9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 9/regulon9.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o 9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab
 Program version       	1.118
 Slow mode 
 Input files
	file2 	$RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf
	file1 	9/regulon9.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf
 Output files
	alignments_1ton	9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.tab
	match_table_txt	9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab
	html_index   	9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_index.html
	alignments_1ton_html	9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.html
	match_table_html	9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.html
	prefix       	9/regulon9.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB
 Matrices
	file1	10 matrices	9/regulon9.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf
		file1	1	12	72	wrggAAAATAwh
		file1	2	15	40	wrkgAAAATATCTyb
		file1	3	16	18	wbtATTTTAAAATavw
		file1	4	15	38	wakgAAAATAcaAsm
		file1	5	10	22	awATACCAyk
		file1	6	12	54	raAAAkaTCTwm
		file1	7	13	75	wwAATTTmAAAww
		file1	8	11	83	wwtAAAATAwh
		file1	9	21	50	waAAAkwTCTwwTtawawwww
		file1	10	24	53	wwwtdArAwaTyTwmwawmhwhww
	file2	1055 matrices	$RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf
		file2		1		16		5		TCATTCCACGTAGATr
		file2		2		8		5		awmAGTTr
		file2		3		8		3		rkTAGTTr
		file2		4		8		5		wamaGTTr
		file2		5		8		1		GTTAGTTA
		file2		6		8		2		kwCwGTTr
		file2		7		8		2		GTTAGTTr
		file2		8		8		6		wwmaGTTr
		file2		9		8		2		rsTkGTTr
		file2		10		8		8		RkTwGKTr
		file2		11		8		1		TACTGTTG
		...	1045 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
dyads_test_vs_ctrl_m1 RVE1_RVE1_ArabidopsisPBM dyads_test_vs_ctrl_m1 RVE1_RVE1_ArabidopsisPBM 0.931 0.775 8.001 0.756 0.964 0.7276 0.93969 12 10 10 12 0.8333 0.8333 1.0000 D 1 .aAAAkaTCTw. wAAATATCTk 6 2 7 2 4 8 4 4.7143 1
oligos_5-7nt_m2 RVE1_RVE1_ArabidopsisPBM oligos_5-7nt_m2 RVE1_RVE1_ArabidopsisPBM 0.971 0.647 7.651 0.638 0.984 0.3144 0.96035 15 10 10 15 0.6667 0.6667 1.0000 D 4 ....AAAATATCTy. wAAATATCTk 2 9 10 6 2 2 2 4.7143 2
dyads_test_vs_ctrl_m1 CCA1_CCA1_ArabidopsisPBM dyads_test_vs_ctrl_m1 CCA1_CCA1_ArabidopsisPBM 0.931 0.776 8.619 0.753 0.962 0.7687 0.93800 12 10 10 12 0.8333 0.8333 1.0000 D 1 .aAAAkaTCTw. aAAATATCTt 5 1 3 3 6 11 6 5.0000 3
oligos_5-7nt_m2 CCA1_CCA1_ArabidopsisPBM oligos_5-7nt_m2 CCA1_CCA1_ArabidopsisPBM 0.967 0.644 8.266 0.633 0.981 0.3857 0.95608 15 10 10 15 0.6667 0.6667 1.0000 D 4 ....AAAATATCTy. aAAATATCTt 3 11 5 8 3 3 3 5.1429 4
dyads_test_vs_ctrl_m1 CCA1_MA0972.1_JASPAR dyads_test_vs_ctrl_m1 CCA1_MA0972.1_JASPAR 0.945 0.630 8.514 0.606 0.963 0.5912 0.93204 12 8 8 12 0.6667 0.6667 1.0000 D 2 ..AAAkaTCT.. AAATATCT 4 13 4 13 7 7 5 7.5714 5
oligos_5-7nt_m2 CCA1_MA0972.1_JASPAR oligos_5-7nt_m2 CCA1_MA0972.1_JASPAR 0.987 0.527 8.004 0.522 0.988 0.1869 0.96179 15 8 8 15 0.5333 0.5333 1.0000 D 5 .....AAATATCT.. AAATATCT 1 28 6 17 1 1 1 7.8571 6
dyads_test_vs_ctrl_m2 PK22848.1_M0587_1.02_CISBP dyads_test_vs_ctrl_m2 PK22848.1_M0587_1.02_CISBP 0.878 0.753 4.376 0.718 0.956 1.0576 0.93940 13 13 12 14 0.8571 0.9231 0.9231 D -1 wwAATTTmAAAw. .mAAATTTwaawa 17 3 26 4 5 18 9 11.7143 7
dyads_test_vs_ctrl_m3 Medtr8g106590.1_M0145_1.02_CISBP dyads_test_vs_ctrl_m3 Medtr8g106590.1_M0145_1.02_CISBP 0.884 0.643 4.930 0.634 0.946 0.8715 0.91749 11 8 8 11 0.7273 0.7273 1.0000 D 3 ...AAAATAwh AAAWTAAT 14 12 22 7 14 12 14 13.5714 8
dyads_test_vs_ctrl_m1 CCA1_M01819_TRANSFAC dyads_test_vs_ctrl_m1 CCA1_M01819_TRANSFAC 0.888 0.627 9.583 0.609 0.939 1.4540 0.92895 12 17 12 17 0.7059 1.0000 0.7059 D -4 raAAAkaTCTwm ....rAAAAwATCTAa. 11 15 1 12 10 42 16 15.2857 9
oligos_5-7nt_m1 Medtr8g106590.1_M0145_1.02_CISBP oligos_5-7nt_m1 Medtr8g106590.1_M0145_1.02_CISBP 0.872 0.581 4.555 0.571 0.941 0.9372 0.91443 12 8 8 12 0.6667 0.6667 1.0000 D 4 ....AAAATAwh AAAWTAAT 21 19 25 15 20 16 15 18.7143 10
oligos_5-7nt_m2 CCA1_M01819_TRANSFAC oligos_5-7nt_m2 CCA1_M01819_TRANSFAC 0.840 0.741 9.553 0.767 0.930 2.0986 0.93171 15 17 15 17 0.8824 1.0000 0.8824 D -1 wrkgAAAATATCTyb .mharAAAAwATCTAa. 37 4 2 1 8 60 23 19.2857 11
oligos_5-7nt_m2 PK02532.1_M1303_1.02_CISBP oligos_5-7nt_m2 PK02532.1_M1303_1.02_CISBP 0.930 0.558 2.385 0.013 0.958 0.7575 0.93162 15 9 9 15 0.6000 0.6000 1.0000 R 5 .....AAATATCTy. WAATATCTN 7 22 38 54 9 10 8 21.1429 12
dyads_test_vs_ctrl_m1 PK02532.1_M1303_1.02_CISBP dyads_test_vs_ctrl_m1 PK02532.1_M1303_1.02_CISBP 0.893 0.670 3.597 0.081 0.938 1.1149 0.91704 12 9 9 12 0.7500 0.7500 1.0000 R 2 ..AAAkaTCTw. WAATATCTN 10 7 32 49 15 21 17 21.5714 13
oligos_5-7nt_m3 Medtr8g106590.1_M0145_1.02_CISBP oligos_5-7nt_m3 Medtr8g106590.1_M0145_1.02_CISBP 0.888 0.444 3.871 0.439 0.953 0.7572 0.92309 16 8 8 16 0.5000 0.5000 1.0000 D 8 ........AAAATavw AAAWTAAT 12 49 31 34 11 9 12 22.5714 14
dyads_test_vs_ctrl_m1 ARR11_ARR11_3_ArabidopsisPBM dyads_test_vs_ctrl_m1 ARR11_ARR11_3_ArabidopsisPBM 0.811 0.676 3.997 0.627 0.924 1.5261 0.91265 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..AAAkaTCTwm wAAGATCTTk 43 6 29 9 22 46 30 26.4286 15
dyads_test_vs_ctrl_m1 EPR1_M1317_1.02_CISBP dyads_test_vs_ctrl_m1 EPR1_M1317_1.02_CISBP 0.861 0.646 1.882 0.127 0.937 1.1404 0.91610 12 9 9 12 0.7500 0.7500 1.0000 R 1 .aAAAkaTCT.. WAAATATCT 26 10 44 47 16 25 18 26.5714 16
dyads_test_vs_ctrl_m2 SOL1_M0590_1.02_CISBP dyads_test_vs_ctrl_m2 SOL1_M0590_1.02_CISBP 0.852 0.524 4.705 0.421 0.932 1.0846 0.90795 13 8 8 13 0.6154 0.6154 1.0000 R 4 ....TTTmAAAw. WTTYAAAY 32 30 24 37 29 20 22 27.7143 17
oligos_5-7nt_m2 EPR1_M1317_1.02_CISBP oligos_5-7nt_m2 EPR1_M1317_1.02_CISBP 0.877 0.526 1.980 0.102 0.936 1.1530 0.91563 15 9 9 15 0.6000 0.6000 1.0000 R 4 ....AAAATATCT.. WAAATATCT 19 29 41 48 17 26 20 28.5714 18
dyads_test_vs_ctrl_m2 AT3G04850_M0589_1.02_CISBP dyads_test_vs_ctrl_m2 AT3G04850_M0589_1.02_CISBP 0.811 0.624 2.750 0.617 0.921 1.5808 0.91110 13 10 10 13 0.7692 0.7692 1.0000 R 2 ..AATTTmAAAw. AWTTYRAAWT 42 16 34 10 24 47 31 29.1429 19
dyads_test_vs_ctrl_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint dyads_test_vs_ctrl_m2 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint 0.864 0.532 3.884 0.299 0.929 1.1400 0.90563 13 8 8 13 0.6154 0.6154 1.0000 R 4 ....TTTmAAAw. TTTAAAAG 25 26 30 45 34 24 25 29.8571 20
oligos_5-7nt_m1 CCA1_MA0972.1_JASPAR oligos_5-7nt_m1 CCA1_MA0972.1_JASPAR 0.881 0.475 5.835 0.455 0.920 1.1227 0.89297 12 8 7 13 0.5385 0.5833 0.8750 D 5 .....AAATAwh AAATATC. 15 39 18 32 49 22 34 29.8571 21
dyads_test_vs_ctrl_m1 PK08316.1_M1306_1.02_CISBP dyads_test_vs_ctrl_m1 PK08316.1_M1306_1.02_CISBP 0.816 0.680 1.825 0.615 0.920 1.6098 0.91028 12 10 10 12 0.8333 0.8333 1.0000 D 1 .aAAAkaTCTw. wwaawATCtw 41 5 45 11 25 49 35 30.1429 22
oligos_5-7nt_m2 LOC_Os08g06110_M1365_1.02_CISBP oligos_5-7nt_m2 LOC_Os08g06110_M1365_1.02_CISBP 0.879 0.528 0.543 -0.050 0.946 0.9801 0.92222 15 9 9 15 0.6000 0.6000 1.0000 R 5 .....AAATATCTy. AAATATCTW 16 27 63 63 12 17 13 30.1429 23
oligos_5-7nt_m1 RVE1_RVE1_ArabidopsisPBM oligos_5-7nt_m1 RVE1_RVE1_ArabidopsisPBM 0.861 0.492 5.657 0.461 0.921 1.2649 0.90059 12 10 8 14 0.5714 0.6667 0.8000 D 4 ....AAAATAwh wAAATATC.. 28 37 19 27 40 28 33 30.2857 24
dyads_test_vs_ctrl_m2 gw1.20.00.89.1_M0601_1.02_CISBP dyads_test_vs_ctrl_m2 gw1.20.00.89.1_M0601_1.02_CISBP 0.853 0.656 0.840 0.651 0.919 1.6184 0.91004 13 10 10 13 0.7692 0.7692 1.0000 D 3 ...ATTTmAAAww awttyraawt 31 8 58 5 26 50 37 30.7143 25
dyads_test_vs_ctrl_m2 HMGIY_M01800_TRANSFAC dyads_test_vs_ctrl_m2 HMGIY_M01800_TRANSFAC 0.885 0.409 0.761 -0.017 0.960 0.4807 0.91829 13 6 6 13 0.4615 0.4615 1.0000 R 7 .......mAAAww AAAWWW 13 62 60 58 13 4 7 31.0000 26
dyads_test_vs_ctrl_m3 CCA1_MA0972.1_JASPAR dyads_test_vs_ctrl_m3 CCA1_MA0972.1_JASPAR 0.866 0.505 6.307 0.482 0.912 1.2377 0.88762 11 8 7 12 0.5833 0.6364 0.8750 D 4 ....AAATAwh AAATATC. 24 35 14 23 53 27 45 31.5714 27
dyads_test_vs_ctrl_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint dyads_test_vs_ctrl_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint 0.922 0.426 0.253 -0.032 0.955 0.5373 0.91362 11 8 6 13 0.4615 0.5455 0.7500 R 5 .....AATAwh AATAAA.. 8 54 64 61 21 5 10 31.8571 28
oligos_5-7nt_m1 CCA1_CCA1_ArabidopsisPBM oligos_5-7nt_m1 CCA1_CCA1_ArabidopsisPBM 0.858 0.491 6.098 0.458 0.916 1.3371 0.89779 12 10 8 14 0.5714 0.6667 0.8000 D 4 ....AAAATAwh aAAATATC.. 29 38 16 29 43 33 40 32.5714 29
dyads_test_vs_ctrl_m4 CCA1_CCA1_ArabidopsisPBM dyads_test_vs_ctrl_m4 CCA1_CCA1_ArabidopsisPBM 0.871 0.415 5.210 0.409 0.928 1.4440 0.91503 21 10 10 21 0.4762 0.4762 1.0000 D 1 .aAAAkwTCTw.......... aAAATATCTt 22 59 21 40 19 41 27 32.7143 30
dyads_test_vs_ctrl_m3 RVE1_RVE1_ArabidopsisPBM dyads_test_vs_ctrl_m3 RVE1_RVE1_ArabidopsisPBM 0.845 0.520 6.118 0.484 0.912 1.4108 0.89501 11 10 8 13 0.6154 0.7273 0.8000 D 3 ...AAAATAwh wAAATATC.. 35 31 15 21 47 38 44 33.0000 31
dyads_test_vs_ctrl_m2 AT2G20110_M0588_1.02_CISBP dyads_test_vs_ctrl_m2 AT2G20110_M0588_1.02_CISBP 0.830 0.511 6.095 0.489 0.914 1.3805 0.89615 13 8 8 13 0.6154 0.6154 1.0000 R 3 ...ATTTmAAA.. DTTTAAAY 39 34 17 20 45 36 41 33.1429 32
dyads_test_vs_ctrl_m1 HMGIY_M01800_TRANSFAC dyads_test_vs_ctrl_m1 HMGIY_M01800_TRANSFAC 0.869 0.435 0.832 -0.025 0.953 0.5672 0.91125 12 6 6 12 0.5000 0.5000 1.0000 R 1 .aAAAka..... AAAWWW 23 51 59 59 23 6 11 33.1429 33
dyads_test_vs_ctrl_m4 RVE1_RVE1_ArabidopsisPBM dyads_test_vs_ctrl_m4 RVE1_RVE1_ArabidopsisPBM 0.861 0.410 4.832 0.408 0.928 1.4328 0.91536 21 10 10 21 0.4762 0.4762 1.0000 D 1 .aAAAkwTCTw.......... wAAATATCTk 27 61 23 41 18 40 26 33.7143 34
dyads_test_vs_ctrl_m3 CCA1_CCA1_ArabidopsisPBM dyads_test_vs_ctrl_m3 CCA1_CCA1_ArabidopsisPBM 0.843 0.519 6.646 0.482 0.908 1.4756 0.89263 11 10 8 13 0.6154 0.7273 0.8000 D 3 ...AAAATAwh aAAATATC.. 36 32 12 22 50 43 48 34.7143 35
dyads_test_vs_ctrl_m1 ATDOF2.4_M0648_1.02_CISBP dyads_test_vs_ctrl_m1 ATDOF2.4_M0648_1.02_CISBP 0.777 0.453 1.776 0.457 0.936 0.8965 0.90436 12 7 7 12 0.5833 0.5833 1.0000 D 0 raAAAka..... awAAaGt 55 46 48 30 35 13 19 35.1429 36
oligos_5-7nt_m3 AT2G20110_M0588_1.02_CISBP oligos_5-7nt_m3 AT2G20110_M0588_1.02_CISBP 0.848 0.424 6.909 0.416 0.919 1.2993 0.89925 16 8 8 16 0.5000 0.5000 1.0000 R 4 ....TTTTAAAA.... DTTTAAAY 33 55 11 38 42 31 38 35.4286 37
oligos_5-7nt_m1 CCA1_M01819_TRANSFAC oligos_5-7nt_m1 CCA1_M01819_TRANSFAC 0.784 0.553 7.656 0.550 0.902 2.3459 0.90975 12 17 12 17 0.7059 1.0000 0.7059 D -1 wrggAAAATAwh .mharAAAAwATC.... 53 24 9 16 28 64 54 35.4286 38
dyads_test_vs_ctrl_m1 DOF2.4_MA0982.1_JASPAR dyads_test_vs_ctrl_m1 DOF2.4_MA0982.1_JASPAR 0.776 0.453 1.787 0.456 0.936 0.9008 0.90413 12 7 7 12 0.5833 0.5833 1.0000 D 0 raAAAka..... awAAmGt 56 47 47 31 36 14 21 36.0000 39
dyads_test_vs_ctrl_m3 CCA1_M01819_TRANSFAC dyads_test_vs_ctrl_m3 CCA1_M01819_TRANSFAC 0.799 0.517 7.915 0.497 0.904 2.1142 0.90653 11 17 11 17 0.6471 1.0000 0.6471 D -2 wwtAAAATAwh ..harAAAAwATC.... 49 33 8 19 30 62 51 36.0000 40
oligos_5-7nt_m1 HMGIY_M01800_TRANSFAC oligos_5-7nt_m1 HMGIY_M01800_TRANSFAC 0.877 0.438 1.963 0.049 0.924 0.9065 0.88779 12 6 6 12 0.5000 0.5000 1.0000 R 4 ....AAAATA.. AAAWWW 18 50 42 52 52 15 29 36.8571 41
oligos_5-7nt_m4 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint oligos_5-7nt_m4 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qnc_B_3D-footprint 0.873 0.466 0.884 -0.029 0.930 1.1251 0.90624 15 8 8 15 0.5333 0.5333 1.0000 R 6 ......AATAcaAs. AATAAAAG 20 42 57 60 32 23 24 36.8571 42
oligos_5-7nt_m2 PK08316.1_M1306_1.02_CISBP oligos_5-7nt_m2 PK08316.1_M1306_1.02_CISBP 0.826 0.551 1.723 0.511 0.912 1.7593 0.90621 15 10 10 15 0.6667 0.6667 1.0000 D 4 ....AAAATATCTy. wwaawATCtw 40 25 49 18 33 54 43 37.4286 43
dyads_test_vs_ctrl_m1 LOC_Os08g06110_M1365_1.02_CISBP dyads_test_vs_ctrl_m1 LOC_Os08g06110_M1365_1.02_CISBP 0.837 0.628 0.742 -0.042 0.927 1.3179 0.90980 12 9 9 12 0.7500 0.7500 1.0000 R 2 ..AAAkaTCTw. AAATATCTW 38 14 61 62 27 32 28 37.4286 44
oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint oligos_5-7nt_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qna_B_3D-footprint 0.848 0.424 6.533 0.415 0.914 1.3819 0.89609 16 8 8 16 0.5000 0.5000 1.0000 D 3 ...ATTTTAAA..... CTTTTAAA 34 57 13 39 46 37 42 38.2857 45
oligos_5-7nt_m3 gw1.20.00.89.1_M0601_1.02_CISBP oligos_5-7nt_m3 gw1.20.00.89.1_M0601_1.02_CISBP 0.911 0.569 1.115 0.583 0.887 2.2516 0.89390 16 10 10 16 0.6250 0.6250 1.0000 D 3 ...ATTTTAAAAT... awttyraawt 9 21 55 14 48 63 58 38.2857 46
oligos_5-7nt_m4 HMGA_M0118_1.02_CISBP oligos_5-7nt_m4 HMGA_M0118_1.02_CISBP 0.765 0.459 1.802 0.464 0.921 1.4229 0.90628 15 9 9 15 0.6000 0.6000 1.0000 D 0 wakgAAAAT...... ssrrwAAwt 60 43 46 26 31 39 32 39.5714 47
dyads_test_vs_ctrl_m2 AT4G29000_M0591_1.02_CISBP dyads_test_vs_ctrl_m2 AT4G29000_M0591_1.02_CISBP 0.775 0.596 5.414 0.442 0.903 1.9380 0.90156 13 10 10 13 0.7692 0.7692 1.0000 R 3 ...ATTTmAAAww AATTCAAAYT 57 18 20 33 39 58 53 39.7143 48
dyads_test_vs_ctrl_m3 HMGIY_M01800_TRANSFAC dyads_test_vs_ctrl_m3 HMGIY_M01800_TRANSFAC 0.857 0.467 2.252 0.064 0.910 1.0839 0.87730 11 6 6 11 0.5455 0.5455 1.0000 R 3 ...AAAATA.. AAAWWW 30 41 39 51 59 19 46 40.7143 49
oligos_5-7nt_m2 HMGA_M0118_1.02_CISBP oligos_5-7nt_m2 HMGA_M0118_1.02_CISBP 0.762 0.457 1.946 0.468 0.917 1.4918 0.90404 15 9 9 15 0.6000 0.6000 1.0000 D 0 wrkgAAAAT...... ssrrwAAwt 62 44 43 25 37 44 39 42.0000 50
oligos_5-7nt_m3 AT3G04850_M0589_1.02_CISBP oligos_5-7nt_m3 AT3G04850_M0589_1.02_CISBP 0.808 0.505 3.034 0.481 0.895 2.1093 0.89730 16 10 10 16 0.6250 0.6250 1.0000 D 3 ...ATTTTAAAAT... awTTyrAAwt 46 36 33 24 44 61 56 42.8571 51
dyads_test_vs_ctrl_m1 fgenesh1_pg.C_Chr_07.0001000042_M0808_1.02_CISBP dyads_test_vs_ctrl_m1 fgenesh1_pg.C_Chr_07.0001000042_M0808_1.02_CISBP 0.759 0.434 2.082 0.403 0.919 1.2890 0.89965 12 10 8 14 0.5714 0.6667 0.8000 D 4 ....AkaTCTwm rgATCwyw.. 64 52 40 42 41 30 36 43.5714 52
dyads_test_vs_ctrl_m2 fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP dyads_test_vs_ctrl_m2 fgeneshCV_pg.C_scaffold_18000164_M0599_1.02_CISBP 0.809 0.622 0.959 0.283 0.906 1.8834 0.90296 13 10 10 13 0.7692 0.7692 1.0000 R 2 ..AATTTmAAAw. WWWTTYAAAH 45 17 56 46 38 56 49 43.8571 53
dyads_test_vs_ctrl_m3 AHL20_AHL20_ArabidopsisPBM dyads_test_vs_ctrl_m3 AHL20_AHL20_ArabidopsisPBM 0.807 0.404 4.053 0.372 0.908 1.2887 0.88532 11 10 7 14 0.5000 0.6364 0.7000 D 4 ....AAATAwh wAATATA... 47 64 28 44 54 29 47 44.7143 54
oligos_5-7nt_m4 Medtr8g106590.1_M0145_1.02_CISBP oligos_5-7nt_m4 Medtr8g106590.1_M0145_1.02_CISBP 0.795 0.424 4.342 0.423 0.906 1.5075 0.89148 15 8 8 15 0.5333 0.5333 1.0000 D 4 ....AAAATAca... AAAWTAAT 50 56 27 36 51 45 50 45.0000 55
dyads_test_vs_ctrl_m3 AHL12_MA0932.1_JASPAR dyads_test_vs_ctrl_m3 AHL12_MA0932.1_JASPAR 0.762 0.444 2.516 0.431 0.902 1.3750 0.88155 11 8 7 12 0.5833 0.6364 0.8750 D 4 ....AAATAwh AAwwwwT. 63 48 36 35 57 35 55 47.0000 56
oligos_5-7nt_m1 AHL12_MA0932.1_JASPAR oligos_5-7nt_m1 AHL12_MA0932.1_JASPAR 0.762 0.410 2.406 0.397 0.904 1.3458 0.88281 12 8 7 13 0.5385 0.5833 0.8750 D 5 .....AAATAwh AAwwwwT. 61 60 37 43 56 34 52 49.0000 57
dyads_test_vs_ctrl_m3 KAN_M1340_1.02_CISBP dyads_test_vs_ctrl_m3 KAN_M1340_1.02_CISBP 0.767 0.472 1.340 0.461 0.885 1.8334 0.88032 11 10 8 13 0.6154 0.7273 0.8000 D 3 ...AAAATAwh rrwaTAtw.. 58 40 52 28 58 55 60 50.1429 58
dyads_test_vs_ctrl_m1 ARR10_M01050_TRANSFAC dyads_test_vs_ctrl_m1 ARR10_M01050_TRANSFAC 0.782 0.456 2.700 0.070 0.887 1.5883 0.87269 12 7 7 12 0.5833 0.5833 1.0000 R 3 ...AAkaTCT.. MRDATCT 54 45 35 50 62 48 59 50.4286 59
oligos_5-7nt_m5 _LEAFY_2vy1_A_3D-footprint oligos_5-7nt_m5 _LEAFY_2vy1_A_3D-footprint 0.786 0.571 0.559 -0.063 0.893 1.7047 0.88460 10 9 8 11 0.7273 0.8000 0.8889 R -1 awATACCA.. .ANNNACCA 52 20 62 64 55 53 57 51.8571 60
dyads_test_vs_ctrl_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint dyads_test_vs_ctrl_m3 TRANSCRIPTION_INITIATION_FACTOR_TFIID-1_1qn4_B_3D-footprint 0.765 0.556 1.202 0.016 0.875 1.9981 0.87506 11 8 8 11 0.7273 0.7273 1.0000 R 0 wwtAAAAT... TATAAAAT 59 23 53 53 61 59 64 53.1429 61
dyads_test_vs_ctrl_m3 PK02532.1_M1303_1.02_CISBP dyads_test_vs_ctrl_m3 PK02532.1_M1303_1.02_CISBP 0.804 0.433 1.180 -0.003 0.880 1.6781 0.86914 11 9 7 13 0.5385 0.6364 0.7778 R 4 ....AAATAwh WAATATC.. 48 53 54 55 64 52 62 55.4286 62
oligos_5-7nt_m1 PK02532.1_M1303_1.02_CISBP oligos_5-7nt_m1 PK02532.1_M1303_1.02_CISBP 0.810 0.405 1.571 -0.004 0.883 1.6343 0.87086 12 9 7 14 0.5000 0.5833 0.7778 R 5 .....AAATAwh WAATATC.. 44 63 51 57 63 51 61 55.7143 63
oligos_5-7nt_m4 ATGRP2B_M0583_1.02_CISBP oligos_5-7nt_m4 ATGRP2B_M0583_1.02_CISBP 0.789 0.421 1.720 -0.003 0.879 1.9332 0.87711 15 8 8 15 0.5333 0.5333 1.0000 R 6 ......AATAcaAs. AAWAAAAM 51 58 50 56 60 57 63 56.4286 64 
 Host name	baobab.eead.csic.es
 Job started	2016-06-03.161223
 Job done	2016-06-03.161412
 Seconds	80.4
	user	80.4
	system	3.96
	cuser	18.71
;	csystem	4.83