Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m2_shift3 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift3.png) |
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  |
  |
  |
; oligos_5-7nt_m2; m=0 (reference); ncol1=12; shift=3; ncol=17; ---waAAAATATCww--
; Alignment reference
a 0 0 0 30 24 63 69 71 71 2 66 4 5 20 22 0 0
c 0 0 0 8 17 3 0 0 1 2 2 2 54 12 14 0 0
g 0 0 0 12 18 5 2 2 1 1 1 2 4 14 16 0 0
t 0 0 0 24 15 3 3 1 1 69 5 66 11 28 22 0 0
|
RVE1_RVE1_ArabidopsisPBM_shift5 (RVE1_RVE1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RVE1_RVE1_ArabidopsisPBM_shift5.png) |
0.946 |
0.788 |
7.322 |
0.778 |
0.946 |
0.577 |
0.971 |
2 |
1 |
8 |
1 |
1 |
3 |
1 |
2.429 |
1 |
; oligos_5-7nt_m2 versus RVE1_RVE1_ArabidopsisPBM; m=1/13; ncol2=10; w=10; offset=2; strand=D; shift=5; score= 2.4286; -----wAAATATCTk--
; cor=0.946; Ncor=0.788; logoDP=7.322; NIcor=0.778; NsEucl=0.946; SSD=0.577; NSW=0.971; rcor=2; rNcor=1; rlogoDP=8; rNIcor=1; rNsEucl=1; rSSD=3; rNSW=1; rank_mean=2.429; match_rank=1
a 0 0 0 0 0 65 92 92 98 7 99 0 1 2 9 0 0
c 0 0 0 0 0 4 0 0 0 0 1 1 98 10 20 0 0
g 0 0 0 0 0 6 2 7 1 4 0 0 0 4 28 0 0
t 0 0 0 0 0 25 6 1 1 89 0 99 1 84 43 0 0
|
CCA1_CCA1_ArabidopsisPBM_shift5 (CCA1_CCA1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_CCA1_ArabidopsisPBM_shift5.png) |
0.943 |
0.786 |
7.931 |
0.771 |
0.943 |
0.645 |
0.968 |
3 |
2 |
5 |
2 |
2 |
5 |
3 |
3.143 |
2 |
; oligos_5-7nt_m2 versus CCA1_CCA1_ArabidopsisPBM; m=2/13; ncol2=10; w=10; offset=2; strand=D; shift=5; score= 3.1429; -----aAAATATCTt--
; cor=0.943; Ncor=0.786; logoDP=7.931; NIcor=0.771; NsEucl=0.943; SSD=0.645; NSW=0.968; rcor=3; rNcor=2; rlogoDP=5; rNIcor=2; rNsEucl=2; rSSD=5; rNSW=3; rank_mean=3.143; match_rank=2
a 0 0 0 0 0 60 93 96 98 4 100 0 0 3 17 0 0
c 0 0 0 0 0 8 0 0 0 0 0 1 100 9 21 0 0
g 0 0 0 0 0 10 1 4 2 0 0 0 0 1 11 0 0
t 0 0 0 0 0 22 6 0 0 96 0 99 0 87 51 0 0
|
CCA1_MA0972.1_JASPAR_shift6 (CCA1_MA0972.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_MA0972.1_JASPAR_shift6.png) |
0.960 |
0.640 |
7.692 |
0.631 |
0.939 |
0.470 |
0.971 |
1 |
8 |
6 |
5 |
3 |
1 |
2 |
3.714 |
3 |
; oligos_5-7nt_m2 versus CCA1_MA0972.1_JASPAR; m=3/13; ncol2=8; w=8; offset=3; strand=D; shift=6; score= 3.7143; ------AAATATCT---
; cor=0.960; Ncor=0.640; logoDP=7.692; NIcor=0.631; NsEucl=0.939; SSD=0.470; NSW=0.971; rcor=1; rNcor=8; rlogoDP=6; rNIcor=5; rNsEucl=3; rSSD=1; rNSW=2; rank_mean=3.714; match_rank=3
a 0 0 0 0 0 0 934 960 985 35 992 1 5 21 0 0 0
c 0 0 0 0 0 0 1 1 4 0 5 12 991 91 0 0 0
g 0 0 0 0 0 0 10 37 10 5 1 1 0 14 0 0 0
t 0 0 0 0 0 0 54 2 1 960 2 986 4 874 0 0 0
|
CCA1_M01819_TRANSFAC_shift0 (CCA1_M01819_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_M01819_TRANSFAC_shift0.png) |
0.901 |
0.636 |
8.811 |
0.624 |
0.933 |
1.295 |
0.946 |
5 |
9 |
1 |
6 |
4 |
17 |
6 |
6.857 |
4 |
; oligos_5-7nt_m2 versus CCA1_M01819_TRANSFAC; m=4/13; ncol2=17; w=12; offset=-3; strand=D; shift=0; score= 6.8571; smharAAAAwATCTAar
; cor=0.901; Ncor=0.636; logoDP=8.811; NIcor=0.624; NsEucl=0.933; SSD=1.295; NSW=0.946; rcor=5; rNcor=9; rlogoDP=1; rNIcor=6; rNsEucl=4; rSSD=17; rNSW=6; rank_mean=6.857; match_rank=4
a 0 3 2 3 3 6 7 7 7 3 7 0 0 1 5 3 2
c 4 3 2 1 0 0 0 0 0 0 0 0 7 0 0 1 1
g 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 2
t 0 0 2 1 1 0 0 0 0 4 0 7 0 6 1 1 1
|
EPR1_M1317_1.02_CISBP_rc_shift5 (EPR1_M1317_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/EPR1_M1317_1.02_CISBP_rc_shift5.png) |
0.886 |
0.665 |
2.039 |
0.120 |
0.922 |
0.987 |
0.945 |
7 |
5 |
29 |
33 |
6 |
8 |
7 |
13.571 |
8 |
; oligos_5-7nt_m2 versus EPR1_M1317_1.02_CISBP_rc; m=5/13; ncol2=9; w=9; offset=2; strand=R; shift=5; score=13.5714; -----waAaTATCt---
; cor=0.886; Ncor=0.665; logoDP=2.039; NIcor=0.120; NsEucl=0.922; SSD=0.987; NSW=0.945; rcor=7; rNcor=5; rlogoDP=29; rNIcor=33; rNsEucl=6; rSSD=8; rNSW=7; rank_mean=13.571; match_rank=8
a 0 0 0 0 0 35 52 68 67 19 98 1 2 17 0 0 0
c 0 0 0 0 0 16 9 9 8 2 0 1 92 19 0 0 0
g 0 0 0 0 0 20 15 9 18 7 1 0 1 12 0 0 0
t 0 0 0 0 0 29 24 14 7 72 1 98 5 52 0 0 0
|
PK08316.1_M1306_1.02_CISBP_shift5 (PK08316.1_M1306_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK08316.1_M1306_1.02_CISBP_shift5.png) |
0.846 |
0.705 |
1.861 |
0.662 |
0.914 |
1.486 |
0.926 |
14 |
3 |
35 |
3 |
9 |
26 |
11 |
14.429 |
10 |
; oligos_5-7nt_m2 versus PK08316.1_M1306_1.02_CISBP; m=6/13; ncol2=10; w=10; offset=2; strand=D; shift=5; score=14.4286; -----wwaawATCtw--
; cor=0.846; Ncor=0.705; logoDP=1.861; NIcor=0.662; NsEucl=0.914; SSD=1.486; NSW=0.926; rcor=14; rNcor=3; rlogoDP=35; rNIcor=3; rNsEucl=9; rSSD=26; rNSW=11; rank_mean=14.429; match_rank=10
a 0 0 0 0 0 29 42 52 56 26 88 10 9 20 26 0 0
c 0 0 0 0 0 20 15 17 12 4 0 5 80 21 22 0 0
g 0 0 0 0 0 23 17 16 20 12 5 5 7 18 24 0 0
t 0 0 0 0 0 28 26 15 12 58 7 80 4 41 28 0 0
|
PK02532.1_M1303_1.02_CISBP_rc_shift6 (PK02532.1_M1303_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK02532.1_M1303_1.02_CISBP_rc_shift6.png) |
0.898 |
0.673 |
1.947 |
-0.037 |
0.918 |
1.077 |
0.940 |
6 |
4 |
31 |
39 |
7 |
9 |
8 |
14.857 |
12 |
; oligos_5-7nt_m2 versus PK02532.1_M1303_1.02_CISBP_rc; m=7/13; ncol2=9; w=9; offset=3; strand=R; shift=6; score=14.8571; ------wAATATCTn--
; cor=0.898; Ncor=0.673; logoDP=1.947; NIcor=-0.037; NsEucl=0.918; SSD=1.077; NSW=0.940; rcor=6; rNcor=4; rlogoDP=31; rNIcor=39; rNsEucl=7; rSSD=9; rNSW=8; rank_mean=14.857; match_rank=12
a 0 0 0 0 0 0 50 100 100 0 100 0 0 0 25 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 100 0 25 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0
t 0 0 0 0 0 0 50 0 0 100 0 100 0 100 25 0 0
|
LOC_Os08g06110_M1365_1.02_CISBP_rc_shift6 (LOC_Os08g06110_M1365_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LOC_Os08g06110_M1365_1.02_CISBP_rc_shift6.png) |
0.878 |
0.659 |
0.509 |
-0.090 |
0.924 |
0.924 |
0.949 |
8 |
7 |
39 |
40 |
5 |
7 |
5 |
15.857 |
13 |
; oligos_5-7nt_m2 versus LOC_Os08g06110_M1365_1.02_CISBP_rc; m=8/13; ncol2=9; w=9; offset=3; strand=R; shift=6; score=15.8571; ------aaaTATCtw--
; cor=0.878; Ncor=0.659; logoDP=0.509; NIcor=-0.090; NsEucl=0.924; SSD=0.924; NSW=0.949; rcor=8; rNcor=7; rlogoDP=39; rNIcor=40; rNsEucl=5; rSSD=7; rNSW=5; rank_mean=15.857; match_rank=13
a 0 0 0 0 0 0 45 57 62 19 99 0 1 13 25 0 0
c 0 0 0 0 0 0 12 16 9 1 0 1 96 19 24 0 0
g 0 0 0 0 0 0 21 13 22 8 0 0 0 12 23 0 0
t 0 0 0 0 0 0 22 14 7 72 1 99 3 56 28 0 0
|
RVE1_RVE1_2_ArabidopsisPBM_shift6 (RVE1_RVE1_2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RVE1_RVE1_2_ArabidopsisPBM_shift6.png) |
0.787 |
0.545 |
2.522 |
0.520 |
0.903 |
1.538 |
0.915 |
28 |
12 |
26 |
9 |
10 |
28 |
14 |
18.143 |
16 |
; oligos_5-7nt_m2 versus RVE1_RVE1_2_ArabidopsisPBM; m=9/13; ncol2=10; w=9; offset=3; strand=D; shift=6; score=18.1429; ------smatATCwaw-
; cor=0.787; Ncor=0.545; logoDP=2.522; NIcor=0.520; NsEucl=0.903; SSD=1.538; NSW=0.915; rcor=28; rNcor=12; rlogoDP=26; rNIcor=9; rNsEucl=10; rSSD=28; rNSW=14; rank_mean=18.143; match_rank=16
a 0 0 0 0 0 0 20 54 65 23 91 3 6 29 61 50 0
c 0 0 0 0 0 0 31 31 9 3 4 3 89 20 16 16 0
g 0 0 0 0 0 0 29 4 16 15 3 3 4 5 13 6 0
t 0 0 0 0 0 0 20 11 10 59 2 91 1 46 10 28 0
|
HMGIY_M01800_TRANSFAC_rc_shift5 (HMGIY_M01800_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HMGIY_M01800_TRANSFAC_rc_shift5.png) |
0.878 |
0.439 |
2.003 |
0.049 |
0.890 |
0.875 |
0.927 |
9 |
32 |
30 |
35 |
17 |
6 |
10 |
19.857 |
19 |
; oligos_5-7nt_m2 versus HMGIY_M01800_TRANSFAC_rc; m=10/13; ncol2=6; w=6; offset=2; strand=R; shift=5; score=19.8571; -----AAAWww------
; cor=0.878; Ncor=0.439; logoDP=2.003; NIcor=0.049; NsEucl=0.890; SSD=0.875; NSW=0.927; rcor=9; rNcor=32; rlogoDP=30; rNIcor=35; rNsEucl=17; rSSD=6; rNSW=10; rank_mean=19.857; match_rank=19
a 0 0 0 0 0 9 13 11 10 7 9 0 0 0 0 0 0
c 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
g 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0
t 0 0 0 0 0 1 1 3 4 6 5 0 0 0 0 0 0
|
HMGA_M0118_1.02_CISBP_shift1 (HMGA_M0118_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HMGA_M0118_1.02_CISBP_shift1.png) |
0.802 |
0.401 |
1.878 |
0.399 |
0.889 |
1.200 |
0.914 |
23 |
41 |
33 |
21 |
18 |
13 |
15 |
23.429 |
25 |
; oligos_5-7nt_m2 versus HMGA_M0118_1.02_CISBP; m=11/13; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=23.4286; -ssrrwAAwt-------
; cor=0.802; Ncor=0.401; logoDP=1.878; NIcor=0.399; NsEucl=0.889; SSD=1.200; NSW=0.914; rcor=23; rNcor=41; rlogoDP=33; rNIcor=21; rNsEucl=18; rSSD=13; rNSW=15; rank_mean=23.429; match_rank=25
a 0 24 21 35 33 41 71 89 45 21 0 0 0 0 0 0 0
c 0 27 31 18 18 4 5 0 1 18 0 0 0 0 0 0 0
g 0 26 25 30 25 21 0 4 4 10 0 0 0 0 0 0 0
t 0 23 23 17 24 34 24 7 50 51 0 0 0 0 0 0 0
|
PRH_M1167_1.02_CISBP_shift8 (PRH_M1167_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PRH_M1167_1.02_CISBP_shift8.png) |
0.755 |
0.406 |
5.334 |
0.412 |
0.859 |
1.944 |
0.861 |
40 |
40 |
15 |
17 |
39 |
39 |
40 |
32.857 |
38 |
; oligos_5-7nt_m2 versus PRH_M1167_1.02_CISBP; m=12/13; ncol2=8; w=7; offset=5; strand=D; shift=8; score=32.8571; --------ATATATwA-
; cor=0.755; Ncor=0.406; logoDP=5.334; NIcor=0.412; NsEucl=0.859; SSD=1.944; NSW=0.861; rcor=40; rNcor=40; rlogoDP=15; rNIcor=17; rNsEucl=39; rSSD=39; rNSW=40; rank_mean=32.857; match_rank=38
a 0 0 0 0 0 0 0 0 100 0 100 0 100 14 50 80 0
c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 100 0 100 0 86 50 20 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc_shift2 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc_shift2.png) |
0.756 |
0.407 |
1.807 |
-0.009 |
0.865 |
1.783 |
0.873 |
37 |
38 |
36 |
36 |
33 |
33 |
35 |
35.429 |
41 |
; oligos_5-7nt_m2 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint_rc; m=13/13; ncol2=8; w=7; offset=-1; strand=R; shift=2; score=35.4286; --TATAAaAt-------
; cor=0.756; Ncor=0.407; logoDP=1.807; NIcor=-0.009; NsEucl=0.865; SSD=1.783; NSW=0.873; rcor=37; rNcor=38; rlogoDP=36; rNIcor=36; rNsEucl=33; rSSD=33; rNSW=35; rank_mean=35.429; match_rank=41
a 0 0 0 96 0 96 96 54 96 13 0 0 0 0 0 0 0
c 0 0 0 0 0 0 0 13 0 16 0 0 0 0 0 0 0
g 0 0 0 0 0 0 0 13 0 13 0 0 0 0 0 0 0
t 0 0 96 0 96 0 0 16 0 54 0 0 0 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m1_shift3 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift3.png) |
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; oligos_5-7nt_m1; m=0 (reference); ncol1=10; shift=3; ncol=17; ---waaAAATAtw----
; Alignment reference
a 0 0 0 52 55 79 163 163 163 0 163 38 54 0 0 0 0
c 0 0 0 36 36 30 0 0 0 0 0 33 35 0 0 0 0
g 0 0 0 21 35 25 0 0 0 0 0 33 31 0 0 0 0
t 0 0 0 54 37 29 0 0 0 163 0 59 43 0 0 0 0
|
CCA1_CCA1_ArabidopsisPBM_shift5 (CCA1_CCA1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_CCA1_ArabidopsisPBM_shift5.png) |
0.851 |
0.567 |
8.375 |
0.540 |
0.895 |
1.404 |
0.912 |
12 |
10 |
2 |
7 |
12 |
21 |
16 |
11.429 |
5 |
; oligos_5-7nt_m1 versus CCA1_CCA1_ArabidopsisPBM; m=1/14; ncol2=10; w=8; offset=2; strand=D; shift=5; score=11.4286; -----aAAATATCTt--
; cor=0.851; Ncor=0.567; logoDP=8.375; NIcor=0.540; NsEucl=0.895; SSD=1.404; NSW=0.912; rcor=12; rNcor=10; rlogoDP=2; rNIcor=7; rNsEucl=12; rSSD=21; rNSW=16; rank_mean=11.429; match_rank=5
a 0 0 0 0 0 60 93 96 98 4 100 0 0 3 17 0 0
c 0 0 0 0 0 8 0 0 0 0 0 1 100 9 21 0 0
g 0 0 0 0 0 10 1 4 2 0 0 0 0 1 11 0 0
t 0 0 0 0 0 22 6 0 0 96 0 99 0 87 51 0 0
|
Medtr8g106590.1_M0145_1.02_CISBP_shift5 (Medtr8g106590.1_M0145_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/Medtr8g106590.1_M0145_1.02_CISBP_shift5.png) |
0.825 |
0.660 |
5.248 |
0.635 |
0.900 |
1.289 |
0.919 |
18 |
6 |
16 |
4 |
11 |
16 |
12 |
11.857 |
6 |
; oligos_5-7nt_m1 versus Medtr8g106590.1_M0145_1.02_CISBP; m=2/14; ncol2=8; w=8; offset=2; strand=D; shift=5; score=11.8571; -----AAAWTAAT----
; cor=0.825; Ncor=0.660; logoDP=5.248; NIcor=0.635; NsEucl=0.900; SSD=1.289; NSW=0.919; rcor=18; rNcor=6; rlogoDP=16; rNIcor=4; rNsEucl=11; rSSD=16; rNSW=12; rank_mean=11.857; match_rank=6
a 0 0 0 0 0 84 88 83 69 17 83 76 19 0 0 0 0
c 0 0 0 0 0 0 0 0 0 0 0 3 4 0 0 0 0
g 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 0 0 4 12 17 31 83 17 21 77 0 0 0 0
|
RVE1_RVE1_ArabidopsisPBM_shift5 (RVE1_RVE1_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RVE1_RVE1_ArabidopsisPBM_shift5.png) |
0.843 |
0.562 |
7.524 |
0.532 |
0.895 |
1.419 |
0.911 |
15 |
11 |
7 |
8 |
13 |
22 |
17 |
13.286 |
7 |
; oligos_5-7nt_m1 versus RVE1_RVE1_ArabidopsisPBM; m=3/14; ncol2=10; w=8; offset=2; strand=D; shift=5; score=13.2857; -----wAAATATCTk--
; cor=0.843; Ncor=0.562; logoDP=7.524; NIcor=0.532; NsEucl=0.895; SSD=1.419; NSW=0.911; rcor=15; rNcor=11; rlogoDP=7; rNIcor=8; rNsEucl=13; rSSD=22; rNSW=17; rank_mean=13.286; match_rank=7
a 0 0 0 0 0 65 92 92 98 7 99 0 1 2 9 0 0
c 0 0 0 0 0 4 0 0 0 0 1 1 98 10 20 0 0
g 0 0 0 0 0 6 2 7 1 4 0 0 0 4 28 0 0
t 0 0 0 0 0 25 6 1 1 89 0 99 1 84 43 0 0
|
CCA1_MA0972.1_JASPAR_shift6 (CCA1_MA0972.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_MA0972.1_JASPAR_shift6.png) |
0.851 |
0.542 |
8.273 |
0.514 |
0.883 |
1.346 |
0.904 |
11 |
13 |
4 |
10 |
20 |
19 |
20 |
13.857 |
9 |
; oligos_5-7nt_m1 versus CCA1_MA0972.1_JASPAR; m=4/14; ncol2=8; w=7; offset=3; strand=D; shift=6; score=13.8571; ------AAATATCT---
; cor=0.851; Ncor=0.542; logoDP=8.273; NIcor=0.514; NsEucl=0.883; SSD=1.346; NSW=0.904; rcor=11; rNcor=13; rlogoDP=4; rNIcor=10; rNsEucl=20; rSSD=19; rNSW=20; rank_mean=13.857; match_rank=9
a 0 0 0 0 0 0 934 960 985 35 992 1 5 21 0 0 0
c 0 0 0 0 0 0 1 1 4 0 5 12 991 91 0 0 0
g 0 0 0 0 0 0 10 37 10 5 1 1 0 14 0 0 0
t 0 0 0 0 0 0 54 2 1 960 2 986 4 874 0 0 0
|
TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift7 (TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc_shift7.png) |
0.923 |
0.462 |
0.203 |
-0.034 |
0.915 |
0.517 |
0.957 |
4 |
21 |
40 |
38 |
8 |
2 |
4 |
16.714 |
14 |
; oligos_5-7nt_m1 versus TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint_rc; m=5/14; ncol2=8; w=6; offset=4; strand=R; shift=7; score=16.7143; -------AATAAaAG--
; cor=0.923; Ncor=0.462; logoDP=0.203; NIcor=-0.034; NsEucl=0.915; SSD=0.517; NSW=0.957; rcor=4; rNcor=21; rlogoDP=40; rNIcor=38; rNsEucl=8; rSSD=2; rNSW=4; rank_mean=16.714; match_rank=14
a 0 0 0 0 0 0 0 96 96 0 96 74 53 96 10 0 0
c 0 0 0 0 0 0 0 0 0 0 0 10 10 0 12 0 0
g 0 0 0 0 0 0 0 0 0 0 0 12 21 0 74 0 0
t 0 0 0 0 0 0 0 0 0 96 0 0 12 0 0 0 0
|
HMGA_M0118_1.02_CISBP_shift1 (HMGA_M0118_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HMGA_M0118_1.02_CISBP_shift1.png) |
0.810 |
0.472 |
2.283 |
0.476 |
0.891 |
1.160 |
0.917 |
22 |
19 |
28 |
12 |
15 |
11 |
13 |
17.143 |
15 |
; oligos_5-7nt_m1 versus HMGA_M0118_1.02_CISBP; m=6/14; ncol2=9; w=7; offset=-2; strand=D; shift=1; score=17.1429; -ssrrwAAwt-------
; cor=0.810; Ncor=0.472; logoDP=2.283; NIcor=0.476; NsEucl=0.891; SSD=1.160; NSW=0.917; rcor=22; rNcor=19; rlogoDP=28; rNIcor=12; rNsEucl=15; rSSD=11; rNSW=13; rank_mean=17.143; match_rank=15
a 0 24 21 35 33 41 71 89 45 21 0 0 0 0 0 0 0
c 0 27 31 18 18 4 5 0 1 18 0 0 0 0 0 0 0
g 0 26 25 30 25 21 0 4 4 10 0 0 0 0 0 0 0
t 0 23 23 17 24 34 24 7 50 51 0 0 0 0 0 0 0
|
AHL20_AHL20_ArabidopsisPBM_shift6 (AHL20_AHL20_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AHL20_AHL20_ArabidopsisPBM_shift6.png) |
0.820 |
0.441 |
5.335 |
0.405 |
0.884 |
1.312 |
0.906 |
20 |
30 |
14 |
20 |
19 |
18 |
18 |
19.857 |
18 |
; oligos_5-7nt_m1 versus AHL20_AHL20_ArabidopsisPBM; m=7/14; ncol2=10; w=7; offset=3; strand=D; shift=6; score=19.8571; ------wAATATATTw-
; cor=0.820; Ncor=0.441; logoDP=5.335; NIcor=0.405; NsEucl=0.884; SSD=1.312; NSW=0.906; rcor=20; rNcor=30; rlogoDP=14; rNIcor=20; rNsEucl=19; rSSD=18; rNSW=18; rank_mean=19.857; match_rank=18
a 0 0 0 0 0 0 44 95 88 8 87 13 91 11 3 44 0
c 0 0 0 0 0 0 16 1 0 1 0 0 1 1 1 10 0
g 0 0 0 0 0 0 11 1 1 0 0 0 1 0 1 21 0
t 0 0 0 0 0 0 29 3 11 91 13 87 7 88 95 25 0
|
CCA1_M01819_TRANSFAC_shift0 (CCA1_M01819_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CCA1_M01819_TRANSFAC_shift0.png) |
0.780 |
0.459 |
8.358 |
0.427 |
0.894 |
2.255 |
0.887 |
31 |
22 |
3 |
14 |
14 |
41 |
27 |
21.714 |
22 |
; oligos_5-7nt_m1 versus CCA1_M01819_TRANSFAC; m=8/14; ncol2=17; w=10; offset=-3; strand=D; shift=0; score=21.7143; smharAAAAwATCTAar
; cor=0.780; Ncor=0.459; logoDP=8.358; NIcor=0.427; NsEucl=0.894; SSD=2.255; NSW=0.887; rcor=31; rNcor=22; rlogoDP=3; rNIcor=14; rNsEucl=14; rSSD=41; rNSW=27; rank_mean=21.714; match_rank=22
a 0 3 2 3 3 6 7 7 7 3 7 0 0 1 5 3 2
c 4 3 2 1 0 0 0 0 0 0 0 0 7 0 0 1 1
g 2 0 0 1 2 0 0 0 0 0 0 0 0 0 0 1 2
t 0 0 2 1 1 0 0 0 0 4 0 7 0 6 1 1 1
|
HMGIY_M01800_TRANSFAC_rc_shift5 (HMGIY_M01800_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/HMGIY_M01800_TRANSFAC_rc_shift5.png) |
0.840 |
0.504 |
2.388 |
0.072 |
0.873 |
1.162 |
0.903 |
16 |
16 |
27 |
34 |
26 |
12 |
21 |
21.714 |
23 |
; oligos_5-7nt_m1 versus HMGIY_M01800_TRANSFAC_rc; m=9/14; ncol2=6; w=6; offset=2; strand=R; shift=5; score=21.7143; -----AAAWww------
; cor=0.840; Ncor=0.504; logoDP=2.388; NIcor=0.072; NsEucl=0.873; SSD=1.162; NSW=0.903; rcor=16; rNcor=16; rlogoDP=27; rNIcor=34; rNsEucl=26; rSSD=12; rNSW=21; rank_mean=21.714; match_rank=23
a 0 0 0 0 0 9 13 11 10 7 9 0 0 0 0 0 0
c 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
g 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0
t 0 0 0 0 0 1 1 3 4 6 5 0 0 0 0 0 0
|
AHL25_AHL25_2_ArabidopsisPBM_shift6 (AHL25_AHL25_2_ArabidopsisPBM) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AHL25_AHL25_2_ArabidopsisPBM_shift6.png) |
0.790 |
0.425 |
3.008 |
0.422 |
0.879 |
1.429 |
0.898 |
27 |
36 |
25 |
15 |
22 |
23 |
23 |
24.429 |
26 |
; oligos_5-7nt_m1 versus AHL25_AHL25_2_ArabidopsisPBM; m=10/14; ncol2=10; w=7; offset=3; strand=D; shift=6; score=24.4286; ------aAwwWWwwTw-
; cor=0.790; Ncor=0.425; logoDP=3.008; NIcor=0.422; NsEucl=0.879; SSD=1.429; NSW=0.898; rcor=27; rNcor=36; rlogoDP=25; rNIcor=15; rNsEucl=22; rSSD=23; rNSW=23; rank_mean=24.429; match_rank=26
a 0 0 0 0 0 0 49 86 64 35 70 29 64 34 4 36 0
c 0 0 0 0 0 0 14 4 0 0 1 0 1 2 6 16 0
g 0 0 0 0 0 0 13 6 2 1 0 1 0 0 4 12 0
t 0 0 0 0 0 0 24 4 34 64 29 70 35 64 86 36 0
|
KAN_M1340_1.02_CISBP_shift5 (KAN_M1340_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/KAN_M1340_1.02_CISBP_shift5.png) |
0.760 |
0.507 |
1.468 |
0.491 |
0.881 |
1.822 |
0.886 |
36 |
15 |
37 |
11 |
21 |
35 |
28 |
26.143 |
29 |
; oligos_5-7nt_m1 versus KAN_M1340_1.02_CISBP; m=11/14; ncol2=10; w=8; offset=2; strand=D; shift=5; score=26.1429; -----rrwaTAtwyy--
; cor=0.760; Ncor=0.507; logoDP=1.468; NIcor=0.491; NsEucl=0.881; SSD=1.822; NSW=0.886; rcor=36; rNcor=15; rlogoDP=37; rNIcor=11; rNsEucl=21; rSSD=35; rNSW=28; rank_mean=26.143; match_rank=29
a 0 0 0 0 0 41 26 44 55 13 73 23 26 20 16 0 0
c 0 0 0 0 0 16 11 15 8 13 1 14 15 43 27 0 0
g 0 0 0 0 0 27 43 15 14 1 13 8 15 11 16 0 0
t 0 0 0 0 0 16 20 26 23 73 13 55 44 26 41 0 0
|
gw1.20.00.89.1_M0601_1.02_CISBP_shift0 (gw1.20.00.89.1_M0601_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/gw1.20.00.89.1_M0601_1.02_CISBP_shift0.png) |
0.773 |
0.416 |
0.697 |
0.405 |
0.877 |
1.484 |
0.894 |
33 |
37 |
38 |
19 |
23 |
25 |
24 |
28.429 |
32 |
; oligos_5-7nt_m1 versus gw1.20.00.89.1_M0601_1.02_CISBP; m=12/14; ncol2=10; w=7; offset=-3; strand=D; shift=0; score=28.4286; awttyraawt-------
; cor=0.773; Ncor=0.416; logoDP=0.697; NIcor=0.405; NsEucl=0.877; SSD=1.484; NSW=0.894; rcor=33; rNcor=37; rlogoDP=38; rNIcor=19; rNsEucl=23; rSSD=25; rNSW=24; rank_mean=28.429; match_rank=32
a 54 28 10 20 8 43 59 61 38 23 0 0 0 0 0 0 0
c 12 14 18 12 28 21 9 12 20 11 0 0 0 0 0 0 0
g 11 20 12 9 21 28 12 18 14 12 0 0 0 0 0 0 0
t 23 38 60 59 43 8 20 9 28 54 0 0 0 0 0 0 0
|
AHL25_AHL25_3_ArabidopsisPBM_rc_shift6 (AHL25_AHL25_3_ArabidopsisPBM_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AHL25_AHL25_3_ArabidopsisPBM_rc_shift6.png) |
0.755 |
0.407 |
1.867 |
0.224 |
0.871 |
1.623 |
0.884 |
38 |
39 |
34 |
26 |
27 |
29 |
30 |
31.857 |
35 |
; oligos_5-7nt_m1 versus AHL25_AHL25_3_ArabidopsisPBM_rc; m=13/14; ncol2=10; w=7; offset=3; strand=R; shift=6; score=31.8571; ------wAwTwWwWtw-
; cor=0.755; Ncor=0.407; logoDP=1.867; NIcor=0.224; NsEucl=0.871; SSD=1.623; NSW=0.884; rcor=38; rNcor=39; rlogoDP=34; rNIcor=26; rNsEucl=27; rSSD=29; rNSW=30; rank_mean=31.857; match_rank=35
a 0 0 0 0 0 0 56 83 62 16 51 71 60 25 22 29 0
c 0 0 0 0 0 0 6 6 0 1 0 0 0 1 15 16 0
g 0 0 0 0 0 0 10 3 1 0 0 0 1 0 9 18 0
t 0 0 0 0 0 0 28 8 37 83 49 29 39 74 54 37 0
|
PK02532.1_M1303_1.02_CISBP_rc_shift6 (PK02532.1_M1303_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/PK02532.1_M1303_1.02_CISBP_rc_shift6.png) |
0.785 |
0.458 |
1.941 |
-0.011 |
0.862 |
1.876 |
0.866 |
29 |
23 |
32 |
37 |
36 |
36 |
37 |
32.857 |
37 |
; oligos_5-7nt_m1 versus PK02532.1_M1303_1.02_CISBP_rc; m=14/14; ncol2=9; w=7; offset=3; strand=R; shift=6; score=32.8571; ------wAATATCTn--
; cor=0.785; Ncor=0.458; logoDP=1.941; NIcor=-0.011; NsEucl=0.862; SSD=1.876; NSW=0.866; rcor=29; rNcor=23; rlogoDP=32; rNIcor=37; rNsEucl=36; rSSD=36; rNSW=37; rank_mean=32.857; match_rank=37
a 0 0 0 0 0 0 50 100 100 0 100 0 0 0 25 0 0
c 0 0 0 0 0 0 0 0 0 0 0 0 100 0 25 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 0
t 0 0 0 0 0 0 50 0 0 100 0 100 0 100 25 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m4_shift1 (oligos_5-7nt_m4) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m4_shift1.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m4; m=0 (reference); ncol1=9; shift=1; ncol=12; -ggCGGGCss--
; Alignment reference
a 0 16 15 0 0 0 0 0 13 18 0 0
c 0 19 20 83 0 0 0 83 26 28 0 0
g 0 32 30 0 83 83 83 0 28 22 0 0
t 0 16 18 0 0 0 0 0 16 15 0 0
|
E2L_M01839_TRANSFAC_shift0 (E2L_M01839_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/E2L_M01839_TRANSFAC_shift0.png) |
0.848 |
0.509 |
6.206 |
0.467 |
0.875 |
1.131 |
0.906 |
13 |
14 |
9 |
13 |
25 |
10 |
19 |
14.714 |
11 |
; oligos_5-7nt_m4 versus E2L_M01839_TRANSFAC; m=1/14; ncol2=7; w=6; offset=-1; strand=D; shift=0; score=14.7143; WGGCGGG-----
; cor=0.848; Ncor=0.509; logoDP=6.206; NIcor=0.467; NsEucl=0.875; SSD=1.131; NSW=0.906; rcor=13; rNcor=14; rlogoDP=9; rNIcor=13; rNsEucl=25; rSSD=10; rNSW=19; rank_mean=14.714; match_rank=11
a 2 0 0 0 0 0 0 0 0 0 0 0
c 0 0 0 7 0 1 1 0 0 0 0 0
g 0 7 7 0 7 6 6 0 0 0 0 0
t 5 0 0 0 0 0 0 0 0 0 0 0
|
TCP23_MA1066.1_JASPAR_shift4 (TCP23_MA1066.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TCP23_MA1066.1_JASPAR_shift4.png) |
0.835 |
0.455 |
5.923 |
0.422 |
0.870 |
1.212 |
0.899 |
17 |
25 |
11 |
16 |
28 |
14 |
22 |
19.000 |
17 |
; oligos_5-7nt_m4 versus TCP23_MA1066.1_JASPAR; m=2/14; ncol2=8; w=6; offset=3; strand=D; shift=4; score= 19; ----GGGCCCAC
; cor=0.835; Ncor=0.455; logoDP=5.923; NIcor=0.422; NsEucl=0.870; SSD=1.212; NSW=0.899; rcor=17; rNcor=25; rlogoDP=11; rNIcor=16; rNsEucl=28; rSSD=14; rNSW=22; rank_mean=19.000; match_rank=17
a 0 0 0 0 5 10 37 7 4 12 954 10
c 0 0 0 0 3 5 88 971 984 980 10 959
g 0 0 0 0 966 980 835 8 8 3 31 11
t 0 0 0 0 26 5 41 13 4 6 5 21
|
DREB1B_M01700_TRANSFAC_rc_shift1 (DREB1B_M01700_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/DREB1B_M01700_TRANSFAC_rc_shift1.png) |
0.859 |
0.477 |
0.147 |
-0.147 |
0.890 |
0.602 |
0.940 |
10 |
18 |
41 |
41 |
16 |
4 |
9 |
19.857 |
20 |
; oligos_5-7nt_m4 versus DREB1B_M01700_TRANSFAC_rc; m=3/14; ncol2=5; w=5; offset=0; strand=R; shift=1; score=19.8571; -GtcGG------
; cor=0.859; Ncor=0.477; logoDP=0.147; NIcor=-0.147; NsEucl=0.890; SSD=0.602; NSW=0.940; rcor=10; rNcor=18; rlogoDP=41; rNIcor=41; rNsEucl=16; rSSD=4; rNSW=9; rank_mean=19.857; match_rank=20
a 0 123 124 52 1 23 0 0 0 0 0 0
c 0 49 34 519 7 38 0 0 0 0 0 0
g 0 572 192 84 763 563 0 0 0 0 0 0
t 0 28 422 117 1 150 0 0 0 0 0 0
|
TCP15_MA1062.1_JASPAR_shift4 (TCP15_MA1062.1_JASPAR) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TCP15_MA1062.1_JASPAR_shift4.png) |
0.823 |
0.449 |
5.750 |
0.412 |
0.867 |
1.275 |
0.894 |
19 |
27 |
12 |
18 |
30 |
15 |
26 |
21.000 |
21 |
; oligos_5-7nt_m4 versus TCP15_MA1062.1_JASPAR; m=4/14; ncol2=8; w=6; offset=3; strand=D; shift=4; score= 21; ----GGGCCCAC
; cor=0.823; Ncor=0.449; logoDP=5.750; NIcor=0.412; NsEucl=0.867; SSD=1.275; NSW=0.894; rcor=19; rNcor=27; rlogoDP=12; rNIcor=18; rNsEucl=30; rSSD=15; rNSW=26; rank_mean=21.000; match_rank=21
a 0 0 0 0 6 5 60 8 2 3 949 6
c 0 0 0 0 2 3 138 950 990 986 12 962
g 0 0 0 0 978 989 771 6 1 2 36 20
t 0 0 0 0 14 2 30 36 7 9 3 12
|
ERF13_M03170_TRANSFAC_rc_shift3 (ERF13_M03170_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ERF13_M03170_TRANSFAC_rc_shift3.png) |
0.820 |
0.478 |
4.286 |
0.228 |
0.877 |
1.487 |
0.894 |
21 |
17 |
18 |
25 |
24 |
27 |
25 |
22.429 |
24 |
; oligos_5-7nt_m4 versus ERF13_M03170_TRANSFAC_rc; m=5/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=22.4286; ---CGGGCGGCm
; cor=0.820; Ncor=0.478; logoDP=4.286; NIcor=0.228; NsEucl=0.877; SSD=1.487; NSW=0.894; rcor=21; rNcor=17; rlogoDP=18; rNIcor=25; rNsEucl=24; rSSD=27; rNSW=25; rank_mean=22.429; match_rank=24
a 0 0 0 1 0 11 0 0 0 0 0 27
c 0 0 0 72 4 0 6 100 0 0 100 61
g 0 0 0 12 95 89 92 0 100 100 0 12
t 0 0 0 15 1 0 2 0 0 0 0 0
|
ESR1_M03213_TRANSFAC_rc_shift3 (ESR1_M03213_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ESR1_M03213_TRANSFAC_rc_shift3.png) |
0.795 |
0.464 |
5.633 |
0.278 |
0.869 |
1.671 |
0.881 |
25 |
20 |
13 |
24 |
29 |
30 |
31 |
24.571 |
27 |
; oligos_5-7nt_m4 versus ESR1_M03213_TRANSFAC_rc; m=6/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=24.5714; ---cGGGCGGCC
; cor=0.795; Ncor=0.464; logoDP=5.633; NIcor=0.278; NsEucl=0.869; SSD=1.671; NSW=0.881; rcor=25; rNcor=20; rlogoDP=13; rNIcor=24; rNsEucl=29; rSSD=30; rNSW=31; rank_mean=24.571; match_rank=27
a 0 0 0 7 0 1 1 0 0 0 0 0
c 0 0 0 52 6 0 6 100 0 0 100 98
g 0 0 0 22 93 99 92 0 100 100 0 2
t 0 0 0 19 1 0 1 0 0 0 0 0
|
OsI_08196_M1658_1.02_CISBP_shift4 (OsI_08196_M1658_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/OsI_08196_M1658_1.02_CISBP_shift4.png) |
0.797 |
0.435 |
4.736 |
0.387 |
0.862 |
1.374 |
0.886 |
24 |
34 |
17 |
23 |
35 |
20 |
29 |
26.000 |
28 |
; oligos_5-7nt_m4 versus OsI_08196_M1658_1.02_CISBP; m=7/14; ncol2=8; w=6; offset=3; strand=D; shift=4; score= 26; ----GGGCCCAC
; cor=0.797; Ncor=0.435; logoDP=4.736; NIcor=0.387; NsEucl=0.862; SSD=1.374; NSW=0.886; rcor=24; rNcor=34; rlogoDP=17; rNIcor=23; rNsEucl=35; rSSD=20; rNSW=29; rank_mean=26.000; match_rank=28
a 0 0 0 0 0 5 9 0 0 0 90 0
c 0 0 0 0 0 0 9 86 100 100 5 86
g 0 0 0 0 95 95 73 5 0 0 5 7
t 0 0 0 0 5 0 9 9 0 0 0 7
|
LjSGA_053525.1_M1662_1.02_CISBP_shift4 (LjSGA_053525.1_M1662_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/LjSGA_053525.1_M1662_1.02_CISBP_shift4.png) |
0.794 |
0.433 |
5.996 |
0.388 |
0.857 |
1.471 |
0.877 |
26 |
35 |
10 |
22 |
41 |
24 |
32 |
27.143 |
30 |
; oligos_5-7nt_m4 versus LjSGA_053525.1_M1662_1.02_CISBP; m=8/14; ncol2=8; w=6; offset=3; strand=D; shift=4; score=27.1429; ----GGgCCCAC
; cor=0.794; Ncor=0.433; logoDP=5.996; NIcor=0.388; NsEucl=0.857; SSD=1.471; NSW=0.877; rcor=26; rNcor=35; rlogoDP=10; rNIcor=22; rNsEucl=41; rSSD=24; rNSW=32; rank_mean=27.143; match_rank=30
a 0 0 0 0 0 0 14 0 0 0 100 0
c 0 0 0 0 0 0 14 100 100 100 0 100
g 0 0 0 0 100 100 58 0 0 0 0 0
t 0 0 0 0 0 0 14 0 0 0 0 0
|
CRF1_M03193_TRANSFAC_rc_shift3 (CRF1_M03193_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CRF1_M03193_TRANSFAC_rc_shift3.png) |
0.781 |
0.455 |
4.176 |
0.213 |
0.866 |
1.754 |
0.875 |
30 |
24 |
19 |
27 |
32 |
32 |
34 |
28.286 |
31 |
; oligos_5-7nt_m4 versus CRF1_M03193_TRANSFAC_rc; m=9/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=28.2857; ---sGGGCGGCm
; cor=0.781; Ncor=0.455; logoDP=4.176; NIcor=0.213; NsEucl=0.866; SSD=1.754; NSW=0.875; rcor=30; rNcor=24; rlogoDP=19; rNIcor=27; rNsEucl=32; rSSD=32; rNSW=34; rank_mean=28.286; match_rank=31
a 0 0 0 2 1 4 0 0 0 0 0 28
c 0 0 0 55 8 0 0 100 0 0 100 54
g 0 0 0 36 77 96 97 0 100 100 0 18
t 0 0 0 7 14 0 3 0 0 0 0 0
|
AT5G07580_M03194_TRANSFAC_rc_shift3 (AT5G07580_M03194_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT5G07580_M03194_TRANSFAC_rc_shift3.png) |
0.778 |
0.454 |
4.005 |
0.183 |
0.866 |
1.748 |
0.875 |
32 |
26 |
24 |
32 |
31 |
31 |
33 |
29.857 |
33 |
; oligos_5-7nt_m4 versus AT5G07580_M03194_TRANSFAC_rc; m=10/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=29.8571; ---CGGkCGGCg
; cor=0.778; Ncor=0.454; logoDP=4.005; NIcor=0.183; NsEucl=0.866; SSD=1.748; NSW=0.875; rcor=32; rNcor=26; rlogoDP=24; rNIcor=32; rNsEucl=31; rSSD=31; rNSW=33; rank_mean=29.857; match_rank=33
a 0 0 0 5 1 5 1 0 0 0 0 15
c 0 0 0 68 2 0 8 100 0 0 100 21
g 0 0 0 4 96 95 61 0 100 100 0 63
t 0 0 0 23 1 0 30 0 0 0 0 1
|
ERF6_M03208_TRANSFAC_rc_shift3 (ERF6_M03208_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ERF6_M03208_TRANSFAC_rc_shift3.png) |
0.763 |
0.445 |
4.031 |
0.190 |
0.864 |
1.806 |
0.871 |
34 |
28 |
22 |
29 |
34 |
34 |
36 |
31.000 |
34 |
; oligos_5-7nt_m4 versus ERF6_M03208_TRANSFAC_rc; m=11/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score= 31; ---sGGGCGGCs
; cor=0.763; Ncor=0.445; logoDP=4.031; NIcor=0.190; NsEucl=0.864; SSD=1.806; NSW=0.871; rcor=34; rNcor=28; rlogoDP=22; rNIcor=29; rNsEucl=34; rSSD=34; rNSW=36; rank_mean=31.000; match_rank=34
a 0 0 0 2 1 10 1 0 0 0 0 17
c 0 0 0 58 4 0 10 100 0 0 100 27
g 0 0 0 35 87 90 71 0 100 100 0 56
t 0 0 0 5 8 0 18 0 0 0 0 0
|
RAP2.11_M03202_TRANSFAC_rc_shift3 (RAP2.11_M03202_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RAP2.11_M03202_TRANSFAC_rc_shift3.png) |
0.762 |
0.444 |
4.156 |
0.200 |
0.860 |
1.930 |
0.862 |
35 |
29 |
20 |
28 |
38 |
38 |
39 |
32.429 |
36 |
; oligos_5-7nt_m4 versus RAP2.11_M03202_TRANSFAC_rc; m=12/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=32.4286; ---sGGGCGGCm
; cor=0.762; Ncor=0.444; logoDP=4.156; NIcor=0.200; NsEucl=0.860; SSD=1.930; NSW=0.862; rcor=35; rNcor=29; rlogoDP=20; rNIcor=28; rNsEucl=38; rSSD=38; rNSW=39; rank_mean=32.429; match_rank=36
a 0 0 0 21 0 0 1 0 0 0 0 47
c 0 0 0 38 11 0 0 100 0 0 100 45
g 0 0 0 37 89 100 94 0 100 100 0 7
t 0 0 0 4 0 0 5 0 0 0 0 1
|
CRF3_M03190_TRANSFAC_rc_shift3 (CRF3_M03190_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/CRF3_M03190_TRANSFAC_rc_shift3.png) |
0.755 |
0.440 |
4.031 |
0.190 |
0.861 |
1.898 |
0.864 |
39 |
31 |
23 |
31 |
37 |
37 |
38 |
33.714 |
39 |
; oligos_5-7nt_m4 versus CRF3_M03190_TRANSFAC_rc; m=13/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=33.7143; ---ckGGCGGCm
; cor=0.755; Ncor=0.440; logoDP=4.031; NIcor=0.190; NsEucl=0.861; SSD=1.898; NSW=0.864; rcor=39; rNcor=31; rlogoDP=23; rNIcor=31; rNsEucl=37; rSSD=37; rNSW=38; rank_mean=33.714; match_rank=39
a 0 0 0 4 1 3 1 0 0 0 0 44
c 0 0 0 54 2 0 0 100 0 0 100 36
g 0 0 0 23 63 97 93 0 100 100 0 19
t 0 0 0 19 34 0 6 0 0 0 0 1
|
ERF-1_M03189_TRANSFAC_rc_shift3 (ERF-1_M03189_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ERF-1_M03189_TRANSFAC_rc_shift3.png) |
0.752 |
0.439 |
4.040 |
0.190 |
0.859 |
1.951 |
0.861 |
41 |
33 |
21 |
30 |
40 |
40 |
41 |
35.143 |
40 |
; oligos_5-7nt_m4 versus ERF-1_M03189_TRANSFAC_rc; m=14/14; ncol2=10; w=7; offset=2; strand=R; shift=3; score=35.1429; ---CGGkCGGCs
; cor=0.752; Ncor=0.439; logoDP=4.040; NIcor=0.190; NsEucl=0.859; SSD=1.951; NSW=0.861; rcor=41; rNcor=33; rlogoDP=21; rNIcor=30; rNsEucl=40; rSSD=40; rNSW=41; rank_mean=35.143; match_rank=40
a 0 0 0 1 0 20 1 0 0 0 0 14
c 0 0 0 86 2 0 7 100 0 0 100 26
g 0 0 0 4 98 80 46 0 100 100 0 60
t 0 0 0 9 0 0 46 0 0 0 0 0
|