177 0 0 0 0 0 0
c 0 0 0 0 0 0 0 171 90 71 66 252 73 242 0 0 0 0 0 0
g 0 0 0 0 0 0 0 233 127 18 1 16 762 210 0 0 0 0 0 0
t 0 0 0 0 0 0 0 215 356 104 118 75 84 371 0 0 0 0 0 0
|
fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift6 (fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP_shift6.png) |
0.786 |
0.571 |
0.864 |
0.577 |
0.893 |
1.453 |
0.909 |
35 |
18 |
46 |
14 |
28 |
24 |
27 |
27.429 |
26 |
; oligos_5-7nt_m4 versus fgenesh1_pg.C_Chr_08.0001000114_M0664_1.02_CISBP; m=15/30; ncol2=8; w=8; offset=0; strand=D; shift=6; score=27.4286; ------sawaamGt------
; cor=0.786; Ncor=0.571; logoDP=0.864; NIcor=0.577; NsEucl=0.893; SSD=1.453; NSW=0.909; rcor=35; rNcor=18; rlogoDP=46; rNIcor=14; rNsEucl=28; rSSD=24; rNSW=27; rank_mean=27.429; match_rank=26
a 0 0 0 0 0 0 24 36 41 62 65 55 13 17 0 0 0 0 0 0
c 0 0 0 0 0 0 26 19 14 14 12 29 9 24 0 0 0 0 0 0
g 0 0 0 0 0 0 27 23 15 8 6 0 71 21 0 0 0 0 0 0
t 0 0 0 0 0 0 23 22 30 16 17 16 7 38 0 0 0 0 0 0
|
PBF_M01829_TRANSFAC_rc_shift8 (PBF_M01829_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PBF_M01829_TRANSFAC_rc_shift8.png) |
0.875 |
0.478 |
0.305 |
-0.146 |
0.894 |
0.802 |
0.933 |
10 |
40 |
49 |
48 |
27 |
9 |
10 |
27.571 |
27 |
; oligos_5-7nt_m4 versus PBF_M01829_TRANSFAC_rc; m=16/30; ncol2=6; w=6; offset=2; strand=R; shift=8; score=27.5714; --------wAAAGk------
; cor=0.875; Ncor=0.478; logoDP=0.305; NIcor=-0.146; NsEucl=0.894; SSD=0.802; NSW=0.933; rcor=10; rNcor=40; rlogoDP=49; rNIcor=48; rNsEucl=27; rSSD=9; rNSW=10; rank_mean=27.571; match_rank=27
a 0 0 0 0 0 0 0 0 7 16 16 16 0 1 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 1 0 0 0 16 7 0 0 0 0 0 0
t 0 0 0 0 0 0 0 0 6 0 0 0 0 6 0 0 0 0 0 0
|
PHYPADRAFT_153324_MA0989.1_JASPAR_shift6 (PHYPADRAFT_153324_MA0989.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PHYPADRAFT_153324_MA0989.1_JASPAR_shift6.png) |
0.755 |
0.618 |
2.346 |
0.593 |
0.899 |
1.663 |
0.908 |
48 |
14 |
28 |
11 |
24 |
40 |
28 |
27.571 |
28 |
; oligos_5-7nt_m4 versus PHYPADRAFT_153324_MA0989.1_JASPAR; m=17/30; ncol2=9; w=9; offset=0; strand=D; shift=6; score=27.5714; ------vrwAAaGyd-----
; cor=0.755; Ncor=0.618; logoDP=2.346; NIcor=0.593; NsEucl=0.899; SSD=1.663; NSW=0.908; rcor=48; rNcor=14; rlogoDP=28; rNIcor=11; rNsEucl=24; rSSD=40; rNSW=28; rank_mean=27.571; match_rank=28
a 0 0 0 0 0 0 253 334 482 861 926 672 71 139 285 0 0 0 0 0
c 0 0 0 0 0 0 264 193 71 62 36 147 27 288 158 0 0 0 0 0
g 0 0 0 0 0 0 261 255 118 13 0 52 898 195 297 0 0 0 0 0
t 0 0 0 0 0 0 222 218 330 65 38 129 5 378 260 0 0 0 0 0
|
e_gw1.392.16.1_M0660_1.02_CISBP_shift6 (e_gw1.392.16.1_M0660_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/e_gw1.392.16.1_M0660_1.02_CISBP_shift6.png) |
0.755 |
0.617 |
2.372 |
0.592 |
0.899 |
1.666 |
0.907 |
49 |
15 |
27 |
12 |
25 |
41 |
29 |
28.286 |
31 |
; oligos_5-7nt_m4 versus e_gw1.392.16.1_M0660_1.02_CISBP; m=18/30; ncol2=9; w=9; offset=0; strand=D; shift=6; score=28.2857; ------vrwAAaGyd-----
; cor=0.755; Ncor=0.617; logoDP=2.372; NIcor=0.592; NsEucl=0.899; SSD=1.666; NSW=0.907; rcor=49; rNcor=15; rlogoDP=27; rNIcor=12; rNsEucl=25; rSSD=41; rNSW=29; rank_mean=28.286; match_rank=31
a 0 0 0 0 0 0 25 33 48 86 93 67 7 14 28 0 0 0 0 0
c 0 0 0 0 0 0 26 19 7 6 3 15 3 28 16 0 0 0 0 0
g 0 0 0 0 0 0 26 26 12 2 0 5 90 20 30 0 0 0 0 0
t 0 0 0 0 0 0 23 22 33 6 4 13 0 38 26 0 0 0 0 0
|
SEP3_MA0563.1_JASPAR_rc_shift4 (SEP3_MA0563.1_JASPAR_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SEP3_MA0563.1_JASPAR_rc_shift4.png) |
0.786 |
0.544 |
1.330 |
-0.055 |
0.903 |
1.529 |
0.915 |
34 |
26 |
38 |
45 |
18 |
28 |
17 |
29.429 |
33 |
; oligos_5-7nt_m4 versus SEP3_MA0563.1_JASPAR_rc; m=19/30; ncol2=11; w=9; offset=-2; strand=R; shift=4; score=29.4286; ----CCAAAAAwrGa-----
; cor=0.786; Ncor=0.544; logoDP=1.330; NIcor=-0.055; NsEucl=0.903; SSD=1.529; NSW=0.915; rcor=34; rNcor=26; rlogoDP=38; rNIcor=45; rNsEucl=18; rSSD=28; rNSW=17; rank_mean=29.429; match_rank=33
a 0 0 0 0 29 3 114 117 150 126 105 73 51 15 60 0 0 0 0 0
c 0 0 0 0 114 138 22 24 0 5 5 0 1 5 29 0 0 0 0 0
g 0 0 0 0 7 0 3 0 0 0 28 0 97 111 37 0 0 0 0 0
t 0 0 0 0 0 9 11 9 0 19 12 77 1 19 24 0 0 0 0 0
|
SED_M01128_TRANSFAC_rc_shift8 (SED_M01128_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SED_M01128_TRANSFAC_rc_shift8.png) |
0.793 |
0.595 |
0.335 |
-0.116 |
0.902 |
1.545 |
0.914 |
29 |
16 |
48 |
47 |
19 |
30 |
21 |
30.000 |
35 |
; oligos_5-7nt_m4 versus SED_M01128_TRANSFAC_rc; m=20/30; ncol2=10; w=9; offset=2; strand=R; shift=8; score= 30; --------dAAAGbddrb--
; cor=0.793; Ncor=0.595; logoDP=0.335; NIcor=-0.116; NsEucl=0.902; SSD=1.545; NSW=0.914; rcor=29; rNcor=16; rlogoDP=48; rNIcor=47; rNsEucl=19; rSSD=30; rNSW=21; rank_mean=30.000; match_rank=35
a 0 0 0 0 0 0 0 0 4 8 8 8 0 0 2 2 5 0 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 1 0 3 0 0
g 0 0 0 0 0 0 0 0 2 0 0 0 8 4 3 2 3 2 0 0
t 0 0 0 0 0 0 0 0 2 0 0 0 0 2 2 3 0 3 0 0
|
TATA_BINDING_TBP_1vtl_E_3D-footprint_shift5 (TATA_BINDING_TBP_1vtl_E_3D-footprint) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TATA_BINDING_TBP_1vtl_E_3D-footprint_shift5.png) |
0.794 |
0.463 |
3.216 |
0.421 |
0.879 |
1.436 |
0.897 |
28 |
44 |
23 |
36 |
37 |
23 |
36 |
32.429 |
36 |
; oligos_5-7nt_m4 versus TATA_BINDING_TBP_1vtl_E_3D-footprint; m=21/30; ncol2=8; w=7; offset=-1; strand=D; shift=5; score=32.4286; -----TATAAaAG-------
; cor=0.794; Ncor=0.463; logoDP=3.216; NIcor=0.421; NsEucl=0.879; SSD=1.436; NSW=0.897; rcor=28; rNcor=44; rlogoDP=23; rNIcor=36; rNsEucl=37; rSSD=23; rNSW=36; rank_mean=32.429; match_rank=36
a 0 0 0 0 0 0 96 0 96 72 60 96 12 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 12 12 0 12 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 12 12 0 72 0 0 0 0 0 0 0
t 0 0 0 0 0 96 0 96 0 0 12 0 0 0 0 0 0 0 0 0
|
SVP_MA0555.1_JASPAR_shift0 (SVP_MA0555.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SVP_MA0555.1_JASPAR_shift0.png) |
0.777 |
0.427 |
4.363 |
0.409 |
0.910 |
1.956 |
0.911 |
39 |
52 |
19 |
37 |
10 |
48 |
26 |
33.000 |
37 |
; oligos_5-7nt_m4 versus SVP_MA0555.1_JASPAR; m=22/30; ncol2=20; w=11; offset=-6; strand=D; shift=0; score= 33; mwwwCCaAAAAwGGAAAraw
; cor=0.777; Ncor=0.427; logoDP=4.363; NIcor=0.409; NsEucl=0.910; SSD=1.956; NSW=0.911; rcor=39; rNcor=52; rlogoDP=19; rNIcor=37; rNsEucl=10; rSSD=48; rNSW=26; rank_mean=33.000; match_rank=37
a 28 28 28 33 7 3 58 67 86 77 78 34 16 0 71 84 77 34 50 38
c 24 11 1 16 85 79 16 5 0 1 8 10 0 0 10 2 7 8 16 21
g 21 8 10 11 0 1 7 8 0 2 3 14 74 92 0 2 2 39 5 3
t 19 45 53 32 0 9 11 12 6 12 3 34 2 0 11 4 6 11 21 30
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc_shift5.png) |
0.826 |
0.482 |
0.351 |
-0.171 |
0.884 |
1.316 |
0.906 |
17 |
37 |
47 |
50 |
35 |
18 |
30 |
33.429 |
40 |
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn9_B_3D-footprint_rc; m=23/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=33.4286; -----TACAAaAG-------
; cor=0.826; Ncor=0.482; logoDP=0.351; NIcor=-0.171; NsEucl=0.884; SSD=1.316; NSW=0.906; rcor=17; rNcor=37; rlogoDP=47; rNIcor=50; rNsEucl=35; rSSD=18; rNSW=30; rank_mean=33.429; match_rank=40
a 0 0 0 0 0 0 96 0 96 96 61 96 8 0 0 0 0 0 0 0
c 0 0 0 0 0 10 0 88 0 0 8 0 8 0 0 0 0 0 0 0
g 0 0 0 0 0 8 0 0 0 0 17 0 72 0 0 0 0 0 0 0
t 0 0 0 0 0 78 0 8 0 0 10 0 8 0 0 0 0 0 0 0
|
_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift5 (_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1vol_AB_3D-footprint_rc_shift5.png) |
0.792 |
0.462 |
1.166 |
-0.021 |
0.877 |
1.474 |
0.895 |
30 |
45 |
42 |
41 |
38 |
25 |
37 |
36.857 |
45 |
; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_AB_3D-footprint_rc; m=24/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=36.8571; -----TATAAaAG-------
; cor=0.792; Ncor=0.462; logoDP=1.166; NIcor=-0.021; NsEucl=0.877; SSD=1.474; NSW=0.895; rcor=30; rNcor=45; rlogoDP=42; rNIcor=41; rNsEucl=38; rSSD=25; rNSW=37; rank_mean=36.857; match_rank=45
a 0 0 0 0 0 0 96 0 96 82 57 96 13 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 13 13 0 15 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 1 13 0 68 0 0 0 0 0 0 0
t 0 0 0 0 0 96 0 96 0 0 13 0 0 0 0 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift5.png) |
0.787 |
0.459 |
1.137 |
-0.013 |
0.877 |
1.481 |
0.894 |
33 |
48 |
43 |
40 |
39 |
26 |
38 |
38.143 |
46 |
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc; m=25/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=38.1429; -----AATAAaAG-------
; cor=0.787; Ncor=0.459; logoDP=1.137; NIcor=-0.013; NsEucl=0.877; SSD=1.481; NSW=0.894; rcor=33; rNcor=48; rlogoDP=43; rNIcor=40; rNsEucl=39; rSSD=26; rNSW=38; rank_mean=38.143; match_rank=46
a 0 0 0 0 0 96 96 0 96 74 53 96 10 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 10 10 0 12 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 12 21 0 74 0 0 0 0 0 0 0
t 0 0 0 0 0 0 0 96 0 0 12 0 0 0 0 0 0 0 0 0
|
_TATA_BINDING_TBP_1vol_B_3D-footprint_rc_shift5 (_TATA_BINDING_TBP_1vol_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/_TATA_BINDING_TBP_1vol_B_3D-footprint_rc_shift5.png) |
0.787 |
0.459 |
1.174 |
-0.024 |
0.876 |
1.495 |
0.893 |
32 |
47 |
41 |
42 |
40 |
27 |
39 |
38.286 |
47 |
; oligos_5-7nt_m4 versus _TATA_BINDING_TBP_1vol_B_3D-footprint_rc; m=26/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=38.2857; -----TATAAaAG-------
; cor=0.787; Ncor=0.459; logoDP=1.174; NIcor=-0.024; NsEucl=0.876; SSD=1.495; NSW=0.893; rcor=32; rNcor=47; rlogoDP=41; rNIcor=42; rNsEucl=40; rSSD=27; rNSW=39; rank_mean=38.286; match_rank=47
a 0 0 0 0 0 0 96 0 96 82 54 96 13 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 13 13 0 13 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 13 0 68 0 0 0 0 0 0 0
t 0 0 0 0 0 96 0 96 0 1 16 0 2 0 0 0 0 0 0 0
|
AG_M01133_TRANSFAC_rc_shift2 (AG_M01133_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AG_M01133_TRANSFAC_rc_shift2.png) |
0.757 |
0.490 |
0.922 |
-0.108 |
0.907 |
2.078 |
0.906 |
47 |
35 |
45 |
46 |
15 |
49 |
32 |
38.429 |
48 |
; oligos_5-7nt_m4 versus AG_M01133_TRANSFAC_rc; m=27/30; ncol2=17; w=11; offset=-4; strand=R; shift=2; score=38.4286; --TwcCwAAAAwGGwAAwt-
; cor=0.757; Ncor=0.490; logoDP=0.922; NIcor=-0.108; NsEucl=0.907; SSD=2.078; NSW=0.906; rcor=47; rNcor=35; rlogoDP=45; rNIcor=46; rNsEucl=15; rSSD=49; rNSW=32; rank_mean=38.429; match_rank=48
a 0 0 1 6 3 0 8 11 13 10 10 6 0 0 6 10 9 6 2 0
c 0 0 1 0 7 11 1 0 0 0 0 0 0 0 2 0 1 0 2 0
g 0 0 0 2 1 0 0 0 0 0 0 0 12 13 1 1 1 3 2 0
t 0 0 11 5 2 2 4 2 0 3 3 7 1 0 4 2 2 4 7 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc_shift5.png) |
0.771 |
0.450 |
2.005 |
0.099 |
0.873 |
1.587 |
0.887 |
43 |
51 |
32 |
38 |
44 |
35 |
43 |
40.857 |
49 |
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint_rc; m=28/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=40.8571; -----TTTAAAAG-------
; cor=0.771; Ncor=0.450; logoDP=2.005; NIcor=0.099; NsEucl=0.873; SSD=1.587; NSW=0.887; rcor=43; rNcor=51; rlogoDP=32; rNIcor=38; rNsEucl=44; rSSD=35; rNSW=43; rank_mean=40.857; match_rank=49
a 0 0 0 0 0 0 0 9 96 78 72 96 8 0 0 0 0 0 0 0
c 0 0 0 0 0 8 0 0 0 8 8 0 8 0 0 0 0 0 0 0
g 0 0 0 0 0 1 0 0 0 8 8 0 69 0 0 0 0 0 0 0
t 0 0 0 0 0 87 96 87 0 2 8 0 11 0 0 0 0 0 0 0
|
TATA_BINDING__1vto_B_3D-footprint_rc_shift5 (TATA_BINDING__1vto_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TATA_BINDING__1vto_B_3D-footprint_rc_shift5.png) |
0.776 |
0.453 |
1.174 |
-0.029 |
0.872 |
1.609 |
0.885 |
40 |
49 |
39 |
44 |
45 |
36 |
44 |
42.429 |
50 |
; oligos_5-7nt_m4 versus TATA_BINDING__1vto_B_3D-footprint_rc; m=29/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=42.4286; -----TATAAaAg-------
; cor=0.776; Ncor=0.453; logoDP=1.174; NIcor=-0.029; NsEucl=0.872; SSD=1.609; NSW=0.885; rcor=40; rNcor=49; rlogoDP=39; rNIcor=44; rNsEucl=45; rSSD=36; rNSW=44; rank_mean=42.429; match_rank=50
a 0 0 0 0 0 0 96 0 96 96 57 96 13 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0 0
t 0 0 0 0 0 96 0 96 0 0 13 0 16 0 0 0 0 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift5 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc_shift5.png) |
0.771 |
0.450 |
1.174 |
-0.028 |
0.871 |
1.633 |
0.883 |
42 |
50 |
40 |
43 |
47 |
37 |
46 |
43.571 |
51 |
; oligos_5-7nt_m4 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qne_B_3D-footprint_rc; m=30/30; ncol2=8; w=7; offset=-1; strand=R; shift=5; score=43.5714; -----TATAAaAg-------
; cor=0.771; Ncor=0.450; logoDP=1.174; NIcor=-0.028; NsEucl=0.871; SSD=1.633; NSW=0.883; rcor=42; rNcor=50; rlogoDP=40; rNIcor=43; rNsEucl=47; rSSD=37; rNSW=46; rank_mean=43.571; match_rank=51
a 0 0 0 0 0 0 96 0 96 96 54 96 16 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 13 0 54 0 0 0 0 0 0 0
t 0 0 0 0 0 96 0 96 0 0 16 0 13 0 0 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m3_shift0 (oligos_5-7nt_m3) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m3_shift0.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m3; m=0 (reference); ncol1=11; shift=0; ncol=12; ggACGGGACgr-
; Alignment reference
a 18 17 67 4 2 5 2 74 4 18 22 0
c 18 18 3 59 3 1 2 0 61 18 16 0
g 25 29 1 7 68 65 67 0 5 28 26 0
t 14 11 4 5 2 4 4 1 5 11 11 0
|
LjT20A21.20.nc_M1663_1.02_CISBP_shift4 (LjT20A21.20.nc_M1663_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LjT20A21.20.nc_M1663_1.02_CISBP_shift4.png) |
0.829 |
0.484 |
4.858 |
0.460 |
0.880 |
1.415 |
0.899 |
15 |
36 |
13 |
32 |
36 |
22 |
35 |
27.000 |
24 |
; oligos_5-7nt_m3 versus LjT20A21.20.nc_M1663_1.02_CISBP; m=1/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 27; ----GGGACCAy
; cor=0.829; Ncor=0.484; logoDP=4.858; NIcor=0.460; NsEucl=0.880; SSD=1.415; NSW=0.899; rcor=15; rNcor=36; rlogoDP=13; rNIcor=32; rNsEucl=36; rSSD=22; rNSW=35; rank_mean=27.000; match_rank=24
a 0 0 0 0 5 0 0 93 0 0 88 6
c 0 0 0 0 0 0 0 7 100 100 4 59
g 0 0 0 0 75 100 100 0 0 0 8 6
t 0 0 0 0 20 0 0 0 0 0 0 29
|
TCP5_M1650_1.02_CISBP_shift4 (TCP5_M1650_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TCP5_M1650_1.02_CISBP_shift4.png) |
0.843 |
0.492 |
6.054 |
0.475 |
0.873 |
1.582 |
0.887 |
12 |
32 |
9 |
27 |
42 |
33 |
41 |
28.000 |
29 |
; oligos_5-7nt_m3 versus TCP5_M1650_1.02_CISBP; m=2/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 28; ----GGGACCAY
; cor=0.843; Ncor=0.492; logoDP=6.054; NIcor=0.475; NsEucl=0.873; SSD=1.582; NSW=0.887; rcor=12; rNcor=32; rlogoDP=9; rNIcor=27; rNsEucl=42; rSSD=33; rNSW=41; rank_mean=28.000; match_rank=29
a 0 0 0 0 0 0 0 100 0 0 100 0
c 0 0 0 0 0 0 0 0 100 100 0 74
g 0 0 0 0 100 100 100 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 0 0 26
|
XM_002866361.1_M1655_1.02_CISBP_shift4 (XM_002866361.1_M1655_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/XM_002866361.1_M1655_1.02_CISBP_shift4.png) |
0.843 |
0.492 |
6.054 |
0.475 |
0.873 |
1.582 |
0.887 |
12 |
32 |
9 |
27 |
42 |
33 |
41 |
28.000 |
30 |
; oligos_5-7nt_m3 versus XM_002866361.1_M1655_1.02_CISBP; m=3/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score= 28; ----GGGACCAC
; cor=0.843; Ncor=0.492; logoDP=6.054; NIcor=0.475; NsEucl=0.873; SSD=1.582; NSW=0.887; rcor=12; rNcor=32; rlogoDP=9; rNIcor=27; rNsEucl=42; rSSD=33; rNSW=41; rank_mean=28.000; match_rank=30
a 0 0 0 0 0 0 0 100 0 0 100 0
c 0 0 0 0 0 0 0 0 100 100 0 100
g 0 0 0 0 100 100 100 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 0 0 0
|
TCP5_MA1067.1_JASPAR_shift4 (TCP5_MA1067.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TCP5_MA1067.1_JASPAR_shift4.png) |
0.843 |
0.492 |
5.831 |
0.475 |
0.874 |
1.551 |
0.889 |
14 |
34 |
11 |
29 |
41 |
32 |
40 |
28.714 |
32 |
; oligos_5-7nt_m3 versus TCP5_MA1067.1_JASPAR; m=4/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=28.7143; ----GGGACCAY
; cor=0.843; Ncor=0.492; logoDP=5.831; NIcor=0.475; NsEucl=0.874; SSD=1.551; NSW=0.889; rcor=14; rNcor=34; rlogoDP=11; rNIcor=29; rNsEucl=41; rSSD=32; rNSW=40; rank_mean=28.714; match_rank=32
a 0 0 0 0 2 2 2 995 2 2 995 2
c 0 0 0 0 2 2 2 2 995 995 2 745
g 0 0 0 0 993 995 995 2 2 2 2 2
t 0 0 0 0 2 2 2 2 2 2 2 250
|
TCP4_MA1035.1_JASPAR_shift4 (TCP4_MA1035.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TCP4_MA1035.1_JASPAR_shift4.png) |
0.800 |
0.467 |
4.439 |
0.436 |
0.871 |
1.641 |
0.883 |
23 |
41 |
17 |
33 |
48 |
38 |
47 |
35.286 |
43 |
; oligos_5-7nt_m3 versus TCP4_MA1035.1_JASPAR; m=5/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=35.2857; ----GGGACCAC
; cor=0.800; Ncor=0.467; logoDP=4.439; NIcor=0.436; NsEucl=0.871; SSD=1.641; NSW=0.883; rcor=23; rNcor=41; rlogoDP=17; rNIcor=33; rNsEucl=48; rSSD=38; rNSW=47; rank_mean=35.286; match_rank=43
a 0 0 0 0 112 1 1 831 1 1 997 1
c 0 0 0 0 1 1 1 167 998 998 1 996
g 0 0 0 0 775 998 998 1 1 1 1 1
t 0 0 0 0 112 1 1 1 1 1 1 1
|
MEE35_M1646_1.02_CISBP_shift4 (MEE35_M1646_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/MEE35_M1646_1.02_CISBP_shift4.png) |
0.800 |
0.467 |
4.523 |
0.436 |
0.870 |
1.655 |
0.882 |
24 |
42 |
16 |
34 |
50 |
39 |
50 |
36.429 |
44 |
; oligos_5-7nt_m3 versus MEE35_M1646_1.02_CISBP; m=6/6; ncol2=8; w=7; offset=4; strand=D; shift=4; score=36.4286; ----GGGACCAC
; cor=0.800; Ncor=0.467; logoDP=4.523; NIcor=0.436; NsEucl=0.870; SSD=1.655; NSW=0.882; rcor=24; rNcor=42; rlogoDP=16; rNIcor=34; rNsEucl=50; rSSD=39; rNSW=50; rank_mean=36.429; match_rank=44
a 0 0 0 0 11 0 0 83 0 0 100 0
c 0 0 0 0 0 0 0 17 100 100 0 100
g 0 0 0 0 78 100 100 0 0 0 0 0
t 0 0 0 0 11 0 0 0 0 0 0 0
|