MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab
 Program version       	1.118
 Slow mode 
 Input files
	file2 	$RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf
	file1 	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf
 Output files
	alignments_1ton	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.tab
	match_table_txt	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab
	html_index   	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_index.html
	alignments_1ton_html	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB_alignments_1ton.html
	match_table_html	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.html
	prefix       	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB
 Matrices
	file1	10 matrices	MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf
		file1	1	13	138	cacCTTATCCaby
		file1	2	16	65	sytTGTGGCCACAars
		file1	3	16	63	sbACGTGGCCACawsg
		file1	4	12	197	wrGAAAAGAGra
		file1	5	13	58	rwGAAAATCCAww
		file1	6	12	287	rtGGATAAGrdr
		file1	7	28	175	wwCCAbdwwhvwwywwwawawwwTCCwt
		file1	8	25	286	wtAAAtwwwwrkkwwawAaaTTAww
		file1	9	28	269	wwaTTrdwwwrrdtwaawttwArccAww
		file1	10	29	391	wwAAAtwwwwrkdwwwwawwTwwrataww
	file2	887 matrices	$RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf
		file2		1		16		5		TCATTCCACGTAGATr
		file2		2		6		96		GTnAnA
		file2		3		9		96		TGGTnnnTA
		file2		4		9		96		tGGtnnnnA
		file2		5		18		96		TGCnTGnnnnnnaCGcAA
		file2		6		6		96		TGCnTG
		file2		7		5		96		CGAAG
		file2		8		16		96		CgnTTcnAnnnCGAAG
		file2		9		7		96		GGrmGsy
		file2		10		18		96		GGnCGACCnnnGGrCGgT
		file2		11		9		96		TTGTnTCCC
		...	877 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	logoDP       	Dot product between the logo matrices.
	8	NIcor        	Normalized Pearson correlation between the information content matrices. NIcor = Icor * Wr
	9	NSW          	Normalized Sandelin-Wasserman similarity. NSW = SW/w
	10	SSD          	sum of squared distance.
	11	NsEucl       	relative Euclidian similarity. NsEucl = (max(dEucl) - dEucl)/max(dEucl)
	12	w1           	Width of the first matrix
	13	w2           	Width of the second matrix
	14	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	15	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	16	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	17	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	18	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	19	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	20	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
	21	consensus1   	IUPAC consensus of matrix 1 (dots represent non-aligned columns)
	22	consensus2   	IUPAC consensus of matrix 2 (dots represent non-aligned columns)
	23	rcor         	Matching rank for cor
	24	rNcor        	Matching rank for Ncor
	25	rlogoDP      	Matching rank for logoDP
	26	rNIcor       	Matching rank for NIcor
	27	rNsEucl      	Matching rank for NsEucl
	28	rSSD         	Matching rank for SSD
	29	rNSW         	Matching rank for NSW
	30	rank_mean    	Mean of the matching ranks on all selected metrics
	31	match_rank   	Rank of the match (sorting by rank_mean)
id1 id2 name1 name2 cor Ncor logoDP NIcor NSW SSD NsEucl w1 w2 w W Wr wr1 wr2 strand offset consensus1 consensus2 rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank
dyads_test_vs_ctrl_m1 11599_PK17526.1_M1309_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 11599_PK17526.1_M1309_1.02_CISBP_1.02_ 0.910 0.758 6.166 0.740 0.963 0.7476 0.93886 12 10 10 12 0.8333 0.8333 1.0000 D 0 rtGGATAAGr.. wtGGATAAkr 8 2 13 2 5 9 6 6.4286 1
dyads_test_vs_ctrl_m1 10671_AT5G47390_M1344_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 10671_AT5G47390_M1344_1.02_CISBP_1.02_ 0.935 0.779 4.053 0.769 0.975 0.4949 0.95025 12 10 10 12 0.8333 0.8333 1.0000 D 0 rtGGATAAGr.. ayGGATAAgg 2 1 38 1 2 2 2 6.8571 2
dyads_test_vs_ctrl_m1 11605_PK23829.1_M1311_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 11605_PK23829.1_M1311_1.02_CISBP_1.02_ 0.921 0.614 6.148 0.602 0.959 0.6510 0.92869 12 8 8 12 0.6667 0.6667 1.0000 D 1 .tGGATAAG... yGGATAAb 6 21 14 12 18 5 10 12.2857 3
dyads_test_vs_ctrl_m1 10666_AT5G04760_M1336_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 10666_AT5G04760_M1336_1.02_CISBP_1.02_ 0.875 0.729 5.794 0.715 0.949 1.0238 0.92845 12 10 10 12 0.8333 0.8333 1.0000 D 1 .tGGATAAGrd. ydGATAAGGy 21 5 16 4 19 23 20 15.4286 4
dyads_test_vs_ctrl_m1 10634_AT1G19000_M1318_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 10634_AT1G19000_M1318_1.02_CISBP_1.02_ 0.897 0.621 3.454 0.603 0.958 0.7628 0.93138 12 10 9 13 0.6923 0.7500 0.9000 D -1 rtGGATAAG... .dyrGATaar 12 19 50 11 12 11 12 18.1429 5
oligos_5-7nt_m1 10671_AT5G47390_M1344_1.02_CISBP_1.02_ oligos_5-7nt_m1 10671_AT5G47390_M1344_1.02_CISBP_1.02_ 0.953 0.733 2.915 0.167 0.977 0.4679 0.95163 13 10 10 13 0.7692 0.7692 1.0000 R 2 ..cCTTATCCab. CCTTATCCRT 1 4 57 66 1 1 1 18.7143 6
dyads_test_vs_ctrl_m1 11608_PK29550.1_M1314_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 11608_PK29550.1_M1314_1.02_CISBP_1.02_ 0.887 0.740 2.348 0.721 0.953 0.9474 0.93118 12 10 10 12 0.8333 0.8333 1.0000 D 0 rtGGATAAGr.. wyrGATaagr 17 3 65 3 13 20 16 19.5714 7
oligos_5-7nt_m3 348_M00367_TRANSFAC_2012.1_ oligos_5-7nt_m3 348_M00367_TRANSFAC_2012.1_ 0.908 0.480 4.682 0.464 0.958 0.7502 0.93195 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .msACGTSgC 10 40 31 25 11 10 11 19.7143 8
dyads_test_vs_ctrl_m1 11590_PK00738.1_M1302_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 11590_PK00738.1_M1302_1.02_CISBP_1.02_ 0.896 0.621 3.408 0.599 0.957 0.7789 0.93066 12 10 9 13 0.6923 0.7500 0.9000 D -1 rtGGATAAG... .dyrGATaag 14 20 51 13 15 13 13 19.8571 9
oligos_5-7nt_m3 12076_bZIP68_M0255_1.02_CISBP_1.02_ oligos_5-7nt_m3 12076_bZIP68_M0255_1.02_CISBP_1.02_ 0.906 0.510 2.513 0.497 0.963 0.6732 0.93553 16 9 9 16 0.5625 0.5625 1.0000 D 0 sbACGTGGC....... hsacgTGkm 11 30 62 19 8 7 7 20.5714 10
oligos_5-7nt_m3 1225_M01584_TRANSFAC_2012.1_ oligos_5-7nt_m3 1225_M01584_TRANSFAC_2012.1_ 0.875 0.547 4.835 0.537 0.949 1.0271 0.92834 16 10 10 16 0.6250 0.6250 1.0000 D 0 sbACGTGGCC...... wsACGTGGCg 22 26 27 15 20 24 21 22.1429 11
oligos_5-7nt_m1 10666_AT5G04760_M1336_1.02_CISBP_1.02_ oligos_5-7nt_m1 10666_AT5G04760_M1336_1.02_CISBP_1.02_ 0.929 0.715 2.339 0.071 0.969 0.6265 0.94403 13 10 10 13 0.7692 0.7692 1.0000 R 1 .acCTTATCCa.. RCCTTATCHR 3 7 66 71 4 4 4 22.7143 12
dyads_test_vs_ctrl_m1 10570_0600010132_M1390_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 10570_0600010132_M1390_1.02_CISBP_1.02_ 0.842 0.662 5.020 0.668 0.946 1.1891 0.92990 12 13 11 14 0.7857 0.9167 0.8462 D -2 rtGGATAAGrd. ..scGGATAaybt 43 15 25 6 16 32 23 22.8571 13
oligos_5-7nt_m1 11599_PK17526.1_M1309_1.02_CISBP_1.02_ oligos_5-7nt_m1 11599_PK17526.1_M1309_1.02_CISBP_1.02_ 0.910 0.700 3.388 0.127 0.960 0.7956 0.93693 13 10 10 13 0.7692 0.7692 1.0000 R 2 ..cCTTATCCab. YMTTATCCAW 7 9 52 67 6 14 9 23.4286 14
oligos_5-7nt_m3 347_M00366_TRANSFAC_2012.1_ oligos_5-7nt_m3 347_M00366_TRANSFAC_2012.1_ 0.928 0.492 3.643 0.363 0.963 0.6652 0.93592 16 10 9 17 0.5294 0.5625 0.9000 R -1 sbACGTGGC....... .HCACGTGKC 5 35 46 60 7 6 5 23.4286 15
oligos_5-7nt_m1 11605_PK23829.1_M1311_1.02_CISBP_1.02_ oligos_5-7nt_m1 11605_PK23829.1_M1311_1.02_CISBP_1.02_ 0.929 0.572 3.459 0.107 0.962 0.6090 0.93102 13 8 8 13 0.6154 0.6154 1.0000 R 3 ...CTTATCCa.. VTTATCCR 4 25 49 68 14 3 8 24.4286 16
oligos_5-7nt_m3 8789_MA0128_JASPAR_2014_ oligos_5-7nt_m3 8789_MA0128_JASPAR_2014_ 0.910 0.455 5.091 0.464 0.948 0.8284 0.91955 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ WsACGTGG 9 52 23 26 30 15 22 25.2857 17
oligos_5-7nt_m3 1436_M01838_TRANSFAC_2012.1_ oligos_5-7nt_m3 1436_M01838_TRANSFAC_2012.1_ 0.877 0.494 6.880 0.484 0.929 1.2705 0.91144 16 9 9 16 0.5625 0.5625 1.0000 D 1 .bACGTGGCC...... bACGTGGCM 19 33 6 21 39 35 35 26.8571 18
oligos_5-7nt_m3 11099_GBF1_M0268_1.02_CISBP_1.02_ oligos_5-7nt_m3 11099_GBF1_M0268_1.02_CISBP_1.02_ 0.854 0.534 3.312 0.521 0.946 1.0857 0.92632 16 10 10 16 0.6250 0.6250 1.0000 D 0 sbACGTGGCC...... ysACGTGkmm 35 27 54 16 23 26 25 29.4286 19
dyads_test_vs_ctrl_m1 10669_AT5G08520_M1339_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 10669_AT5G08520_M1339_1.02_CISBP_1.02_ 0.861 0.646 2.469 0.611 0.939 1.0985 0.91765 12 9 9 12 0.7500 0.7500 1.0000 D 1 .tGGATAAGr.. hrGATargr 31 16 63 9 33 27 29 29.7143 20
dyads_test_vs_ctrl_m1 11606_PK27213.1_M1312_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m1 11606_PK27213.1_M1312_1.02_CISBP_1.02_ 0.869 0.602 2.135 0.576 0.941 1.0706 0.91871 12 10 9 13 0.6923 0.7500 0.9000 D -1 rtGGATAAG... .mwrGATaas 24 22 68 14 32 25 27 30.2857 21
oligos_5-7nt_m3 350_M00369_TRANSFAC_2012.1_ oligos_5-7nt_m3 350_M00369_TRANSFAC_2012.1_ 0.870 0.461 4.225 0.436 0.946 0.9740 0.92246 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .ccACGTSrc 23 49 36 34 27 21 24 30.5714 22
oligos_5-7nt_m3 660_M00943_TRANSFAC_2012.1_ oligos_5-7nt_m3 660_M00943_TRANSFAC_2012.1_ 0.868 0.460 3.472 0.439 0.950 0.9030 0.92534 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .ycACGTGgs 26 50 48 33 24 17 19 31.0000 23
oligos_5-7nt_m1 10634_AT1G19000_M1318_1.02_CISBP_1.02_ oligos_5-7nt_m1 10634_AT1G19000_M1318_1.02_CISBP_1.02_ 0.895 0.688 0.350 -0.098 0.955 0.9046 0.93275 13 10 10 13 0.7692 0.7692 1.0000 R 3 ...CTTATCCaby YTTATCYRHW 15 11 76 74 9 18 14 31.0000 24
oligos_5-7nt_m1 11590_PK00738.1_M1302_1.02_CISBP_1.02_ oligos_5-7nt_m1 11590_PK00738.1_M1302_1.02_CISBP_1.02_ 0.897 0.690 0.313 -0.100 0.954 0.9118 0.93248 13 10 10 13 0.7692 0.7692 1.0000 R 3 ...CTTATCCaby CTTATCYRHW 13 10 77 75 10 19 15 31.2857 25
dyads_test_vs_ctrl_m1 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_ dyads_test_vs_ctrl_m1 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_ 0.847 0.635 2.552 0.605 0.934 1.1799 0.91466 12 9 9 12 0.7500 0.7500 1.0000 D 1 .tGGATAAGr.. ygGATarsg 40 18 61 10 35 31 32 32.4286 26
oligos_5-7nt_m4 339_M00355_TRANSFAC_2012.1_ oligos_5-7nt_m4 339_M00355_TRANSFAC_2012.1_ 0.791 0.725 5.268 0.704 0.922 1.7250 0.91557 12 11 11 12 0.9167 0.9167 1.0000 D 0 wrGAAAAGAGr. wwdwAAAGhgm 66 6 21 5 34 60 41 33.2857 27
oligos_5-7nt_m1 11608_PK29550.1_M1314_1.02_CISBP_1.02_ oligos_5-7nt_m1 11608_PK29550.1_M1314_1.02_CISBP_1.02_ 0.892 0.686 1.867 0.208 0.942 1.1668 0.92362 13 10 10 13 0.7692 0.7692 1.0000 R 2 ..cCTTATCCab. YCTTATCYRW 16 12 70 65 25 29 26 34.7143 28
dyads_test_vs_ctrl_m3 10694_ATHB22_M0844_1.02_CISBP_1.02_ dyads_test_vs_ctrl_m3 10694_ATHB22_M0844_1.02_CISBP_1.02_ 0.877 0.405 1.067 0.238 0.970 0.7214 0.94995 25 13 12 26 0.4615 0.4800 0.9231 R 13 .............wwawAaaTTAww AWWWAWATTATW. 20 77 71 64 3 8 3 35.1429 29
oligos_5-7nt_m3 1408_M01806_TRANSFAC_2012.1_ oligos_5-7nt_m3 1408_M01806_TRANSFAC_2012.1_ 0.868 0.434 4.684 0.429 0.937 1.0077 0.91127 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ wsACGTGk 25 60 30 38 41 22 30 35.1429 30
oligos_5-7nt_m3 410_M00441_TRANSFAC_2012.1_ oligos_5-7nt_m3 410_M00441_TRANSFAC_2012.1_ 0.845 0.470 5.381 0.448 0.925 1.5040 0.91328 16 12 10 18 0.5556 0.6250 0.8333 D -2 sbACGTGGCC...... ..cCACGTGgCm 42 46 19 30 37 49 39 37.4286 31
oligos_5-7nt_m3 11100_GBF2_M0266_1.02_CISBP_1.02_ oligos_5-7nt_m3 11100_GBF2_M0266_1.02_CISBP_1.02_ 0.879 0.494 0.248 -0.128 0.952 0.8702 0.92671 16 9 9 16 0.5625 0.5625 1.0000 R 0 sbACGTGGC....... YBACGTGKM 18 32 79 78 22 16 18 37.5714 32
oligos_5-7nt_m3 11984_ZCW32_M0153_1.02_CISBP_1.02_ oligos_5-7nt_m3 11984_ZCW32_M0153_1.02_CISBP_1.02_ 0.862 0.406 2.678 0.399 0.952 0.7674 0.92257 16 9 8 17 0.4706 0.5000 0.8889 D -1 sbACGTGG........ .scACGTGs 30 75 59 46 26 12 17 37.8571 33
oligos_5-7nt_m3 11101_GBF3_M0264_1.02_CISBP_1.02_ oligos_5-7nt_m3 11101_GBF3_M0264_1.02_CISBP_1.02_ 0.823 0.514 2.320 0.500 0.934 1.3173 0.91884 16 10 10 16 0.6250 0.6250 1.0000 D 0 sbACGTGGCC...... ybAcgTGkmm 48 29 67 18 31 40 33 38.0000 34
oligos_5-7nt_m3 9053_MA0570_JASPAR_2014_ oligos_5-7nt_m3 9053_MA0570_JASPAR_2014_ 0.758 0.638 6.759 0.647 0.915 2.7320 0.92695 16 19 16 19 0.8421 1.0000 0.8421 D -2 sbACGTGGCCACawsg ..mCACGTGGCmcrvvvg. 81 17 7 7 21 81 53 38.1429 35
oligos_5-7nt_m3 411_M00442_TRANSFAC_2012.1_ oligos_5-7nt_m3 411_M00442_TRANSFAC_2012.1_ 0.798 0.518 6.497 0.511 0.917 2.1649 0.91997 16 17 13 20 0.6500 0.8125 0.7647 D -4 sbACGTGGCCACa... ....mCACGTGGCmcga 64 28 8 17 28 77 50 38.8571 36
oligos_5-7nt_m3 9044_MA0561_JASPAR_2014_ oligos_5-7nt_m3 9044_MA0561_JASPAR_2014_ 0.863 0.432 4.889 0.402 0.926 1.1761 0.90414 16 8 8 16 0.5000 0.5000 1.0000 D 1 .bACGTGGC....... CACGTGsc 29 61 26 44 53 30 37 40.0000 37
oligos_5-7nt_m4 7217_DOF5.7_ArabidopsisPBM_20140210_ oligos_5-7nt_m4 7217_DOF5.7_ArabidopsisPBM_20140210_ 0.798 0.665 2.996 0.645 0.917 1.6516 0.90913 12 10 10 12 0.8333 0.8333 1.0000 D 2 ..GAAAAGAGra raWAArrkgr 65 14 56 8 43 56 48 41.4286 38
oligos_5-7nt_m1 11606_PK27213.1_M1312_1.02_CISBP_1.02_ oligos_5-7nt_m1 11606_PK27213.1_M1312_1.02_CISBP_1.02_ 0.866 0.666 0.251 -0.123 0.936 1.2837 0.91988 13 10 10 13 0.7692 0.7692 1.0000 R 3 ...CTTATCCaby STTATCYWKW 27 13 78 77 29 37 31 41.7143 39
oligos_5-7nt_m1 10570_0600010132_M1390_1.02_CISBP_1.02_ oligos_5-7nt_m1 10570_0600010132_M1390_1.02_CISBP_1.02_ 0.830 0.711 0.242 -0.108 0.940 1.4380 0.92934 13 13 12 14 0.8571 0.9231 0.9231 R 1 .acCTTATCCaby AVRTTATCCGSA. 46 8 80 76 17 45 28 42.8571 40
oligos_5-7nt_m3 349_M00368_TRANSFAC_2012.1_ oligos_5-7nt_m3 349_M00368_TRANSFAC_2012.1_ 0.846 0.448 5.364 0.424 0.918 1.4810 0.90439 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .mCACGTGkm 41 54 20 41 52 48 46 43.1429 41
oligos_5-7nt_m3 342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028_ oligos_5-7nt_m3 342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028_ 0.854 0.474 7.587 0.464 0.900 2.0027 0.89993 16 12 10 18 0.5556 0.6250 0.8333 D -2 sbACGTGGCC...... ..TGACGTGGCC 34 43 2 27 60 73 72 44.4286 42
oligos_5-7nt_m3 11535_O22677_ANTMA_M2681_1.02_CISBP_1.02_ oligos_5-7nt_m3 11535_O22677_ANTMA_M2681_1.02_CISBP_1.02_ 0.854 0.474 7.576 0.464 0.900 2.0017 0.89996 16 12 10 18 0.5556 0.6250 0.8333 D -2 sbACGTGGCC...... ..TGACGTGGCC 36 44 3 28 59 72 71 44.7143 43
oligos_5-7nt_m3 4993_ABF1_Athamap_20091028_ oligos_5-7nt_m3 4993_ABF1_Athamap_20091028_ 0.855 0.481 6.470 0.465 0.900 1.8065 0.89440 16 9 9 16 0.5625 0.5625 1.0000 D 0 sbACGTGGC....... ACACGTGGC 33 39 9 24 71 67 73 45.1429 44
oligos_5-7nt_m3 7247_PIF3_ArabidopsisPBM_20140210_ oligos_5-7nt_m3 7247_PIF3_ArabidopsisPBM_20140210_ 0.851 0.451 5.538 0.424 0.911 1.6007 0.90060 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .CCACGTGGs 38 53 17 40 57 54 60 45.5714 45
oligos_5-7nt_m3 353_M00372_TRANSFAC_2012.1_ oligos_5-7nt_m3 353_M00372_TRANSFAC_2012.1_ 0.827 0.438 3.720 0.357 0.929 1.2724 0.91137 16 10 9 17 0.5294 0.5625 0.9000 R -1 sbACGTGGC....... .YBACGTGRA 47 59 45 62 40 36 36 46.4286 46
oligos_5-7nt_m3 409_M00440_TRANSFAC_2012.1_ oligos_5-7nt_m3 409_M00440_TRANSFAC_2012.1_ 0.811 0.477 6.256 0.451 0.900 1.9905 0.90024 16 11 10 17 0.5882 0.6250 0.9091 D -1 sbACGTGGCC...... .hCACGTGvCm 53 41 11 29 58 71 69 47.4286 47
oligos_5-7nt_m3 11890_UNE10_M0158_1.02_CISBP_1.02_ oligos_5-7nt_m3 11890_UNE10_M0158_1.02_CISBP_1.02_ 0.853 0.426 4.775 0.374 0.918 1.3089 0.89888 16 8 8 16 0.5000 0.5000 1.0000 R 0 sbACGTGG........ KCACGTGG 37 63 29 57 63 39 44 47.4286 48
oligos_5-7nt_m4 11836_TMO6_M0654_1.02_CISBP_1.02_ oligos_5-7nt_m4 11836_TMO6_M0654_1.02_CISBP_1.02_ 0.815 0.476 1.920 0.469 0.918 1.1537 0.89150 12 7 7 12 0.5833 0.5833 1.0000 D 1 .rGAAAAG.... vawAAmG 51 42 69 23 74 28 47 47.7143 49
oligos_5-7nt_m3 372_M00400_TRANSFAC_2012.1_ oligos_5-7nt_m3 372_M00400_TRANSFAC_2012.1_ 0.766 0.490 7.955 0.471 0.880 3.8479 0.91331 16 25 16 25 0.6400 1.0000 0.6400 D -9 sbACGTGGCCACawsg .........CCACGTGGCCvCGACA 77 36 1 22 36 82 80 47.7143 50
dyads_test_vs_ctrl_m1 725_M01015_TRANSFAC_2012.1_ dyads_test_vs_ctrl_m1 725_M01015_TRANSFAC_2012.1_ 0.848 0.457 3.071 0.443 0.915 1.1919 0.88972 12 8 7 13 0.5385 0.5833 0.8750 D 5 .....TAAGrdr TAAGAAr. 39 51 55 31 75 33 52 48.0000 51
oligos_5-7nt_m1 10669_AT5G08520_M1339_1.02_CISBP_1.02_ oligos_5-7nt_m1 10669_AT5G08520_M1339_1.02_CISBP_1.02_ 0.863 0.598 0.204 -0.159 0.925 1.3459 0.90885 13 9 9 13 0.6923 0.6923 1.0000 R 2 ..cCTTATCCa.. YCYTATCYD 28 23 81 81 45 41 38 48.1429 52
oligos_5-7nt_m3 351_M00370_TRANSFAC_2012.1_ oligos_5-7nt_m3 351_M00370_TRANSFAC_2012.1_ 0.803 0.425 4.017 0.400 0.920 1.4428 0.90563 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .hsACGTsdm 58 64 39 45 50 46 42 49.1429 53
oligos_5-7nt_m1 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_ oligos_5-7nt_m1 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_ 0.859 0.595 0.183 -0.147 0.924 1.3725 0.90796 13 9 9 13 0.6923 0.6923 1.0000 R 2 ..cCTTATCCa.. CSYTATCCR 32 24 82 80 46 42 40 49.4286 54
oligos_5-7nt_m3 11736_SPT_M0162_1.02_CISBP_1.02_ oligos_5-7nt_m3 11736_SPT_M0162_1.02_CISBP_1.02_ 0.822 0.462 0.610 -0.034 0.930 1.2610 0.91177 16 9 9 16 0.5625 0.5625 1.0000 R 0 sbACGTGGC....... GCACGTGSG 49 47 73 72 38 34 34 49.5714 55
oligos_5-7nt_m3 10569_0300010311_M0363_1.02_CISBP_1.02_ oligos_5-7nt_m3 10569_0300010311_M0363_1.02_CISBP_1.02_ 0.785 0.462 4.547 0.440 0.912 1.7555 0.90631 16 11 10 17 0.5882 0.6250 0.9091 D -1 sbACGTGGCC...... .tsACGTGgca 69 48 33 32 48 64 57 50.1429 56
oligos_5-7nt_m3 1418_M01818_TRANSFAC_2012.1_ oligos_5-7nt_m3 1418_M01818_TRANSFAC_2012.1_ 0.783 0.489 6.293 0.497 0.897 2.0659 0.89837 16 10 10 16 0.6250 0.6250 1.0000 D 1 .bACGTGGCCA..... sACGTGGhvb 72 38 10 20 64 75 76 50.7143 57
oligos_5-7nt_m3 1226_M01585_TRANSFAC_2012.1_ oligos_5-7nt_m3 1226_M01585_TRANSFAC_2012.1_ 0.801 0.424 3.927 0.398 0.918 1.4756 0.90456 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .rCACGTGrs 60 65 42 47 51 47 45 51.0000 58
oligos_5-7nt_m3 761_M01065_TRANSFAC_2012.1_ oligos_5-7nt_m3 761_M01065_TRANSFAC_2012.1_ 0.771 0.446 5.039 0.428 0.910 1.9694 0.90979 16 14 11 19 0.5789 0.6875 0.7857 D -3 sbACGTGGCCA..... ...tkACGTGKsvg 75 56 24 39 42 70 61 52.4286 59
oligos_5-7nt_m3 12238_gw1.270.82.1_M0252_1.02_CISBP_1.02_ oligos_5-7nt_m3 12238_gw1.270.82.1_M0252_1.02_CISBP_1.02_ 0.837 0.419 4.641 0.369 0.912 1.4037 0.89528 16 8 8 16 0.5000 0.5000 1.0000 R 0 sbACGTGG........ GCACGTGG 44 67 32 58 70 44 56 53.0000 60
oligos_5-7nt_m3 12075_bHLH34_M0157_1.02_CISBP_1.02_ oligos_5-7nt_m3 12075_bHLH34_M0157_1.02_CISBP_1.02_ 0.818 0.409 4.115 0.390 0.914 1.3767 0.89629 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ gCACGTGk 50 73 37 49 67 43 54 53.2857 61
oligos_5-7nt_m3 659_M00942_TRANSFAC_2012.1_ oligos_5-7nt_m3 659_M00942_TRANSFAC_2012.1_ 0.814 0.431 5.414 0.402 0.902 1.7724 0.89540 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .mCACGTGkm 52 62 18 43 69 65 67 53.7143 62
oligos_5-7nt_m3 352_M00371_TRANSFAC_2012.1_ oligos_5-7nt_m3 352_M00371_TRANSFAC_2012.1_ 0.790 0.418 3.876 0.389 0.916 1.5108 0.90343 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .hsACGTsds 67 68 43 50 54 50 51 54.7143 63
oligos_5-7nt_m3 11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02_ oligos_5-7nt_m3 11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02_ 0.830 0.415 5.100 0.396 0.900 1.5963 0.88832 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ mCACGTGk 45 70 22 48 80 53 70 55.4286 64
oligos_5-7nt_m3 9051_MA0568_JASPAR_2014_ oligos_5-7nt_m3 9051_MA0568_JASPAR_2014_ 0.804 0.402 3.364 0.381 0.918 1.3078 0.89892 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ vCACGTGb 57 82 53 53 62 38 43 55.4286 65
oligos_5-7nt_m3 340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028_ oligos_5-7nt_m3 340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028_ 0.802 0.445 7.187 0.430 0.876 2.4786 0.88868 16 12 10 18 0.5556 0.6250 0.8333 D -2 sbACGTGGCC...... ..TGACGTGGCm 59 57 4 36 77 79 81 56.1429 66
oligos_5-7nt_m3 8766_MA0097_JASPAR_2014_ oligos_5-7nt_m3 8766_MA0097_JASPAR_2014_ 0.806 0.448 6.218 0.423 0.888 2.2469 0.89401 16 12 10 18 0.5556 0.6250 0.8333 D -2 sbACGTGGCC...... ..TGACGTGkmC 56 55 12 42 72 78 78 56.1429 67
oligos_5-7nt_m3 11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02_ oligos_5-7nt_m3 11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02_ 0.800 0.471 0.741 -0.067 0.917 1.6554 0.90902 16 11 10 17 0.5882 0.6250 0.9091 R -1 sbACGTGGCC...... .WCACGTGGMA 61 45 72 73 44 58 49 57.4286 68
oligos_5-7nt_m3 11534_O22676_ANTMA_M2679_1.02_CISBP_1.02_ oligos_5-7nt_m3 11534_O22676_ANTMA_M2679_1.02_CISBP_1.02_ 0.800 0.445 7.169 0.430 0.876 2.4873 0.88848 16 12 10 18 0.5556 0.6250 0.8333 D -2 sbACGTGGCC...... ..TGACGTGGCm 62 58 5 37 79 80 82 57.5714 69
oligos_5-7nt_m3 10590_ABI5_M0261_1.02_CISBP_1.02_ oligos_5-7nt_m3 10590_ABI5_M0261_1.02_CISBP_1.02_ 0.789 0.493 2.588 0.105 0.911 1.7738 0.90582 16 10 10 16 0.6250 0.6250 1.0000 R 0 sbACGTGGCC...... MCACGTGKCV 68 34 60 69 49 66 59 57.8571 70
oligos_5-7nt_m3 356_M00375_TRANSFAC_2012.1_ oligos_5-7nt_m3 356_M00375_TRANSFAC_2012.1_ 0.785 0.415 3.958 0.365 0.912 1.5912 0.90089 16 10 9 17 0.5294 0.5625 0.9000 R -1 sbACGTGGC....... .YSACGTSDS 70 69 41 59 56 52 58 57.8571 71
oligos_5-7nt_m3 9045_MA0562_JASPAR_2014_ oligos_5-7nt_m3 9045_MA0562_JASPAR_2014_ 0.811 0.405 4.529 0.385 0.901 1.5793 0.88892 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ YCACRTGs 54 76 34 52 76 51 68 58.7143 72
oligos_5-7nt_m3 10574_1500010105_M0364_1.02_CISBP_1.02_ oligos_5-7nt_m3 10574_1500010105_M0364_1.02_CISBP_1.02_ 0.799 0.499 0.463 -0.183 0.913 1.7317 0.90695 16 10 10 16 0.6250 0.6250 1.0000 R 1 .bACGTGGCCA..... CACGTGGCRW 63 31 75 82 47 61 55 59.1429 73
oligos_5-7nt_m3 9043_MA0560_JASPAR_2014_ oligos_5-7nt_m3 9043_MA0560_JASPAR_2014_ 0.784 0.490 2.910 0.076 0.905 1.9036 0.90244 16 10 10 16 0.6250 0.6250 1.0000 R 0 sbACGTGGCC...... YCACGTGGCH 71 37 58 70 55 69 64 60.5714 74
oligos_5-7nt_m3 10633_AT1G01260_M0150_1.02_CISBP_1.02_ oligos_5-7nt_m3 10633_AT1G01260_M0150_1.02_CISBP_1.02_ 0.809 0.404 4.820 0.380 0.898 1.6280 0.88722 16 8 8 16 0.5000 0.5000 1.0000 D 0 sbACGTGG........ sCACGTGk 55 78 28 55 81 55 74 60.8571 75
oligos_5-7nt_m3 662_M00945_TRANSFAC_2012.1_ oligos_5-7nt_m3 662_M00945_TRANSFAC_2012.1_ 0.770 0.407 3.865 0.381 0.908 1.6530 0.89899 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .hsACGTsdb 76 74 44 54 61 57 62 61.1429 76
oligos_5-7nt_m3 604_M00788_TRANSFAC_2012.1_ oligos_5-7nt_m3 604_M00788_TRANSFAC_2012.1_ 0.779 0.412 6.115 0.432 0.882 2.1214 0.88557 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .wcACGTGGW 74 72 15 35 82 76 79 61.8571 77
oligos_5-7nt_m3 11589_PIL5_M0156_1.02_CISBP_1.02_ oligos_5-7nt_m3 11589_PIL5_M0156_1.02_CISBP_1.02_ 0.763 0.404 3.626 0.375 0.904 1.7366 0.89647 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .bCACGTGvy 78 79 47 56 66 62 65 64.7143 78
oligos_5-7nt_m3 5039_TGA1a_Athamap_20091028_ oligos_5-7nt_m3 5039_TGA1a_Athamap_20091028_ 0.762 0.403 3.960 0.359 0.903 1.7535 0.89596 16 10 9 17 0.5294 0.5625 0.9000 R -1 sbACGTGGC....... .WSACGTSDS 79 80 40 61 68 63 66 65.2857 79
oligos_5-7nt_m3 7290_bZIP60_2_ArabidopsisPBM_20140210_ oligos_5-7nt_m3 7290_bZIP60_2_ArabidopsisPBM_20140210_ 0.780 0.413 2.388 0.241 0.905 1.7011 0.89753 16 10 9 17 0.5294 0.5625 0.9000 R -1 sbACGTGGC....... .TGACGTGGC 73 71 64 63 65 59 63 65.4286 80
oligos_5-7nt_m3 663_M00946_TRANSFAC_2012.1_ oligos_5-7nt_m3 663_M00946_TRANSFAC_2012.1_ 0.761 0.403 4.345 0.387 0.898 1.8378 0.89349 16 10 9 17 0.5294 0.5625 0.9000 D -1 sbACGTGGC....... .hsACGTsdY 80 81 35 51 73 68 75 66.1429 81
oligos_5-7nt_m3 4997_ABI5_Athamap_20091028_ oligos_5-7nt_m3 4997_ABI5_Athamap_20091028_ 0.754 0.424 0.479 -0.128 0.888 2.0144 0.88849 16 9 9 16 0.5625 0.5625 1.0000 R 0 sbACGTGGC....... YVACGTRKM 82 66 74 79 78 74 77 75.7143 82 
 Host name	baobab.eead.csic.es
 Job started	2015-11-24.141909
 Job done	2015-11-24.142100
 Seconds	76.82
	user	76.82
	system	6.04
	cuser	22.43
;	csystem	5.85