One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 8/regulon8.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o 8/regulon8.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m1_shift1 ; 13 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m1_shift1 (oligos_5-7nt_m1)
; oligos_5-7nt_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wkCTGTTGCdk ; Alignment reference a 0 20 14 3 3 4 3 1 2 5 24 17 c 0 11 15 63 1 4 7 5 2 63 12 17 g 0 15 22 3 3 63 1 2 67 4 18 18 t 0 26 21 3 65 1 61 64 1 0 18 20

AtMYB46_I_AthaMYB_shift1 (AtMYB46_I_AthaMYB) 0.856 0.623 4.869 0.611 0.910 1.029 0.936 3 5 6 3 4 2 2 3.571 1
; oligos_5-7nt_m1 versus AtMYB46_I_AthaMYB; m=1/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 3.5714; -kdCdGTTr--- ; cor=0.856; Ncor=0.623; logoDP=4.869; NIcor=0.611; NsEucl=0.910; SSD=1.029; NSW=0.936; rcor=3; rNcor=5; rlogoDP=6; rNIcor=3; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=3.571; match_rank=1 a 0 0 1 0 1 0 0 0 1 0 0 0 c 0 0 0 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 3 0 0 2 0 0 0 t 0 2 1 0 1 0 3 3 0 0 0 0

RAV1_M00343_TRANSFAC_rc_shift0 (RAV1_M00343_TRANSFAC_rc) 0.902 0.827 1.405 0.047 0.945 0.736 0.967 1 1 13 11 1 1 1 4.143 2
; oligos_5-7nt_m1 versus RAV1_M00343_TRANSFAC_rc; m=2/12; ncol2=12; w=11; offset=-1; strand=R; shift=0; score= 4.1429; twwmTGTTGcwk ; cor=0.902; Ncor=0.827; logoDP=1.405; NIcor=0.047; NsEucl=0.945; SSD=0.736; NSW=0.967; rcor=1; rNcor=1; rlogoDP=13; rNIcor=11; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=4.143; match_rank=2 a 16 19 20 21 0 0 0 0 0 1 14 6 c 17 10 4 32 0 0 3 9 0 35 10 12 g 9 6 4 7 0 69 4 12 62 14 11 17 t 27 34 41 9 69 0 62 47 0 7 16 14

TEM1_M0008_1.02_CISBP_shift2 (TEM1_M0008_1.02_CISBP) 0.842 0.613 5.420 0.596 0.900 1.271 0.921 4 6 4 4 6 5 5 4.857 3
; oligos_5-7nt_m1 versus TEM1_M0008_1.02_CISBP; m=3/12; ncol2=8; w=8; offset=1; strand=D; shift=2; score= 4.8571; --wATGTTGC-- ; cor=0.842; Ncor=0.613; logoDP=5.420; NIcor=0.596; NsEucl=0.900; SSD=1.271; NSW=0.921; rcor=4; rNcor=6; rlogoDP=4; rNIcor=4; rNsEucl=6; rSSD=5; rNSW=5; rank_mean=4.857; match_rank=3 a 0 0 27 76 0 0 0 0 0 0 0 0 c 0 0 0 24 0 0 0 11 0 68 0 0 g 0 0 13 0 0 100 0 2 91 10 0 0 t 0 0 60 0 100 0 100 87 9 22 0 0

EDF3_M0080_1.02_CISBP_rc_shift2 (EDF3_M0080_1.02_CISBP_rc) 0.842 0.612 0.355 -0.091 0.900 1.269 0.921 5 7 15 14 5 4 4 7.714 4
; oligos_5-7nt_m1 versus EDF3_M0080_1.02_CISBP_rc; m=4/12; ncol2=8; w=8; offset=1; strand=R; shift=2; score= 7.7143; --wmTGttgy-- ; cor=0.842; Ncor=0.612; logoDP=0.355; NIcor=-0.091; NsEucl=0.900; SSD=1.269; NSW=0.921; rcor=5; rNcor=7; rlogoDP=15; rNIcor=14; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=7.714; match_rank=4 a 0 0 29 40 5 6 13 6 13 14 0 0 c 0 0 15 36 14 3 12 23 13 39 0 0 g 0 0 17 13 0 87 10 19 53 22 0 0 t 0 0 39 11 81 4 65 52 21 25 0 0

AtMYB104_I_AthaMYB_shift1 (AtMYB104_I_AthaMYB) 0.872 0.634 6.875 0.620 0.890 1.538 0.904 2 4 1 2 14 18 14 7.857 5
; oligos_5-7nt_m1 versus AtMYB104_I_AthaMYB; m=5/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 7.8571; -TACTGTTG--- ; cor=0.872; Ncor=0.634; logoDP=6.875; NIcor=0.620; NsEucl=0.890; SSD=1.538; NSW=0.904; rcor=2; rNcor=4; rlogoDP=1; rNIcor=2; rNsEucl=14; rSSD=18; rNSW=14; rank_mean=7.857; match_rank=5 a 0 0 1 0 0 0 0 0 0 0 0 0 c 0 0 0 1 0 0 0 0 0 0 0 0 g 0 0 0 0 0 1 0 0 1 0 0 0 t 0 1 0 0 1 0 1 1 0 0 0 0

AtMYB101_I_AthaMYB_shift1 (AtMYB101_I_AthaMYB) 0.818 0.595 4.946 0.593 0.897 1.358 0.915 9 10 5 5 8 12 8 8.143 6
; oligos_5-7nt_m1 versus AtMYB101_I_AthaMYB; m=6/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 8.1429; -kwCwGTTr--- ; cor=0.818; Ncor=0.595; logoDP=4.946; NIcor=0.593; NsEucl=0.897; SSD=1.358; NSW=0.915; rcor=9; rNcor=10; rlogoDP=5; rNIcor=5; rNsEucl=8; rSSD=12; rNSW=8; rank_mean=8.143; match_rank=6 a 0 0 1 0 1 0 0 0 1 0 0 0 c 0 0 0 2 0 0 0 0 0 0 0 0 g 0 1 0 0 0 2 0 0 1 0 0 0 t 0 1 1 0 1 0 2 2 0 0 0 0

RAV1_M0077_1.02_CISBP_rc_shift2 (RAV1_M0077_1.02_CISBP_rc) 0.839 0.763 0.194 -0.218 0.919 1.299 0.935 6 2 18 23 2 7 3 8.714 8
; oligos_5-7nt_m1 versus RAV1_M0077_1.02_CISBP_rc; m=7/12; ncol2=10; w=10; offset=1; strand=R; shift=2; score= 8.7143; --wmTGttgywh ; cor=0.839; Ncor=0.763; logoDP=0.194; NIcor=-0.218; NsEucl=0.919; SSD=1.299; NSW=0.935; rcor=6; rNcor=2; rlogoDP=18; rNIcor=23; rNsEucl=2; rSSD=7; rNSW=3; rank_mean=8.714; match_rank=8 a 0 0 28 37 3 7 13 6 13 16 27 26 c 0 0 16 37 14 3 14 22 14 37 24 25 g 0 0 17 14 0 87 11 21 53 21 21 23 t 0 0 39 12 83 3 62 51 20 26 28 26

TEM2_M0013_1.02_CISBP_shift2 (TEM2_M0013_1.02_CISBP) 0.826 0.601 5.970 0.586 0.892 1.483 0.907 8 9 3 6 12 16 12 9.429 9
; oligos_5-7nt_m1 versus TEM2_M0013_1.02_CISBP; m=8/12; ncol2=8; w=8; offset=1; strand=D; shift=2; score= 9.4286; --kATGTTGC-- ; cor=0.826; Ncor=0.601; logoDP=5.970; NIcor=0.586; NsEucl=0.892; SSD=1.483; NSW=0.907; rcor=8; rNcor=9; rlogoDP=3; rNIcor=6; rNsEucl=12; rSSD=16; rNSW=12; rank_mean=9.429; match_rank=9 a 0 0 19 86 0 0 0 0 0 0 0 0 c 0 0 0 14 0 0 0 9 0 72 0 0 g 0 0 25 0 0 100 0 0 100 7 0 0 t 0 0 56 0 100 0 100 91 0 21 0 0

AtMYB37_I_AthaMYB_shift1 (AtMYB37_I_AthaMYB) 0.788 0.573 3.938 0.548 0.897 1.345 0.916 13 12 10 8 7 11 7 9.714 10
; oligos_5-7nt_m1 versus AtMYB37_I_AthaMYB; m=9/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 9.7143; -wtcaGTTr--- ; cor=0.788; Ncor=0.573; logoDP=3.938; NIcor=0.548; NsEucl=0.897; SSD=1.345; NSW=0.916; rcor=13; rNcor=12; rlogoDP=10; rNIcor=8; rNsEucl=7; rSSD=11; rNSW=7; rank_mean=9.714; match_rank=10 a 0 2 1 1 3 0 0 0 2 0 0 0 c 0 0 1 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 5 0 0 3 0 0 0 t 0 2 2 1 1 0 5 5 0 0 0 0

AtMYB60_I_AthaMYB_shift1 (AtMYB60_I_AthaMYB) 0.784 0.570 4.130 0.549 0.895 1.413 0.912 14 13 8 7 9 13 9 10.429 11
; oligos_5-7nt_m1 versus AtMYB60_I_AthaMYB; m=10/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score=10.4286; -ddMdGTTr--- ; cor=0.784; Ncor=0.570; logoDP=4.130; NIcor=0.549; NsEucl=0.895; SSD=1.413; NSW=0.912; rcor=14; rNcor=13; rlogoDP=8; rNIcor=7; rNsEucl=9; rSSD=13; rNSW=9; rank_mean=10.429; match_rank=11 a 0 1 2 1 2 0 0 0 2 0 0 0 c 0 0 0 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 4 0 0 2 0 0 0 t 0 2 1 0 1 0 4 4 0 0 0 0

AtMYB15_I_AthaMYB_shift1 (AtMYB15_I_AthaMYB) 0.777 0.565 3.939 0.544 0.894 1.430 0.911 17 14 9 9 10 14 10 11.857 12
; oligos_5-7nt_m1 versus AtMYB15_I_AthaMYB; m=11/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score=11.8571; -wwcaGTTr--- ; cor=0.777; Ncor=0.565; logoDP=3.939; NIcor=0.544; NsEucl=0.894; SSD=1.430; NSW=0.911; rcor=17; rNcor=14; rlogoDP=9; rNIcor=9; rNsEucl=10; rSSD=14; rNSW=10; rank_mean=11.857; match_rank=12 a 0 2 2 1 3 0 0 0 2 0 0 0 c 0 0 0 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 5 0 0 3 0 0 0 t 0 2 2 1 1 0 5 5 0 0 0 0

EDF3_M0081_1.02_CISBP_rc_shift2 (EDF3_M0081_1.02_CISBP_rc) 0.828 0.603 1.621 -0.069 0.891 1.526 0.905 7 8 12 13 13 17 13 11.857 13
; oligos_5-7nt_m1 versus EDF3_M0081_1.02_CISBP_rc; m=12/12; ncol2=8; w=8; offset=1; strand=R; shift=2; score=11.8571; --TmTGTTGy-- ; cor=0.828; Ncor=0.603; logoDP=1.621; NIcor=-0.069; NsEucl=0.891; SSD=1.526; NSW=0.905; rcor=7; rNcor=8; rlogoDP=12; rNIcor=13; rNsEucl=13; rSSD=17; rNSW=13; rank_mean=11.857; match_rank=13 a 0 0 15 67 0 0 0 0 0 0 0 0 c 0 0 0 33 0 0 0 0 0 57 0 0 g 0 0 0 0 0 100 0 0 100 0 0 0 t 0 0 85 0 100 0 100 100 0 43 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m1_shift1 (oligos_5-7nt_m1)																	; oligos_5-7nt_m1; m=0 (reference); ncol1=11; shift=1; ncol=12; -wkCTGTTGCdk ; Alignment reference a 0 20 14 3 3 4 3 1 2 5 24 17 c 0 11 15 63 1 4 7 5 2 63 12 17 g 0 15 22 3 3 63 1 2 67 4 18 18 t 0 26 21 3 65 1 61 64 1 0 18 20
AtMYB46_I_AthaMYB_shift1 (AtMYB46_I_AthaMYB)	0.856	0.623	4.869	0.611	0.910	1.029	0.936	3	5	6	3	4	2	2	3.571	1	; oligos_5-7nt_m1 versus AtMYB46_I_AthaMYB; m=1/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 3.5714; -kdCdGTTr--- ; cor=0.856; Ncor=0.623; logoDP=4.869; NIcor=0.611; NsEucl=0.910; SSD=1.029; NSW=0.936; rcor=3; rNcor=5; rlogoDP=6; rNIcor=3; rNsEucl=4; rSSD=2; rNSW=2; rank_mean=3.571; match_rank=1 a 0 0 1 0 1 0 0 0 1 0 0 0 c 0 0 0 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 3 0 0 2 0 0 0 t 0 2 1 0 1 0 3 3 0 0 0 0
RAV1_M00343_TRANSFAC_rc_shift0 (RAV1_M00343_TRANSFAC_rc)	0.902	0.827	1.405	0.047	0.945	0.736	0.967	1	1	13	11	1	1	1	4.143	2	; oligos_5-7nt_m1 versus RAV1_M00343_TRANSFAC_rc; m=2/12; ncol2=12; w=11; offset=-1; strand=R; shift=0; score= 4.1429; twwmTGTTGcwk ; cor=0.902; Ncor=0.827; logoDP=1.405; NIcor=0.047; NsEucl=0.945; SSD=0.736; NSW=0.967; rcor=1; rNcor=1; rlogoDP=13; rNIcor=11; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=4.143; match_rank=2 a 16 19 20 21 0 0 0 0 0 1 14 6 c 17 10 4 32 0 0 3 9 0 35 10 12 g 9 6 4 7 0 69 4 12 62 14 11 17 t 27 34 41 9 69 0 62 47 0 7 16 14
TEM1_M0008_1.02_CISBP_shift2 (TEM1_M0008_1.02_CISBP)	0.842	0.613	5.420	0.596	0.900	1.271	0.921	4	6	4	4	6	5	5	4.857	3	; oligos_5-7nt_m1 versus TEM1_M0008_1.02_CISBP; m=3/12; ncol2=8; w=8; offset=1; strand=D; shift=2; score= 4.8571; --wATGTTGC-- ; cor=0.842; Ncor=0.613; logoDP=5.420; NIcor=0.596; NsEucl=0.900; SSD=1.271; NSW=0.921; rcor=4; rNcor=6; rlogoDP=4; rNIcor=4; rNsEucl=6; rSSD=5; rNSW=5; rank_mean=4.857; match_rank=3 a 0 0 27 76 0 0 0 0 0 0 0 0 c 0 0 0 24 0 0 0 11 0 68 0 0 g 0 0 13 0 0 100 0 2 91 10 0 0 t 0 0 60 0 100 0 100 87 9 22 0 0
EDF3_M0080_1.02_CISBP_rc_shift2 (EDF3_M0080_1.02_CISBP_rc)	0.842	0.612	0.355	-0.091	0.900	1.269	0.921	5	7	15	14	5	4	4	7.714	4	; oligos_5-7nt_m1 versus EDF3_M0080_1.02_CISBP_rc; m=4/12; ncol2=8; w=8; offset=1; strand=R; shift=2; score= 7.7143; --wmTGttgy-- ; cor=0.842; Ncor=0.612; logoDP=0.355; NIcor=-0.091; NsEucl=0.900; SSD=1.269; NSW=0.921; rcor=5; rNcor=7; rlogoDP=15; rNIcor=14; rNsEucl=5; rSSD=4; rNSW=4; rank_mean=7.714; match_rank=4 a 0 0 29 40 5 6 13 6 13 14 0 0 c 0 0 15 36 14 3 12 23 13 39 0 0 g 0 0 17 13 0 87 10 19 53 22 0 0 t 0 0 39 11 81 4 65 52 21 25 0 0
AtMYB104_I_AthaMYB_shift1 (AtMYB104_I_AthaMYB)	0.872	0.634	6.875	0.620	0.890	1.538	0.904	2	4	1	2	14	18	14	7.857	5	; oligos_5-7nt_m1 versus AtMYB104_I_AthaMYB; m=5/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 7.8571; -TACTGTTG--- ; cor=0.872; Ncor=0.634; logoDP=6.875; NIcor=0.620; NsEucl=0.890; SSD=1.538; NSW=0.904; rcor=2; rNcor=4; rlogoDP=1; rNIcor=2; rNsEucl=14; rSSD=18; rNSW=14; rank_mean=7.857; match_rank=5 a 0 0 1 0 0 0 0 0 0 0 0 0 c 0 0 0 1 0 0 0 0 0 0 0 0 g 0 0 0 0 0 1 0 0 1 0 0 0 t 0 1 0 0 1 0 1 1 0 0 0 0
AtMYB101_I_AthaMYB_shift1 (AtMYB101_I_AthaMYB)	0.818	0.595	4.946	0.593	0.897	1.358	0.915	9	10	5	5	8	12	8	8.143	6	; oligos_5-7nt_m1 versus AtMYB101_I_AthaMYB; m=6/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 8.1429; -kwCwGTTr--- ; cor=0.818; Ncor=0.595; logoDP=4.946; NIcor=0.593; NsEucl=0.897; SSD=1.358; NSW=0.915; rcor=9; rNcor=10; rlogoDP=5; rNIcor=5; rNsEucl=8; rSSD=12; rNSW=8; rank_mean=8.143; match_rank=6 a 0 0 1 0 1 0 0 0 1 0 0 0 c 0 0 0 2 0 0 0 0 0 0 0 0 g 0 1 0 0 0 2 0 0 1 0 0 0 t 0 1 1 0 1 0 2 2 0 0 0 0
RAV1_M0077_1.02_CISBP_rc_shift2 (RAV1_M0077_1.02_CISBP_rc)	0.839	0.763	0.194	-0.218	0.919	1.299	0.935	6	2	18	23	2	7	3	8.714	8	; oligos_5-7nt_m1 versus RAV1_M0077_1.02_CISBP_rc; m=7/12; ncol2=10; w=10; offset=1; strand=R; shift=2; score= 8.7143; --wmTGttgywh ; cor=0.839; Ncor=0.763; logoDP=0.194; NIcor=-0.218; NsEucl=0.919; SSD=1.299; NSW=0.935; rcor=6; rNcor=2; rlogoDP=18; rNIcor=23; rNsEucl=2; rSSD=7; rNSW=3; rank_mean=8.714; match_rank=8 a 0 0 28 37 3 7 13 6 13 16 27 26 c 0 0 16 37 14 3 14 22 14 37 24 25 g 0 0 17 14 0 87 11 21 53 21 21 23 t 0 0 39 12 83 3 62 51 20 26 28 26
TEM2_M0013_1.02_CISBP_shift2 (TEM2_M0013_1.02_CISBP)	0.826	0.601	5.970	0.586	0.892	1.483	0.907	8	9	3	6	12	16	12	9.429	9	; oligos_5-7nt_m1 versus TEM2_M0013_1.02_CISBP; m=8/12; ncol2=8; w=8; offset=1; strand=D; shift=2; score= 9.4286; --kATGTTGC-- ; cor=0.826; Ncor=0.601; logoDP=5.970; NIcor=0.586; NsEucl=0.892; SSD=1.483; NSW=0.907; rcor=8; rNcor=9; rlogoDP=3; rNIcor=6; rNsEucl=12; rSSD=16; rNSW=12; rank_mean=9.429; match_rank=9 a 0 0 19 86 0 0 0 0 0 0 0 0 c 0 0 0 14 0 0 0 9 0 72 0 0 g 0 0 25 0 0 100 0 0 100 7 0 0 t 0 0 56 0 100 0 100 91 0 21 0 0
AtMYB37_I_AthaMYB_shift1 (AtMYB37_I_AthaMYB)	0.788	0.573	3.938	0.548	0.897	1.345	0.916	13	12	10	8	7	11	7	9.714	10	; oligos_5-7nt_m1 versus AtMYB37_I_AthaMYB; m=9/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score= 9.7143; -wtcaGTTr--- ; cor=0.788; Ncor=0.573; logoDP=3.938; NIcor=0.548; NsEucl=0.897; SSD=1.345; NSW=0.916; rcor=13; rNcor=12; rlogoDP=10; rNIcor=8; rNsEucl=7; rSSD=11; rNSW=7; rank_mean=9.714; match_rank=10 a 0 2 1 1 3 0 0 0 2 0 0 0 c 0 0 1 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 5 0 0 3 0 0 0 t 0 2 2 1 1 0 5 5 0 0 0 0
AtMYB60_I_AthaMYB_shift1 (AtMYB60_I_AthaMYB)	0.784	0.570	4.130	0.549	0.895	1.413	0.912	14	13	8	7	9	13	9	10.429	11	; oligos_5-7nt_m1 versus AtMYB60_I_AthaMYB; m=10/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score=10.4286; -ddMdGTTr--- ; cor=0.784; Ncor=0.570; logoDP=4.130; NIcor=0.549; NsEucl=0.895; SSD=1.413; NSW=0.912; rcor=14; rNcor=13; rlogoDP=8; rNIcor=7; rNsEucl=9; rSSD=13; rNSW=9; rank_mean=10.429; match_rank=11 a 0 1 2 1 2 0 0 0 2 0 0 0 c 0 0 0 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 4 0 0 2 0 0 0 t 0 2 1 0 1 0 4 4 0 0 0 0
AtMYB15_I_AthaMYB_shift1 (AtMYB15_I_AthaMYB)	0.777	0.565	3.939	0.544	0.894	1.430	0.911	17	14	9	9	10	14	10	11.857	12	; oligos_5-7nt_m1 versus AtMYB15_I_AthaMYB; m=11/12; ncol2=8; w=8; offset=0; strand=D; shift=1; score=11.8571; -wwcaGTTr--- ; cor=0.777; Ncor=0.565; logoDP=3.939; NIcor=0.544; NsEucl=0.894; SSD=1.430; NSW=0.911; rcor=17; rNcor=14; rlogoDP=9; rNIcor=9; rNsEucl=10; rSSD=14; rNSW=10; rank_mean=11.857; match_rank=12 a 0 2 2 1 3 0 0 0 2 0 0 0 c 0 0 0 3 0 0 0 0 0 0 0 0 g 0 1 1 0 1 5 0 0 3 0 0 0 t 0 2 2 1 1 0 5 5 0 0 0 0
EDF3_M0081_1.02_CISBP_rc_shift2 (EDF3_M0081_1.02_CISBP_rc)	0.828	0.603	1.621	-0.069	0.891	1.526	0.905	7	8	12	13	13	17	13	11.857	13	; oligos_5-7nt_m1 versus EDF3_M0081_1.02_CISBP_rc; m=12/12; ncol2=8; w=8; offset=1; strand=R; shift=2; score=11.8571; --TmTGTTGy-- ; cor=0.828; Ncor=0.603; logoDP=1.621; NIcor=-0.069; NsEucl=0.891; SSD=1.526; NSW=0.905; rcor=7; rNcor=8; rlogoDP=12; rNIcor=13; rNsEucl=13; rSSD=17; rNSW=13; rank_mean=11.857; match_rank=13 a 0 0 15 67 0 0 0 0 0 0 0 0 c 0 0 0 33 0 0 0 0 0 57 0 0 g 0 0 0 0 0 100 0 0 100 0 0 0 t 0 0 85 0 100 0 100 100 0 43 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m5_shift0 ; 3 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m5_shift0 (oligos_5-7nt_m5)
; oligos_5-7nt_m5; m=0 (reference); ncol1=11; shift=0; ncol=13; amATAACCCww-- ; Alignment reference a 29 19 67 3 66 61 3 5 5 24 24 0 0 c 15 21 3 8 1 2 67 65 63 17 17 0 0 g 16 15 0 3 3 3 1 0 1 12 10 0 0 t 13 18 3 59 3 7 2 3 4 20 22 0 0

XM_002876896.1_M1282_1.02_CISBP_shift0 (XM_002876896.1_M1282_1.02_CISBP) 0.773 0.654 4.486 0.638 0.915 1.763 0.920 18 3 7 1 3 21 6 8.429 7
; oligos_5-7nt_m5 versus XM_002876896.1_M1282_1.02_CISBP; m=1/2; ncol2=13; w=11; offset=0; strand=D; shift=0; score= 8.4286; ggytAACCCCywt ; cor=0.773; Ncor=0.654; logoDP=4.486; NIcor=0.638; NsEucl=0.915; SSD=1.763; NSW=0.920; rcor=18; rNcor=3; rlogoDP=7; rNIcor=1; rNsEucl=3; rSSD=21; rNSW=6; rank_mean=8.429; match_rank=7 a 21 21 20 19 76 100 0 0 4 4 6 25 21 c 22 22 28 20 14 0 100 100 89 88 55 15 20 g 36 36 19 10 5 0 0 0 4 4 5 24 20 t 21 21 33 51 5 0 0 0 3 4 34 36 39

AtMYB1_II_AthaMYB_rc_shift3 (AtMYB1_II_AthaMYB_rc) 0.780 0.425 0.316 -0.186 0.843 1.774 0.852 15 18 16 22 22 22 22 19.571 23
; oligos_5-7nt_m5 versus AtMYB1_II_AthaMYB_rc; m=2/2; ncol2=6; w=6; offset=3; strand=R; shift=3; score=19.5714; ---TAACCT---- ; cor=0.780; Ncor=0.425; logoDP=0.316; NIcor=-0.186; NsEucl=0.843; SSD=1.774; NSW=0.852; rcor=15; rNcor=18; rlogoDP=16; rNIcor=22; rNsEucl=22; rSSD=22; rNSW=22; rank_mean=19.571; match_rank=23 a 0 0 0 0 1 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 1 1 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 1 0 0 0 0 1 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m5_shift0 (oligos_5-7nt_m5)																	; oligos_5-7nt_m5; m=0 (reference); ncol1=11; shift=0; ncol=13; amATAACCCww-- ; Alignment reference a 29 19 67 3 66 61 3 5 5 24 24 0 0 c 15 21 3 8 1 2 67 65 63 17 17 0 0 g 16 15 0 3 3 3 1 0 1 12 10 0 0 t 13 18 3 59 3 7 2 3 4 20 22 0 0
XM_002876896.1_M1282_1.02_CISBP_shift0 (XM_002876896.1_M1282_1.02_CISBP)	0.773	0.654	4.486	0.638	0.915	1.763	0.920	18	3	7	1	3	21	6	8.429	7	; oligos_5-7nt_m5 versus XM_002876896.1_M1282_1.02_CISBP; m=1/2; ncol2=13; w=11; offset=0; strand=D; shift=0; score= 8.4286; ggytAACCCCywt ; cor=0.773; Ncor=0.654; logoDP=4.486; NIcor=0.638; NsEucl=0.915; SSD=1.763; NSW=0.920; rcor=18; rNcor=3; rlogoDP=7; rNIcor=1; rNsEucl=3; rSSD=21; rNSW=6; rank_mean=8.429; match_rank=7 a 21 21 20 19 76 100 0 0 4 4 6 25 21 c 22 22 28 20 14 0 100 100 89 88 55 15 20 g 36 36 19 10 5 0 0 0 4 4 5 24 20 t 21 21 33 51 5 0 0 0 3 4 34 36 39
AtMYB1_II_AthaMYB_rc_shift3 (AtMYB1_II_AthaMYB_rc)	0.780	0.425	0.316	-0.186	0.843	1.774	0.852	15	18	16	22	22	22	22	19.571	23	; oligos_5-7nt_m5 versus AtMYB1_II_AthaMYB_rc; m=2/2; ncol2=6; w=6; offset=3; strand=R; shift=3; score=19.5714; ---TAACCT---- ; cor=0.780; Ncor=0.425; logoDP=0.316; NIcor=-0.186; NsEucl=0.843; SSD=1.774; NSW=0.852; rcor=15; rNcor=18; rlogoDP=16; rNIcor=22; rNsEucl=22; rSSD=22; rNSW=22; rank_mean=19.571; match_rank=23 a 0 0 0 0 1 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 1 1 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 t 0 0 0 1 0 0 0 0 1 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m3_shift2 ; 3 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3)
; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=11; --grAGGGGmk ; Alignment reference a 0 0 15 20 79 0 0 0 0 29 16 c 0 0 18 14 0 0 0 0 0 21 15 g 0 0 31 32 0 79 79 79 79 16 27 t 0 0 15 13 0 0 0 0 0 13 21

1200010153_M1391_1.02_CISBP_rc_shift0 (1200010153_M1391_1.02_CISBP_rc) 0.807 0.587 0.212 -0.136 0.894 1.444 0.910 10 11 17 21 11 15 11 13.714 14
; oligos_5-7nt_m3 versus 1200010153_M1391_1.02_CISBP_rc; m=1/2; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=13.7143; rryTAGGGkt- ; cor=0.807; Ncor=0.587; logoDP=0.212; NIcor=-0.136; NsEucl=0.894; SSD=1.444; NSW=0.910; rcor=10; rNcor=11; rlogoDP=17; rNIcor=21; rNsEucl=11; rSSD=15; rNSW=11; rank_mean=13.714; match_rank=14 a 33 33 12 3 95 0 0 0 8 24 0 c 18 18 42 6 0 0 1 0 3 8 0 g 26 25 17 1 5 98 98 87 60 5 0 t 23 24 29 90 0 2 1 13 29 63 0

ASR-1_M01161_TRANSFAC_rc_shift4 (ASR-1_M01161_TRANSFAC_rc) 0.757 0.421 0.700 -0.101 0.821 1.600 0.840 22 20 14 15 23 19 23 19.429 22
; oligos_5-7nt_m3 versus ASR-1_M01161_TRANSFAC_rc; m=2/2; ncol2=5; w=5; offset=2; strand=R; shift=4; score=19.4286; ----wsGGk-- ; cor=0.757; Ncor=0.421; logoDP=0.700; NIcor=-0.101; NsEucl=0.821; SSD=1.600; NSW=0.840; rcor=22; rNcor=20; rlogoDP=14; rNIcor=15; rNsEucl=23; rSSD=19; rNSW=23; rank_mean=19.429; match_rank=22 a 0 0 0 0 7 0 0 0 1 0 0 c 0 0 0 0 0 7 0 1 1 0 0 g 0 0 0 0 2 13 20 19 8 0 0 t 0 0 0 0 11 0 0 0 10 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m3_shift2 (oligos_5-7nt_m3)																	; oligos_5-7nt_m3; m=0 (reference); ncol1=9; shift=2; ncol=11; --grAGGGGmk ; Alignment reference a 0 0 15 20 79 0 0 0 0 29 16 c 0 0 18 14 0 0 0 0 0 21 15 g 0 0 31 32 0 79 79 79 79 16 27 t 0 0 15 13 0 0 0 0 0 13 21
1200010153_M1391_1.02_CISBP_rc_shift0 (1200010153_M1391_1.02_CISBP_rc)	0.807	0.587	0.212	-0.136	0.894	1.444	0.910	10	11	17	21	11	15	11	13.714	14	; oligos_5-7nt_m3 versus 1200010153_M1391_1.02_CISBP_rc; m=1/2; ncol2=10; w=8; offset=-2; strand=R; shift=0; score=13.7143; rryTAGGGkt- ; cor=0.807; Ncor=0.587; logoDP=0.212; NIcor=-0.136; NsEucl=0.894; SSD=1.444; NSW=0.910; rcor=10; rNcor=11; rlogoDP=17; rNIcor=21; rNsEucl=11; rSSD=15; rNSW=11; rank_mean=13.714; match_rank=14 a 33 33 12 3 95 0 0 0 8 24 0 c 18 18 42 6 0 0 1 0 3 8 0 g 26 25 17 1 5 98 98 87 60 5 0 t 23 24 29 90 0 2 1 13 29 63 0
ASR-1_M01161_TRANSFAC_rc_shift4 (ASR-1_M01161_TRANSFAC_rc)	0.757	0.421	0.700	-0.101	0.821	1.600	0.840	22	20	14	15	23	19	23	19.429	22	; oligos_5-7nt_m3 versus ASR-1_M01161_TRANSFAC_rc; m=2/2; ncol2=5; w=5; offset=2; strand=R; shift=4; score=19.4286; ----wsGGk-- ; cor=0.757; Ncor=0.421; logoDP=0.700; NIcor=-0.101; NsEucl=0.821; SSD=1.600; NSW=0.840; rcor=22; rNcor=20; rlogoDP=14; rNIcor=15; rNsEucl=23; rSSD=19; rNSW=23; rank_mean=19.429; match_rank=22 a 0 0 0 0 7 0 0 0 1 0 0 c 0 0 0 0 0 7 0 1 1 0 0 g 0 0 0 0 2 13 20 19 8 0 0 t 0 0 0 0 11 0 0 0 10 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m4_shift1 ; 6 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m4_shift1 (oligos_5-7nt_m4)
; oligos_5-7nt_m4; m=0 (reference); ncol1=10; shift=1; ncol=11; -mhACTCTAmr ; Alignment reference a 0 8 9 25 0 0 0 0 27 10 8 c 0 10 7 0 27 0 27 0 0 7 6 g 0 4 2 1 0 1 0 0 0 4 7 t 0 5 9 1 0 26 0 27 0 6 6

RHL41_M0377_1.02_CISBP_rc_shift0 (RHL41_M0377_1.02_CISBP_rc) 0.792 0.432 0.072 -0.129 0.871 1.192 0.901 12 17 23 18 16 3 15 14.857 15
; oligos_5-7nt_m4 versus RHL41_M0377_1.02_CISBP_rc; m=1/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=14.8571; hwyASwy---- ; cor=0.792; Ncor=0.432; logoDP=0.072; NIcor=-0.129; NsEucl=0.871; SSD=1.192; NSW=0.901; rcor=12; rNcor=17; rlogoDP=23; rNIcor=18; rNsEucl=16; rSSD=3; rNSW=15; rank_mean=14.857; match_rank=15 a 25 28 17 75 1 27 21 0 0 0 0 c 26 24 45 0 69 8 30 0 0 0 0 g 23 20 12 24 28 2 24 0 0 0 0 t 26 28 26 1 2 63 25 0 0 0 0

RBE_M0376_1.02_CISBP_rc_shift0 (RBE_M0376_1.02_CISBP_rc) 0.767 0.418 0.097 -0.134 0.866 1.292 0.892 19 21 20 20 17 6 16 17.000 18
; oligos_5-7nt_m4 versus RBE_M0376_1.02_CISBP_rc; m=2/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score= 17; dymAsWy---- ; cor=0.767; Ncor=0.418; logoDP=0.097; NIcor=-0.134; NsEucl=0.866; SSD=1.292; NSW=0.892; rcor=19; rNcor=21; rlogoDP=20; rNIcor=20; rNsEucl=17; rSSD=6; rNSW=16; rank_mean=17.000; match_rank=18 a 30 24 33 79 0 29 24 0 0 0 0 c 19 27 31 3 56 0 26 0 0 0 0 g 25 17 15 13 34 2 24 0 0 0 0 t 26 32 21 5 10 69 26 0 0 0 0

STZ_M0370_1.02_CISBP_rc_shift0 (STZ_M0370_1.02_CISBP_rc) 0.759 0.414 0.121 -0.115 0.865 1.310 0.891 20 22 19 16 18 8 17 17.143 19
; oligos_5-7nt_m4 versus STZ_M0370_1.02_CISBP_rc; m=3/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.1429; ywyAsTc---- ; cor=0.759; Ncor=0.414; logoDP=0.121; NIcor=-0.115; NsEucl=0.865; SSD=1.310; NSW=0.891; rcor=20; rNcor=22; rlogoDP=19; rNIcor=16; rNsEucl=18; rSSD=8; rNSW=17; rank_mean=17.143; match_rank=19 a 24 32 15 78 2 18 23 0 0 0 0 c 25 22 51 0 52 10 31 0 0 0 0 g 23 16 6 15 38 4 23 0 0 0 0 t 28 30 28 7 8 68 23 0 0 0 0

AT5G04390_M0375_1.02_CISBP_rc_shift0 (AT5G04390_M0375_1.02_CISBP_rc) 0.778 0.425 0.088 -0.132 0.865 1.312 0.891 16 19 22 19 19 9 18 17.429 20
; oligos_5-7nt_m4 versus AT5G04390_M0375_1.02_CISBP_rc; m=4/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.4286; kwyRsty---- ; cor=0.778; Ncor=0.425; logoDP=0.088; NIcor=-0.132; NsEucl=0.865; SSD=1.312; NSW=0.891; rcor=16; rNcor=19; rlogoDP=22; rNIcor=19; rNsEucl=19; rSSD=9; rNSW=18; rank_mean=17.429; match_rank=20 a 24 28 20 69 4 23 22 0 0 0 0 c 24 23 40 0 56 8 29 0 0 0 0 g 25 19 8 25 34 3 24 0 0 0 0 t 27 30 32 6 6 66 25 0 0 0 0

AT3G53600_M0374_1.02_CISBP_rc_shift0 (AT3G53600_M0374_1.02_CISBP_rc) 0.758 0.413 0.091 -0.126 0.864 1.325 0.890 21 23 21 17 20 10 19 18.714 21
; oligos_5-7nt_m4 versus AT3G53600_M0374_1.02_CISBP_rc; m=5/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=18.7143; hwyAswc---- ; cor=0.758; Ncor=0.413; logoDP=0.091; NIcor=-0.126; NsEucl=0.864; SSD=1.325; NSW=0.890; rcor=21; rNcor=23; rlogoDP=21; rNIcor=17; rNsEucl=20; rSSD=10; rNSW=19; rank_mean=18.714; match_rank=21 a 25 30 16 79 3 26 23 0 0 0 0 c 26 24 48 0 59 13 30 0 0 0 0 g 24 18 9 18 36 2 23 0 0 0 0 t 25 28 27 3 2 59 24 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m4_shift1 (oligos_5-7nt_m4)																	; oligos_5-7nt_m4; m=0 (reference); ncol1=10; shift=1; ncol=11; -mhACTCTAmr ; Alignment reference a 0 8 9 25 0 0 0 0 27 10 8 c 0 10 7 0 27 0 27 0 0 7 6 g 0 4 2 1 0 1 0 0 0 4 7 t 0 5 9 1 0 26 0 27 0 6 6
RHL41_M0377_1.02_CISBP_rc_shift0 (RHL41_M0377_1.02_CISBP_rc)	0.792	0.432	0.072	-0.129	0.871	1.192	0.901	12	17	23	18	16	3	15	14.857	15	; oligos_5-7nt_m4 versus RHL41_M0377_1.02_CISBP_rc; m=1/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=14.8571; hwyASwy---- ; cor=0.792; Ncor=0.432; logoDP=0.072; NIcor=-0.129; NsEucl=0.871; SSD=1.192; NSW=0.901; rcor=12; rNcor=17; rlogoDP=23; rNIcor=18; rNsEucl=16; rSSD=3; rNSW=15; rank_mean=14.857; match_rank=15 a 25 28 17 75 1 27 21 0 0 0 0 c 26 24 45 0 69 8 30 0 0 0 0 g 23 20 12 24 28 2 24 0 0 0 0 t 26 28 26 1 2 63 25 0 0 0 0
RBE_M0376_1.02_CISBP_rc_shift0 (RBE_M0376_1.02_CISBP_rc)	0.767	0.418	0.097	-0.134	0.866	1.292	0.892	19	21	20	20	17	6	16	17.000	18	; oligos_5-7nt_m4 versus RBE_M0376_1.02_CISBP_rc; m=2/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score= 17; dymAsWy---- ; cor=0.767; Ncor=0.418; logoDP=0.097; NIcor=-0.134; NsEucl=0.866; SSD=1.292; NSW=0.892; rcor=19; rNcor=21; rlogoDP=20; rNIcor=20; rNsEucl=17; rSSD=6; rNSW=16; rank_mean=17.000; match_rank=18 a 30 24 33 79 0 29 24 0 0 0 0 c 19 27 31 3 56 0 26 0 0 0 0 g 25 17 15 13 34 2 24 0 0 0 0 t 26 32 21 5 10 69 26 0 0 0 0
STZ_M0370_1.02_CISBP_rc_shift0 (STZ_M0370_1.02_CISBP_rc)	0.759	0.414	0.121	-0.115	0.865	1.310	0.891	20	22	19	16	18	8	17	17.143	19	; oligos_5-7nt_m4 versus STZ_M0370_1.02_CISBP_rc; m=3/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.1429; ywyAsTc---- ; cor=0.759; Ncor=0.414; logoDP=0.121; NIcor=-0.115; NsEucl=0.865; SSD=1.310; NSW=0.891; rcor=20; rNcor=22; rlogoDP=19; rNIcor=16; rNsEucl=18; rSSD=8; rNSW=17; rank_mean=17.143; match_rank=19 a 24 32 15 78 2 18 23 0 0 0 0 c 25 22 51 0 52 10 31 0 0 0 0 g 23 16 6 15 38 4 23 0 0 0 0 t 28 30 28 7 8 68 23 0 0 0 0
AT5G04390_M0375_1.02_CISBP_rc_shift0 (AT5G04390_M0375_1.02_CISBP_rc)	0.778	0.425	0.088	-0.132	0.865	1.312	0.891	16	19	22	19	19	9	18	17.429	20	; oligos_5-7nt_m4 versus AT5G04390_M0375_1.02_CISBP_rc; m=4/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=17.4286; kwyRsty---- ; cor=0.778; Ncor=0.425; logoDP=0.088; NIcor=-0.132; NsEucl=0.865; SSD=1.312; NSW=0.891; rcor=16; rNcor=19; rlogoDP=22; rNIcor=19; rNsEucl=19; rSSD=9; rNSW=18; rank_mean=17.429; match_rank=20 a 24 28 20 69 4 23 22 0 0 0 0 c 24 23 40 0 56 8 29 0 0 0 0 g 25 19 8 25 34 3 24 0 0 0 0 t 27 30 32 6 6 66 25 0 0 0 0
AT3G53600_M0374_1.02_CISBP_rc_shift0 (AT3G53600_M0374_1.02_CISBP_rc)	0.758	0.413	0.091	-0.126	0.864	1.325	0.890	21	23	21	17	20	10	19	18.714	21	; oligos_5-7nt_m4 versus AT3G53600_M0374_1.02_CISBP_rc; m=5/5; ncol2=7; w=6; offset=-1; strand=R; shift=0; score=18.7143; hwyAswc---- ; cor=0.758; Ncor=0.413; logoDP=0.091; NIcor=-0.126; NsEucl=0.864; SSD=1.325; NSW=0.890; rcor=21; rNcor=23; rlogoDP=21; rNIcor=17; rNsEucl=20; rSSD=10; rNSW=19; rank_mean=18.714; match_rank=21 a 25 30 16 79 3 26 23 0 0 0 0 c 26 24 48 0 59 13 30 0 0 0 0 g 24 18 9 18 36 2 23 0 0 0 0 t 25 28 27 3 2 59 24 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m2_shift2 ; 3 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m2_shift2 (oligos_5-7nt_m2)
; oligos_5-7nt_m2; m=0 (reference); ncol1=9; shift=2; ncol=11; --wrAGTATtw ; Alignment reference a 0 0 23 25 73 0 0 73 0 18 19 c 0 0 18 10 0 0 0 0 0 15 14 g 0 0 12 21 0 73 0 0 0 15 13 t 0 0 20 17 0 0 73 0 73 25 27

SPF1_M00702_TRANSFAC_shift0 (SPF1_M00702_TRANSFAC) 0.757 0.550 6.601 0.523 0.878 1.909 0.881 23 15 2 10 15 23 20 15.429 16
; oligos_5-7nt_m2 versus SPF1_M00702_TRANSFAC; m=1/2; ncol2=10; w=8; offset=-2; strand=D; shift=0; score=15.4286; wmAYAGTAww- ; cor=0.757; Ncor=0.550; logoDP=6.601; NIcor=0.523; NsEucl=0.878; SSD=1.909; NSW=0.881; rcor=23; rNcor=15; rlogoDP=2; rNIcor=10; rNsEucl=15; rSSD=23; rNSW=20; rank_mean=15.429; match_rank=16 a 4 4 7 0 7 0 0 5 3 3 0 c 0 3 0 2 0 0 0 1 0 0 0 g 0 0 0 0 0 7 0 1 1 0 0 t 3 0 0 5 0 0 7 0 3 4 0

AtMYB104_I_AthaMYB_rc_shift0 (AtMYB104_I_AthaMYB_rc) 0.799 0.436 1.946 -0.004 0.849 1.631 0.864 11 16 11 12 21 20 21 16.000 17
; oligos_5-7nt_m2 versus AtMYB104_I_AthaMYB_rc; m=2/2; ncol2=8; w=6; offset=-2; strand=R; shift=0; score= 16; CAACAGTA--- ; cor=0.799; Ncor=0.436; logoDP=1.946; NIcor=-0.004; NsEucl=0.849; SSD=1.631; NSW=0.864; rcor=11; rNcor=16; rlogoDP=11; rNIcor=12; rNsEucl=21; rSSD=20; rNSW=21; rank_mean=16.000; match_rank=17 a 0 1 1 0 1 0 0 1 0 0 0 c 1 0 0 1 0 0 0 0 0 0 0 g 0 0 0 0 0 1 0 0 0 0 0 t 0 0 0 0 0 0 1 0 0 0 0