Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m1_shift1 (oligos_5-7nt_m1) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m1_shift1.png) |
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; oligos_5-7nt_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wkCTGTTGCdk
; Alignment reference
a 0 20 14 3 3 4 3 1 2 5 24 17
c 0 11 15 63 1 4 7 5 2 63 12 17
g 0 15 22 3 3 63 1 2 67 4 18 18
t 0 26 21 3 65 1 61 64 1 0 18 20
|
AtMYB46_I_AthaMYB_shift1 (AtMYB46_I_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB46_I_AthaMYB_shift1.png) |
0.856 |
0.623 |
4.869 |
0.611 |
0.910 |
1.029 |
0.936 |
3 |
5 |
6 |
3 |
4 |
2 |
2 |
3.571 |
1 |
; oligos_5-7nt_m1 versus AtMYB46_I_AthaMYB; m=1/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 3.5714; -kdCdGTTr---
; cor=0.856; Ncor=0.623; logoDP=4.869; NIcor=0.611; NsEucl=0.910; SSD=1.029; NSW=0.936; rcor=3; rNcor=5; rlogoDP=6; rNIcor=3; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=3.571; match_rank=1
a 0 0 1 0 1 0 0 0 1 0 0 0
c 0 0 0 3 0 0 0 0 0 0 0 0
g 0 1 1 0 1 3 0 0 2 0 0 0
t 0 2 1 0 1 0 3 3 0 0 0 0
|
RAV1_M00343_TRANSFAC_rc_shift0 (RAV1_M00343_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RAV1_M00343_TRANSFAC_rc_shift0.png) |
0.902 |
0.827 |
1.405 |
0.047 |
0.945 |
0.736 |
0.967 |
1 |
1 |
13 |
11 |
1 |
1 |
1 |
4.143 |
2 |
; oligos_5-7nt_m1 versus RAV1_M00343_TRANSFAC_rc; m=2/12; ncol2=12; w=11; offset=-1; strand=R; shift=0; score= 4.1429; twwmTGTTGcwk
; cor=0.902; Ncor=0.827; logoDP=1.405; NIcor=0.047; NsEucl=0.945; SSD=0.736; NSW=0.967; rcor=1; rNcor=1; rlogoDP=13; rNIcor=11; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=4.143; match_rank=2
a 16 19 20 21 0 0 0 0 0 1 14 6
c 17 10 4 32 0 0 3 9 0 35 10 12
g 9 6 4 7 0 69 4 12 62 14 11 17
t 27 34 41 9 69 0 62 47 0 7 16 14
|
TEM1_M0008_1.02_CISBP_shift2 (TEM1_M0008_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TEM1_M0008_1.02_CISBP_shift2.png) |
0.842 |
0.613 |
5.420 |
0.596 |
0.900 |
1.271 |
0.921 |
4 |
6 |
4 |
4 |
6 |
5 |
5 |
4.857 |
3 |
; oligos_5-7nt_m1 versus TEM1_M0008_1.02_CISBP; m=3/12; ncol2=8; w=8; offset=1; strand=D; shift=2; score= 4.8571; --wATGTTGC--
; cor=0.842; Ncor=0.613; logoDP=5.420; NIcor=0.596; NsEucl=0.900; SSD=1.271; NSW=0.921; rcor=4; rNcor=6; rlogoDP=4; rNIcor=4; rNsEucl=6; rSSD=5; rNSW=5; rank_mean=4.857; match_rank=3
a 0 0 27 76 0 0 0 0 0 0 0 0
c 0 0 0 24 0 0 0 11 0 68 0 0
g 0 0 13 0 0 100 0 2 91 10 0 0
t 0 0 60 0 100 0 100 87 9 22 0 0
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EDF3_M0080_1.02_CISBP_rc_shift2 (EDF3_M0080_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/EDF3_M0080_1.02_CISBP_rc_shift2.png) |
0.842 |
0.612 |
0.355 |
-0.091 |
0.900 |
1.269 |
0.921 |
5 |
7 |
15 |
14 |
5 |
4 |
4 |
7.714 |
4 |
; oligos_5-7nt_m1 versus EDF3_M0080_1.02_CISBP_rc; m=4/12; ncol2=8; w=8; offset=1; strand=R; shift=2; score= 7.7143; --wmTGttgy--
; cor=0.842; Ncor=0.612; logoDP=0.355; NIcor=-0.091; NsEucl=0.900; SSD=1.269; NSW=0.921; rcor=5; rNcor=7; rlogoDP=15; rNIcor=14; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=7.714; match_rank=4
a 0 0 29 40 5 6 13 6 13 14 0 0
c 0 0 15 36 14 3 12 23 13 39 0 0
g 0 0 17 13 0 87 10 19 53 22 0 0
t 0 0 39 11 81 4 65 52 21 25 0 0
|
AtMYB104_I_AthaMYB_shift1 (AtMYB104_I_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB104_I_AthaMYB_shift1.png) |
0.872 |
0.634 |
6.875 |
0.620 |
0.890 |
1.538 |
0.904 |
2 |
4 |
1 |
2 |
14 |
18 |
14 |
7.857 |
5 |
; oligos_5-7nt_m1 versus AtMYB104_I_AthaMYB; m=5/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 7.8571; -TACTGTTG---
; cor=0.872; Ncor=0.634; logoDP=6.875; NIcor=0.620; NsEucl=0.890; SSD=1.538; NSW=0.904; rcor=2; rNcor=4; rlogoDP=1; rNIcor=2; rNsEucl=14; rSSD=18; rNSW=14; rank_mean=7.857; match_rank=5
a 0 0 1 0 0 0 0 0 0 0 0 0
c 0 0 0 1 0 0 0 0 0 0 0 0
g 0 0 0 0 0 1 0 0 1 0 0 0
t 0 1 0 0 1 0 1 1 0 0 0 0
|
AtMYB101_I_AthaMYB_shift1 (AtMYB101_I_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB101_I_AthaMYB_shift1.png) |
0.818 |
0.595 |
4.946 |
0.593 |
0.897 |
1.358 |
0.915 |
9 |
10 |
5 |
5 |
8 |
12 |
8 |
8.143 |
6 |
; oligos_5-7nt_m1 versus AtMYB101_I_AthaMYB; m=6/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 8.1429; -kwCwGTTr---
; cor=0.818; Ncor=0.595; logoDP=4.946; NIcor=0.593; NsEucl=0.897; SSD=1.358; NSW=0.915; rcor=9; rNcor=10; rlogoDP=5; rNIcor=5; rNsEucl=8; rSSD=12; rNSW=8; rank_mean=8.143; match_rank=6
a 0 0 1 0 1 0 0 0 1 0 0 0
c 0 0 0 2 0 0 0 0 0 0 0 0
g 0 1 0 0 0 2 0 0 1 0 0 0
t 0 1 1 0 1 0 2 2 0 0 0 0
|
RAV1_M0077_1.02_CISBP_rc_shift2 (RAV1_M0077_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RAV1_M0077_1.02_CISBP_rc_shift2.png) |
0.839 |
0.763 |
0.194 |
-0.218 |
0.919 |
1.299 |
0.935 |
6 |
2 |
18 |
23 |
2 |
7 |
3 |
8.714 |
8 |
; oligos_5-7nt_m1 versus RAV1_M0077_1.02_CISBP_rc; m=7/12; ncol2=10; w=10; offset=1; strand=R; shift=2; score= 8.7143; --wmTGttgywh
; cor=0.839; Ncor=0.763; logoDP=0.194; NIcor=-0.218; NsEucl=0.919; SSD=1.299; NSW=0.935; rcor=6; rNcor=2; rlogoDP=18; rNIcor=23; rNsEucl=2; rSSD=7; rNSW=3; rank_mean=8.714; match_rank=8
a 0 0 28 37 3 7 13 6 13 16 27 26
c 0 0 16 37 14 3 14 22 14 37 24 25
g 0 0 17 14 0 87 11 21 53 21 21 23
t 0 0 39 12 83 3 62 51 20 26 28 26
|
TEM2_M0013_1.02_CISBP_shift2 (TEM2_M0013_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/TEM2_M0013_1.02_CISBP_shift2.png) |
0.826 |
0.601 |
5.970 |
0.586 |
0.892 |
1.483 |
0.907 |
8 |
9 |
3 |
6 |
12 |
16 |
12 |
9.429 |
9 |
; oligos_5-7nt_m1 versus TEM2_M0013_1.02_CISBP; m=8/12; ncol2=8; w=8; offset=1; strand=D; shift=2; score= 9.4286; --kATGTTGC--
; cor=0.826; Ncor=0.601; logoDP=5.970; NIcor=0.586; NsEucl=0.892; SSD=1.483; NSW=0.907; rcor=8; rNcor=9; rlogoDP=3; rNIcor=6; rNsEucl=12; rSSD=16; rNSW=12; rank_mean=9.429; match_rank=9
a 0 0 19 86 0 0 0 0 0 0 0 0
c 0 0 0 14 0 0 0 9 0 72 0 0
g 0 0 25 0 0 100 0 0 100 7 0 0
t 0 0 56 0 100 0 100 91 0 21 0 0
|
AtMYB37_I_AthaMYB_shift1 (AtMYB37_I_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB37_I_AthaMYB_shift1.png) |
0.788 |
0.573 |
3.938 |
0.548 |
0.897 |
1.345 |
0.916 |
13 |
12 |
10 |
8 |
7 |
11 |
7 |
9.714 |
10 |
; oligos_5-7nt_m1 versus AtMYB37_I_AthaMYB; m=9/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 9.7143; -wtcaGTTr---
; cor=0.788; Ncor=0.573; logoDP=3.938; NIcor=0.548; NsEucl=0.897; SSD=1.345; NSW=0.916; rcor=13; rNcor=12; rlogoDP=10; rNIcor=8; rNsEucl=7; rSSD=11; rNSW=7; rank_mean=9.714; match_rank=10
a 0 2 1 1 3 0 0 0 2 0 0 0
c 0 0 1 3 0 0 0 0 0 0 0 0
g 0 1 1 0 1 5 0 0 3 0 0 0
t 0 2 2 1 1 0 5 5 0 0 0 0
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AtMYB60_I_AthaMYB_shift1 (AtMYB60_I_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB60_I_AthaMYB_shift1.png) |
0.784 |
0.570 |
4.130 |
0.549 |
0.895 |
1.413 |
0.912 |
14 |
13 |
8 |
7 |
9 |
13 |
9 |
10.429 |
11 |
; oligos_5-7nt_m1 versus AtMYB60_I_AthaMYB; m=10/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score=10.4286; -ddMdGTTr---
; cor=0.784; Ncor=0.570; logoDP=4.130; NIcor=0.549; NsEucl=0.895; SSD=1.413; NSW=0.912; rcor=14; rNcor=13; rlogoDP=8; rNIcor=7; rNsEucl=9; rSSD=13; rNSW=9; rank_mean=10.429; match_rank=11
a 0 1 2 1 2 0 0 0 2 0 0 0
c 0 0 0 3 0 0 0 0 0 0 0 0
g 0 1 1 0 1 4 0 0 2 0 0 0
t 0 2 1 0 1 0 4 4 0 0 0 0
|
AtMYB15_I_AthaMYB_shift1 (AtMYB15_I_AthaMYB) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB15_I_AthaMYB_shift1.png) |
0.777 |
0.565 |
3.939 |
0.544 |
0.894 |
1.430 |
0.911 |
17 |
14 |
9 |
9 |
10 |
14 |
10 |
11.857 |
12 |
; oligos_5-7nt_m1 versus AtMYB15_I_AthaMYB; m=11/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score=11.8571; -wwcaGTTr---
; cor=0.777; Ncor=0.565; logoDP=3.939; NIcor=0.544; NsEucl=0.894; SSD=1.430; NSW=0.911; rcor=17; rNcor=14; rlogoDP=9; rNIcor=9; rNsEucl=10; rSSD=14; rNSW=10; rank_mean=11.857; match_rank=12
a 0 2 2 1 3 0 0 0 2 0 0 0
c 0 0 0 3 0 0 0 0 0 0 0 0
g 0 1 1 0 1 5 0 0 3 0 0 0
t 0 2 2 1 1 0 5 5 0 0 0 0
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EDF3_M0081_1.02_CISBP_rc_shift2 (EDF3_M0081_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/EDF3_M0081_1.02_CISBP_rc_shift2.png) |
0.828 |
0.603 |
1.621 |
-0.069 |
0.891 |
1.526 |
0.905 |
7 |
8 |
12 |
13 |
13 |
17 |
13 |
11.857 |
13 |
; oligos_5-7nt_m1 versus EDF3_M0081_1.02_CISBP_rc; m=12/12; ncol2=8; w=8; offset=1; strand=R; shift=2; score=11.8571; --TmTGTTGy--
; cor=0.828; Ncor=0.603; logoDP=1.621; NIcor=-0.069; NsEucl=0.891; SSD=1.526; NSW=0.905; rcor=7; rNcor=8; rlogoDP=12; rNIcor=13; rNsEucl=13; rSSD=17; rNSW=13; rank_mean=11.857; match_rank=13
a 0 0 15 67 0 0 0 0 0 0 0 0
c 0 0 0 33 0 0 0 0 0 57 0 0
g 0 0 0 0 0 100 0 0 100 0 0 0
t 0 0 85 0 100 0 100 100 0 43 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m5_shift0 (oligos_5-7nt_m5) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m5_shift0.png) |
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; oligos_5-7nt_m5; m=0 (reference); ncol1=11; shift=0; ncol=13; amATAACCCww--
; Alignment reference
a 29 19 67 3 66 61 3 5 5 24 24 0 0
c 15 21 3 8 1 2 67 65 63 17 17 0 0
g 16 15 0 3 3 3 1 0 1 12 10 0 0
t 13 18 3 59 3 7 2 3 4 20 22 0 0
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XM_002876896.1_M1282_1.02_CISBP_shift0 (XM_002876896.1_M1282_1.02_CISBP) |
![](peaks_motifs_vs_db_footDB_aligned_logos/XM_002876896.1_M1282_1.02_CISBP_shift0.png) |
0.773 |
0.654 |
4.486 |
0.638 |
0.915 |
1.763 |
0.920 |
18 |
3 |
7 |
1 |
3 |
21 |
6 |
8.429 |
7 |
; oligos_5-7nt_m5 versus XM_002876896.1_M1282_1.02_CISBP; m=1/2; ncol2=13; w=11; offset=0; strand=D; shift=0; score= 8.4286; ggytAACCCCywt
; cor=0.773; Ncor=0.654; logoDP=4.486; NIcor=0.638; NsEucl=0.915; SSD=1.763; NSW=0.920; rcor=18; rNcor=3; rlogoDP=7; rNIcor=1; rNsEucl=3; rSSD=21; rNSW=6; rank_mean=8.429; match_rank=7
a 21 21 20 19 76 100 0 0 4 4 6 25 21
c 22 22 28 20 14 0 100 100 89 88 55 15 20
g 36 36 19 10 5 0 0 0 4 4 5 24 20
t 21 21 33 51 5 0 0 0 3 4 34 36 39
|
AtMYB1_II_AthaMYB_rc_shift3 (AtMYB1_II_AthaMYB_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB1_II_AthaMYB_rc_shift3.png) |
0.780 |
0.425 |
0.316 |
-0.186 |
0.843 |
1.774 |
0.852 |
15 |
18 |
16 |
22 |
22 |
22 |
22 |
19.571 |
23 |
; oligos_5-7nt_m5 versus AtMYB1_II_AthaMYB_rc; m=2/2; ncol2=6; w=6; offset=3; strand=R; shift=3; score=19.5714; ---TAACCT----
; cor=0.780; Ncor=0.425; logoDP=0.316; NIcor=-0.186; NsEucl=0.843; SSD=1.774; NSW=0.852; rcor=15; rNcor=18; rlogoDP=16; rNIcor=22; rNsEucl=22; rSSD=22; rNSW=22; rank_mean=19.571; match_rank=23
a 0 0 0 0 1 1 0 0 0 0 0 0 0
c 0 0 0 0 0 0 1 1 0 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 1 0 0 0 0 1 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m3_shift2.png) |
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; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=11; --grAGGGGmk
; Alignment reference
a 0 0 15 20 79 0 0 0 0 29 16
c 0 0 18 14 0 0 0 0 0 21 15
g 0 0 31 32 0 79 79 79 79 16 27
t 0 0 15 13 0 0 0 0 0 13 21
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1200010153_M1391_1.02_CISBP_rc_shift0 (1200010153_M1391_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/1200010153_M1391_1.02_CISBP_rc_shift0.png) |
0.807 |
0.587 |
0.212 |
-0.136 |
0.894 |
1.444 |
0.910 |
10 |
11 |
17 |
21 |
11 |
15 |
11 |
13.714 |
14 |
; oligos_5-7nt_m3 versus 1200010153_M1391_1.02_CISBP_rc; m=1/2; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=13.7143; rryTAGGGkt-
; cor=0.807; Ncor=0.587; logoDP=0.212; NIcor=-0.136; NsEucl=0.894; SSD=1.444; NSW=0.910; rcor=10; rNcor=11; rlogoDP=17; rNIcor=21; rNsEucl=11; rSSD=15; rNSW=11; rank_mean=13.714; match_rank=14
a 33 33 12 3 95 0 0 0 8 24 0
c 18 18 42 6 0 0 1 0 3 8 0
g 26 25 17 1 5 98 98 87 60 5 0
t 23 24 29 90 0 2 1 13 29 63 0
|
ASR-1_M01161_TRANSFAC_rc_shift4 (ASR-1_M01161_TRANSFAC_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/ASR-1_M01161_TRANSFAC_rc_shift4.png) |
0.757 |
0.421 |
0.700 |
-0.101 |
0.821 |
1.600 |
0.840 |
22 |
20 |
14 |
15 |
23 |
19 |
23 |
19.429 |
22 |
; oligos_5-7nt_m3 versus ASR-1_M01161_TRANSFAC_rc; m=2/2; ncol2=5; w=5; offset=2; strand=R; shift=4; score=19.4286; ----wsGGk--
; cor=0.757; Ncor=0.421; logoDP=0.700; NIcor=-0.101; NsEucl=0.821; SSD=1.600; NSW=0.840; rcor=22; rNcor=20; rlogoDP=14; rNIcor=15; rNsEucl=23; rSSD=19; rNSW=23; rank_mean=19.429; match_rank=22
a 0 0 0 0 7 0 0 0 1 0 0
c 0 0 0 0 0 7 0 1 1 0 0
g 0 0 0 0 2 13 20 19 8 0 0
t 0 0 0 0 11 0 0 0 10 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m4_shift1 (oligos_5-7nt_m4) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m4_shift1.png) |
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; oligos_5-7nt_m4; m=0 (reference); ncol1=10; shift=1; ncol=11; -mhACTCTAmr
; Alignment reference
a 0 8 9 25 0 0 0 0 27 10 8
c 0 10 7 0 27 0 27 0 0 7 6
g 0 4 2 1 0 1 0 0 0 4 7
t 0 5 9 1 0 26 0 27 0 6 6
|
RHL41_M0377_1.02_CISBP_rc_shift0 (RHL41_M0377_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RHL41_M0377_1.02_CISBP_rc_shift0.png) |
0.792 |
0.432 |
0.072 |
-0.129 |
0.871 |
1.192 |
0.901 |
12 |
17 |
23 |
18 |
16 |
3 |
15 |
14.857 |
15 |
; oligos_5-7nt_m4 versus RHL41_M0377_1.02_CISBP_rc; m=1/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=14.8571; hwyASwy----
; cor=0.792; Ncor=0.432; logoDP=0.072; NIcor=-0.129; NsEucl=0.871; SSD=1.192; NSW=0.901; rcor=12; rNcor=17; rlogoDP=23; rNIcor=18; rNsEucl=16; rSSD=3; rNSW=15; rank_mean=14.857; match_rank=15
a 25 28 17 75 1 27 21 0 0 0 0
c 26 24 45 0 69 8 30 0 0 0 0
g 23 20 12 24 28 2 24 0 0 0 0
t 26 28 26 1 2 63 25 0 0 0 0
|
RBE_M0376_1.02_CISBP_rc_shift0 (RBE_M0376_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/RBE_M0376_1.02_CISBP_rc_shift0.png) |
0.767 |
0.418 |
0.097 |
-0.134 |
0.866 |
1.292 |
0.892 |
19 |
21 |
20 |
20 |
17 |
6 |
16 |
17.000 |
18 |
; oligos_5-7nt_m4 versus RBE_M0376_1.02_CISBP_rc; m=2/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score= 17; dymAsWy----
; cor=0.767; Ncor=0.418; logoDP=0.097; NIcor=-0.134; NsEucl=0.866; SSD=1.292; NSW=0.892; rcor=19; rNcor=21; rlogoDP=20; rNIcor=20; rNsEucl=17; rSSD=6; rNSW=16; rank_mean=17.000; match_rank=18
a 30 24 33 79 0 29 24 0 0 0 0
c 19 27 31 3 56 0 26 0 0 0 0
g 25 17 15 13 34 2 24 0 0 0 0
t 26 32 21 5 10 69 26 0 0 0 0
|
STZ_M0370_1.02_CISBP_rc_shift0 (STZ_M0370_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/STZ_M0370_1.02_CISBP_rc_shift0.png) |
0.759 |
0.414 |
0.121 |
-0.115 |
0.865 |
1.310 |
0.891 |
20 |
22 |
19 |
16 |
18 |
8 |
17 |
17.143 |
19 |
; oligos_5-7nt_m4 versus STZ_M0370_1.02_CISBP_rc; m=3/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.1429; ywyAsTc----
; cor=0.759; Ncor=0.414; logoDP=0.121; NIcor=-0.115; NsEucl=0.865; SSD=1.310; NSW=0.891; rcor=20; rNcor=22; rlogoDP=19; rNIcor=16; rNsEucl=18; rSSD=8; rNSW=17; rank_mean=17.143; match_rank=19
a 24 32 15 78 2 18 23 0 0 0 0
c 25 22 51 0 52 10 31 0 0 0 0
g 23 16 6 15 38 4 23 0 0 0 0
t 28 30 28 7 8 68 23 0 0 0 0
|
AT5G04390_M0375_1.02_CISBP_rc_shift0 (AT5G04390_M0375_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT5G04390_M0375_1.02_CISBP_rc_shift0.png) |
0.778 |
0.425 |
0.088 |
-0.132 |
0.865 |
1.312 |
0.891 |
16 |
19 |
22 |
19 |
19 |
9 |
18 |
17.429 |
20 |
; oligos_5-7nt_m4 versus AT5G04390_M0375_1.02_CISBP_rc; m=4/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.4286; kwyRsty----
; cor=0.778; Ncor=0.425; logoDP=0.088; NIcor=-0.132; NsEucl=0.865; SSD=1.312; NSW=0.891; rcor=16; rNcor=19; rlogoDP=22; rNIcor=19; rNsEucl=19; rSSD=9; rNSW=18; rank_mean=17.429; match_rank=20
a 24 28 20 69 4 23 22 0 0 0 0
c 24 23 40 0 56 8 29 0 0 0 0
g 25 19 8 25 34 3 24 0 0 0 0
t 27 30 32 6 6 66 25 0 0 0 0
|
AT3G53600_M0374_1.02_CISBP_rc_shift0 (AT3G53600_M0374_1.02_CISBP_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AT3G53600_M0374_1.02_CISBP_rc_shift0.png) |
0.758 |
0.413 |
0.091 |
-0.126 |
0.864 |
1.325 |
0.890 |
21 |
23 |
21 |
17 |
20 |
10 |
19 |
18.714 |
21 |
; oligos_5-7nt_m4 versus AT3G53600_M0374_1.02_CISBP_rc; m=5/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=18.7143; hwyAswc----
; cor=0.758; Ncor=0.413; logoDP=0.091; NIcor=-0.126; NsEucl=0.864; SSD=1.325; NSW=0.890; rcor=21; rNcor=23; rlogoDP=21; rNIcor=17; rNsEucl=20; rSSD=10; rNSW=19; rank_mean=18.714; match_rank=21
a 25 30 16 79 3 26 23 0 0 0 0
c 26 24 48 0 59 13 30 0 0 0 0
g 24 18 9 18 36 2 23 0 0 0 0
t 25 28 27 3 2 59 24 0 0 0 0
|
Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NIcor |
NsEucl |
SSD |
NSW |
rcor |
rNcor |
rlogoDP |
rNIcor |
rNsEucl |
rSSD |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
---|
oligos_5-7nt_m2_shift2 (oligos_5-7nt_m2) |
![](peaks_motifs_vs_db_footDB_aligned_logos/oligos_5-7nt_m2_shift2.png) |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
  |
; oligos_5-7nt_m2; m=0 (reference); ncol1=9; shift=2; ncol=11; --wrAGTATtw
; Alignment reference
a 0 0 23 25 73 0 0 73 0 18 19
c 0 0 18 10 0 0 0 0 0 15 14
g 0 0 12 21 0 73 0 0 0 15 13
t 0 0 20 17 0 0 73 0 73 25 27
|
SPF1_M00702_TRANSFAC_shift0 (SPF1_M00702_TRANSFAC) |
![](peaks_motifs_vs_db_footDB_aligned_logos/SPF1_M00702_TRANSFAC_shift0.png) |
0.757 |
0.550 |
6.601 |
0.523 |
0.878 |
1.909 |
0.881 |
23 |
15 |
2 |
10 |
15 |
23 |
20 |
15.429 |
16 |
; oligos_5-7nt_m2 versus SPF1_M00702_TRANSFAC; m=1/2; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=15.4286; wmAYAGTAww-
; cor=0.757; Ncor=0.550; logoDP=6.601; NIcor=0.523; NsEucl=0.878; SSD=1.909; NSW=0.881; rcor=23; rNcor=15; rlogoDP=2; rNIcor=10; rNsEucl=15; rSSD=23; rNSW=20; rank_mean=15.429; match_rank=16
a 4 4 7 0 7 0 0 5 3 3 0
c 0 3 0 2 0 0 0 1 0 0 0
g 0 0 0 0 0 7 0 1 1 0 0
t 3 0 0 5 0 0 7 0 3 4 0
|
AtMYB104_I_AthaMYB_rc_shift0 (AtMYB104_I_AthaMYB_rc) |
![](peaks_motifs_vs_db_footDB_aligned_logos/AtMYB104_I_AthaMYB_rc_shift0.png) |
0.799 |
0.436 |
1.946 |
-0.004 |
0.849 |
1.631 |
0.864 |
11 |
16 |
11 |
12 |
21 |
20 |
21 |
16.000 |
17 |
; oligos_5-7nt_m2 versus AtMYB104_I_AthaMYB_rc; m=2/2; ncol2=8; w=6; offset=-2; strand=R; shift=0; score= 16; CAACAGTA---
; cor=0.799; Ncor=0.436; logoDP=1.946; NIcor=-0.004; NsEucl=0.849; SSD=1.631; NSW=0.864; rcor=11; rNcor=16; rlogoDP=11; rNIcor=12; rNsEucl=21; rSSD=20; rNSW=21; rank_mean=16.000; match_rank=17
a 0 1 1 0 1 0 0 1 0 0 0
c 1 0 0 1 0 0 0 0 0 0 0
g 0 0 0 0 0 1 0 0 0 0 0
t 0 0 0 0 0 0 1 0 0 0 0
|