One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_motifs/peaks_motifs_discovered.tf -format2 transfac -file2 $RSAT/_footprintDB/footprintDB.transfac.plants.motif.tf -mode matches -DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.75 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,logoDP,NIcor,NsEucl,SSD,NSW,match_rank,width,strand,offset,consensus,alignments_1ton -sort Ncor -o MYB59/regulonMYB59.rm.fna.peaks-rm/results/discovered_vs_db/peaks_motifs_vs_db_footDB.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift2 ; 13 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
dyads_test_vs_ctrl_m1_shift2 (dyads_test_vs_ctrl_m1)
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=12; shift=2; ncol=14; --rtGGATAAGrdr ; Alignment reference a 0 0 81 70 12 4 268 13 238 246 11 133 73 75 c 0 0 58 66 12 2 5 10 13 7 10 32 49 50 g 0 0 89 63 254 273 8 19 21 15 259 75 73 100 t 0 0 59 88 9 8 6 245 15 19 7 47 92 62

11599_PK17526.1_M1309_1.02_CISBP_1.02__shift2 (11599_PK17526.1_M1309_1.02_CISBP_1.02_) 0.910 0.758 6.166 0.740 0.939 0.748 0.963 8 2 13 2 5 9 6 6.429 1
; dyads_test_vs_ctrl_m1 versus 11599_PK17526.1_M1309_1.02_CISBP_1.02_; m=1/12; ncol2=10; w=10; offset=0; strand=D; shift=2; score= 6.4286; --wtGGATAAkr-- ; cor=0.910; Ncor=0.758; logoDP=6.166; NIcor=0.740; NsEucl=0.939; SSD=0.748; NSW=0.963; rcor=8; rNcor=2; rlogoDP=13; rNIcor=2; rNsEucl=5; rSSD=9; rNSW=6; rank_mean=6.429; match_rank=1 a 0 0 29 13 0 0 100 0 100 72 16 32 0 0 c 0 0 20 12 0 0 0 0 0 0 24 22 0 0 g 0 0 20 12 100 100 0 0 0 9 35 34 0 0 t 0 0 31 63 0 0 0 100 0 19 25 12 0 0

10671_AT5G47390_M1344_1.02_CISBP_1.02__shift2 (10671_AT5G47390_M1344_1.02_CISBP_1.02_) 0.935 0.779 4.053 0.769 0.950 0.495 0.975 2 1 38 1 2 2 2 6.857 2
; dyads_test_vs_ctrl_m1 versus 10671_AT5G47390_M1344_1.02_CISBP_1.02_; m=2/12; ncol2=10; w=10; offset=0; strand=D; shift=2; score= 6.8571; --ayGGATAAgg-- ; cor=0.935; Ncor=0.779; logoDP=4.053; NIcor=0.769; NsEucl=0.950; SSD=0.495; NSW=0.975; rcor=2; rNcor=1; rlogoDP=38; rNIcor=1; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=6.857; match_rank=2 a 0 0 37 23 19 1 92 1 78 74 14 22 0 0 c 0 0 19 30 4 2 0 0 6 1 22 15 0 0 g 0 0 23 5 72 94 3 0 6 17 50 47 0 0 t 0 0 21 42 5 3 5 99 10 8 14 16 0 0

11605_PK23829.1_M1311_1.02_CISBP_1.02__shift3 (11605_PK23829.1_M1311_1.02_CISBP_1.02_) 0.921 0.614 6.148 0.602 0.929 0.651 0.959 6 21 14 12 18 5 10 12.286 3
; dyads_test_vs_ctrl_m1 versus 11605_PK23829.1_M1311_1.02_CISBP_1.02_; m=3/12; ncol2=8; w=8; offset=1; strand=D; shift=3; score=12.2857; ---yGGATAAb--- ; cor=0.921; Ncor=0.614; logoDP=6.148; NIcor=0.602; NsEucl=0.929; SSD=0.651; NSW=0.959; rcor=6; rNcor=21; rlogoDP=14; rNIcor=12; rNsEucl=18; rSSD=5; rNSW=10; rank_mean=12.286; match_rank=3 a 0 0 0 19 3 0 100 0 100 78 4 0 0 0 c 0 0 0 33 0 0 0 0 0 0 35 0 0 0 g 0 0 0 0 97 100 0 0 0 9 35 0 0 0 t 0 0 0 48 0 0 0 100 0 13 26 0 0 0

10666_AT5G04760_M1336_1.02_CISBP_1.02__shift3 (10666_AT5G04760_M1336_1.02_CISBP_1.02_) 0.875 0.729 5.794 0.715 0.928 1.024 0.949 21 5 16 4 19 23 20 15.429 4
; dyads_test_vs_ctrl_m1 versus 10666_AT5G04760_M1336_1.02_CISBP_1.02_; m=4/12; ncol2=10; w=10; offset=1; strand=D; shift=3; score=15.4286; ---ydGATAAGGy- ; cor=0.875; Ncor=0.729; logoDP=5.794; NIcor=0.715; NsEucl=0.928; SSD=1.024; NSW=0.949; rcor=21; rNcor=5; rlogoDP=16; rNIcor=4; rNsEucl=19; rSSD=23; rNSW=20; rank_mean=15.429; match_rank=4 a 0 0 0 15 36 0 100 0 91 100 10 10 17 0 c 0 0 0 35 8 0 0 0 9 0 9 10 28 0 g 0 0 0 16 30 100 0 0 0 0 71 71 18 0 t 0 0 0 34 26 0 0 100 0 0 10 9 37 0

10634_AT1G19000_M1318_1.02_CISBP_1.02__shift1 (10634_AT1G19000_M1318_1.02_CISBP_1.02_) 0.897 0.621 3.454 0.603 0.931 0.763 0.958 12 19 50 11 12 11 12 18.143 5
; dyads_test_vs_ctrl_m1 versus 10634_AT1G19000_M1318_1.02_CISBP_1.02_; m=5/12; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=18.1429; -wdyrGATaar--- ; cor=0.897; Ncor=0.621; logoDP=3.454; NIcor=0.603; NsEucl=0.931; SSD=0.763; NSW=0.958; rcor=12; rNcor=19; rlogoDP=50; rNIcor=11; rNsEucl=12; rSSD=11; rNSW=12; rank_mean=18.143; match_rank=5 a 0 35 30 16 25 3 92 2 65 59 26 0 0 0 c 0 14 16 32 9 1 3 1 10 4 22 0 0 0 g 0 14 25 9 61 95 4 0 11 22 35 0 0 0 t 0 37 29 43 5 1 1 97 14 15 17 0 0 0

11608_PK29550.1_M1314_1.02_CISBP_1.02__shift2 (11608_PK29550.1_M1314_1.02_CISBP_1.02_) 0.887 0.740 2.348 0.721 0.931 0.947 0.953 17 3 65 3 13 20 16 19.571 7
; dyads_test_vs_ctrl_m1 versus 11608_PK29550.1_M1314_1.02_CISBP_1.02_; m=6/12; ncol2=10; w=10; offset=0; strand=D; shift=2; score=19.5714; --wyrGATaagr-- ; cor=0.887; Ncor=0.740; logoDP=2.348; NIcor=0.721; NsEucl=0.931; SSD=0.947; NSW=0.953; rcor=17; rNcor=3; rlogoDP=65; rNIcor=3; rNsEucl=13; rSSD=20; rNSW=16; rank_mean=19.571; match_rank=7 a 0 0 27 24 30 7 84 5 57 54 21 25 0 0 c 0 0 22 28 9 3 5 3 13 5 24 20 0 0 g 0 0 24 14 54 86 7 3 12 24 35 36 0 0 t 0 0 27 34 7 4 4 89 18 17 20 19 0 0

11590_PK00738.1_M1302_1.02_CISBP_1.02__shift1 (11590_PK00738.1_M1302_1.02_CISBP_1.02_) 0.896 0.621 3.408 0.599 0.931 0.779 0.957 14 20 51 13 15 13 13 19.857 9
; dyads_test_vs_ctrl_m1 versus 11590_PK00738.1_M1302_1.02_CISBP_1.02_; m=7/12; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=19.8571; -wdyrGATaag--- ; cor=0.896; Ncor=0.621; logoDP=3.408; NIcor=0.599; NsEucl=0.931; SSD=0.779; NSW=0.957; rcor=14; rNcor=20; rlogoDP=51; rNIcor=13; rNsEucl=15; rSSD=13; rNSW=13; rank_mean=19.857; match_rank=9 a 0 34 28 22 28 1 91 1 62 57 22 0 0 0 c 0 17 20 28 9 2 2 2 11 5 22 0 0 0 g 0 17 25 11 58 96 6 0 11 23 36 0 0 0 t 0 32 27 39 5 1 1 97 16 15 20 0 0 0

10570_0600010132_M1390_1.02_CISBP_1.02__shift0 (10570_0600010132_M1390_1.02_CISBP_1.02_) 0.842 0.662 5.020 0.668 0.930 1.189 0.946 43 15 25 6 16 32 23 22.857 13
; dyads_test_vs_ctrl_m1 versus 10570_0600010132_M1390_1.02_CISBP_1.02_; m=8/12; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=22.8571; atscGGATAaybt- ; cor=0.842; Ncor=0.662; logoDP=5.020; NIcor=0.668; NsEucl=0.930; SSD=1.189; NSW=0.946; rcor=43; rNcor=15; rlogoDP=25; rNIcor=6; rNsEucl=16; rSSD=32; rNSW=23; rank_mean=22.857; match_rank=13 a 33 20 17 19 12 0 100 0 81 66 8 15 23 0 c 23 20 39 50 2 0 0 0 13 5 39 25 23 0 g 22 19 27 10 84 100 0 0 3 15 17 27 22 0 t 22 41 17 21 2 0 0 100 3 14 36 33 32 0

10669_AT5G08520_M1339_1.02_CISBP_1.02__shift3 (10669_AT5G08520_M1339_1.02_CISBP_1.02_) 0.861 0.646 2.469 0.611 0.918 1.099 0.939 31 16 63 9 33 27 29 29.714 20
; dyads_test_vs_ctrl_m1 versus 10669_AT5G08520_M1339_1.02_CISBP_1.02_; m=9/12; ncol2=9; w=9; offset=1; strand=D; shift=3; score=29.7143; ---hrGATargr-- ; cor=0.861; Ncor=0.646; logoDP=2.469; NIcor=0.611; NsEucl=0.918; SSD=1.099; NSW=0.939; rcor=31; rNcor=16; rlogoDP=63; rNIcor=9; rNsEucl=33; rSSD=27; rNSW=29; rank_mean=29.714; match_rank=20 a 0 0 0 25 28 4 78 1 54 50 21 25 0 0 c 0 0 0 25 15 3 8 1 13 8 24 21 0 0 g 0 0 0 21 42 89 12 0 15 25 37 34 0 0 t 0 0 0 29 15 4 2 98 18 17 18 20 0 0

11606_PK27213.1_M1312_1.02_CISBP_1.02__shift1 (11606_PK27213.1_M1312_1.02_CISBP_1.02_) 0.869 0.602 2.135 0.576 0.919 1.071 0.941 24 22 68 14 32 25 27 30.286 21
; dyads_test_vs_ctrl_m1 versus 11606_PK27213.1_M1312_1.02_CISBP_1.02_; m=10/12; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=30.2857; -wmwrGATaas--- ; cor=0.869; Ncor=0.602; logoDP=2.135; NIcor=0.576; NsEucl=0.919; SSD=1.071; NSW=0.941; rcor=24; rNcor=22; rlogoDP=68; rNIcor=14; rNsEucl=32; rSSD=25; rNSW=27; rank_mean=30.286; match_rank=21 a 0 28 28 28 30 5 80 5 57 52 20 0 0 0 c 0 18 25 24 17 4 6 4 12 8 25 0 0 0 g 0 19 23 21 38 85 9 0 13 23 35 0 0 0 t 0 35 24 27 15 6 5 91 18 17 20 0 0 0

12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__shift3 (12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_) 0.847 0.635 2.552 0.605 0.915 1.180 0.934 40 18 61 10 35 31 32 32.429 26
; dyads_test_vs_ctrl_m1 versus 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_; m=11/12; ncol2=9; w=9; offset=1; strand=D; shift=3; score=32.4286; ---ygGATarsg-- ; cor=0.847; Ncor=0.635; logoDP=2.552; NIcor=0.605; NsEucl=0.915; SSD=1.180; NSW=0.934; rcor=40; rNcor=18; rlogoDP=61; rNIcor=10; rNsEucl=35; rSSD=31; rNSW=32; rank_mean=32.429; match_rank=26 a 0 0 0 20 22 1 76 0 43 43 19 21 0 0 c 0 0 0 30 14 2 7 4 15 9 25 20 0 0 g 0 0 0 21 55 94 17 3 23 30 37 42 0 0 t 0 0 0 29 9 3 0 93 19 18 19 17 0 0

725_M01015_TRANSFAC_2012.1__shift7 (725_M01015_TRANSFAC_2012.1_) 0.848 0.457 3.071 0.443 0.890 1.192 0.915 39 51 55 31 75 33 52 48.000 51
; dyads_test_vs_ctrl_m1 versus 725_M01015_TRANSFAC_2012.1_; m=12/12; ncol2=8; w=7; offset=5; strand=D; shift=7; score= 48; -------TAAGAAr ; cor=0.848; Ncor=0.457; logoDP=3.071; NIcor=0.443; NsEucl=0.890; SSD=1.192; NSW=0.915; rcor=39; rNcor=51; rlogoDP=55; rNIcor=31; rNsEucl=75; rSSD=33; rNSW=52; rank_mean=48.000; match_rank=51 a 0 0 0 0 0 0 0 0 36 36 0 35 37 10 c 0 0 0 0 0 0 0 2 0 0 0 3 0 1 g 0 0 0 0 0 0 0 3 0 1 36 0 1 25 t 0 0 0 0 0 0 0 33 2 1 2 0 0 2

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
dyads_test_vs_ctrl_m1_shift2 (dyads_test_vs_ctrl_m1)																	; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=12; shift=2; ncol=14; --rtGGATAAGrdr ; Alignment reference a 0 0 81 70 12 4 268 13 238 246 11 133 73 75 c 0 0 58 66 12 2 5 10 13 7 10 32 49 50 g 0 0 89 63 254 273 8 19 21 15 259 75 73 100 t 0 0 59 88 9 8 6 245 15 19 7 47 92 62
11599_PK17526.1_M1309_1.02_CISBP_1.02__shift2 (11599_PK17526.1_M1309_1.02_CISBP_1.02_)	0.910	0.758	6.166	0.740	0.939	0.748	0.963	8	2	13	2	5	9	6	6.429	1	; dyads_test_vs_ctrl_m1 versus 11599_PK17526.1_M1309_1.02_CISBP_1.02_; m=1/12; ncol2=10; w=10; offset=0; strand=D; shift=2; score= 6.4286; --wtGGATAAkr-- ; cor=0.910; Ncor=0.758; logoDP=6.166; NIcor=0.740; NsEucl=0.939; SSD=0.748; NSW=0.963; rcor=8; rNcor=2; rlogoDP=13; rNIcor=2; rNsEucl=5; rSSD=9; rNSW=6; rank_mean=6.429; match_rank=1 a 0 0 29 13 0 0 100 0 100 72 16 32 0 0 c 0 0 20 12 0 0 0 0 0 0 24 22 0 0 g 0 0 20 12 100 100 0 0 0 9 35 34 0 0 t 0 0 31 63 0 0 0 100 0 19 25 12 0 0
10671_AT5G47390_M1344_1.02_CISBP_1.02__shift2 (10671_AT5G47390_M1344_1.02_CISBP_1.02_)	0.935	0.779	4.053	0.769	0.950	0.495	0.975	2	1	38	1	2	2	2	6.857	2	; dyads_test_vs_ctrl_m1 versus 10671_AT5G47390_M1344_1.02_CISBP_1.02_; m=2/12; ncol2=10; w=10; offset=0; strand=D; shift=2; score= 6.8571; --ayGGATAAgg-- ; cor=0.935; Ncor=0.779; logoDP=4.053; NIcor=0.769; NsEucl=0.950; SSD=0.495; NSW=0.975; rcor=2; rNcor=1; rlogoDP=38; rNIcor=1; rNsEucl=2; rSSD=2; rNSW=2; rank_mean=6.857; match_rank=2 a 0 0 37 23 19 1 92 1 78 74 14 22 0 0 c 0 0 19 30 4 2 0 0 6 1 22 15 0 0 g 0 0 23 5 72 94 3 0 6 17 50 47 0 0 t 0 0 21 42 5 3 5 99 10 8 14 16 0 0
11605_PK23829.1_M1311_1.02_CISBP_1.02__shift3 (11605_PK23829.1_M1311_1.02_CISBP_1.02_)	0.921	0.614	6.148	0.602	0.929	0.651	0.959	6	21	14	12	18	5	10	12.286	3	; dyads_test_vs_ctrl_m1 versus 11605_PK23829.1_M1311_1.02_CISBP_1.02_; m=3/12; ncol2=8; w=8; offset=1; strand=D; shift=3; score=12.2857; ---yGGATAAb--- ; cor=0.921; Ncor=0.614; logoDP=6.148; NIcor=0.602; NsEucl=0.929; SSD=0.651; NSW=0.959; rcor=6; rNcor=21; rlogoDP=14; rNIcor=12; rNsEucl=18; rSSD=5; rNSW=10; rank_mean=12.286; match_rank=3 a 0 0 0 19 3 0 100 0 100 78 4 0 0 0 c 0 0 0 33 0 0 0 0 0 0 35 0 0 0 g 0 0 0 0 97 100 0 0 0 9 35 0 0 0 t 0 0 0 48 0 0 0 100 0 13 26 0 0 0
10666_AT5G04760_M1336_1.02_CISBP_1.02__shift3 (10666_AT5G04760_M1336_1.02_CISBP_1.02_)	0.875	0.729	5.794	0.715	0.928	1.024	0.949	21	5	16	4	19	23	20	15.429	4	; dyads_test_vs_ctrl_m1 versus 10666_AT5G04760_M1336_1.02_CISBP_1.02_; m=4/12; ncol2=10; w=10; offset=1; strand=D; shift=3; score=15.4286; ---ydGATAAGGy- ; cor=0.875; Ncor=0.729; logoDP=5.794; NIcor=0.715; NsEucl=0.928; SSD=1.024; NSW=0.949; rcor=21; rNcor=5; rlogoDP=16; rNIcor=4; rNsEucl=19; rSSD=23; rNSW=20; rank_mean=15.429; match_rank=4 a 0 0 0 15 36 0 100 0 91 100 10 10 17 0 c 0 0 0 35 8 0 0 0 9 0 9 10 28 0 g 0 0 0 16 30 100 0 0 0 0 71 71 18 0 t 0 0 0 34 26 0 0 100 0 0 10 9 37 0
10634_AT1G19000_M1318_1.02_CISBP_1.02__shift1 (10634_AT1G19000_M1318_1.02_CISBP_1.02_)	0.897	0.621	3.454	0.603	0.931	0.763	0.958	12	19	50	11	12	11	12	18.143	5	; dyads_test_vs_ctrl_m1 versus 10634_AT1G19000_M1318_1.02_CISBP_1.02_; m=5/12; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=18.1429; -wdyrGATaar--- ; cor=0.897; Ncor=0.621; logoDP=3.454; NIcor=0.603; NsEucl=0.931; SSD=0.763; NSW=0.958; rcor=12; rNcor=19; rlogoDP=50; rNIcor=11; rNsEucl=12; rSSD=11; rNSW=12; rank_mean=18.143; match_rank=5 a 0 35 30 16 25 3 92 2 65 59 26 0 0 0 c 0 14 16 32 9 1 3 1 10 4 22 0 0 0 g 0 14 25 9 61 95 4 0 11 22 35 0 0 0 t 0 37 29 43 5 1 1 97 14 15 17 0 0 0
11608_PK29550.1_M1314_1.02_CISBP_1.02__shift2 (11608_PK29550.1_M1314_1.02_CISBP_1.02_)	0.887	0.740	2.348	0.721	0.931	0.947	0.953	17	3	65	3	13	20	16	19.571	7	; dyads_test_vs_ctrl_m1 versus 11608_PK29550.1_M1314_1.02_CISBP_1.02_; m=6/12; ncol2=10; w=10; offset=0; strand=D; shift=2; score=19.5714; --wyrGATaagr-- ; cor=0.887; Ncor=0.740; logoDP=2.348; NIcor=0.721; NsEucl=0.931; SSD=0.947; NSW=0.953; rcor=17; rNcor=3; rlogoDP=65; rNIcor=3; rNsEucl=13; rSSD=20; rNSW=16; rank_mean=19.571; match_rank=7 a 0 0 27 24 30 7 84 5 57 54 21 25 0 0 c 0 0 22 28 9 3 5 3 13 5 24 20 0 0 g 0 0 24 14 54 86 7 3 12 24 35 36 0 0 t 0 0 27 34 7 4 4 89 18 17 20 19 0 0
11590_PK00738.1_M1302_1.02_CISBP_1.02__shift1 (11590_PK00738.1_M1302_1.02_CISBP_1.02_)	0.896	0.621	3.408	0.599	0.931	0.779	0.957	14	20	51	13	15	13	13	19.857	9	; dyads_test_vs_ctrl_m1 versus 11590_PK00738.1_M1302_1.02_CISBP_1.02_; m=7/12; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=19.8571; -wdyrGATaag--- ; cor=0.896; Ncor=0.621; logoDP=3.408; NIcor=0.599; NsEucl=0.931; SSD=0.779; NSW=0.957; rcor=14; rNcor=20; rlogoDP=51; rNIcor=13; rNsEucl=15; rSSD=13; rNSW=13; rank_mean=19.857; match_rank=9 a 0 34 28 22 28 1 91 1 62 57 22 0 0 0 c 0 17 20 28 9 2 2 2 11 5 22 0 0 0 g 0 17 25 11 58 96 6 0 11 23 36 0 0 0 t 0 32 27 39 5 1 1 97 16 15 20 0 0 0
10570_0600010132_M1390_1.02_CISBP_1.02__shift0 (10570_0600010132_M1390_1.02_CISBP_1.02_)	0.842	0.662	5.020	0.668	0.930	1.189	0.946	43	15	25	6	16	32	23	22.857	13	; dyads_test_vs_ctrl_m1 versus 10570_0600010132_M1390_1.02_CISBP_1.02_; m=8/12; ncol2=13; w=11; offset=-2; strand=D; shift=0; score=22.8571; atscGGATAaybt- ; cor=0.842; Ncor=0.662; logoDP=5.020; NIcor=0.668; NsEucl=0.930; SSD=1.189; NSW=0.946; rcor=43; rNcor=15; rlogoDP=25; rNIcor=6; rNsEucl=16; rSSD=32; rNSW=23; rank_mean=22.857; match_rank=13 a 33 20 17 19 12 0 100 0 81 66 8 15 23 0 c 23 20 39 50 2 0 0 0 13 5 39 25 23 0 g 22 19 27 10 84 100 0 0 3 15 17 27 22 0 t 22 41 17 21 2 0 0 100 3 14 36 33 32 0
10669_AT5G08520_M1339_1.02_CISBP_1.02__shift3 (10669_AT5G08520_M1339_1.02_CISBP_1.02_)	0.861	0.646	2.469	0.611	0.918	1.099	0.939	31	16	63	9	33	27	29	29.714	20	; dyads_test_vs_ctrl_m1 versus 10669_AT5G08520_M1339_1.02_CISBP_1.02_; m=9/12; ncol2=9; w=9; offset=1; strand=D; shift=3; score=29.7143; ---hrGATargr-- ; cor=0.861; Ncor=0.646; logoDP=2.469; NIcor=0.611; NsEucl=0.918; SSD=1.099; NSW=0.939; rcor=31; rNcor=16; rlogoDP=63; rNIcor=9; rNsEucl=33; rSSD=27; rNSW=29; rank_mean=29.714; match_rank=20 a 0 0 0 25 28 4 78 1 54 50 21 25 0 0 c 0 0 0 25 15 3 8 1 13 8 24 21 0 0 g 0 0 0 21 42 89 12 0 15 25 37 34 0 0 t 0 0 0 29 15 4 2 98 18 17 18 20 0 0
11606_PK27213.1_M1312_1.02_CISBP_1.02__shift1 (11606_PK27213.1_M1312_1.02_CISBP_1.02_)	0.869	0.602	2.135	0.576	0.919	1.071	0.941	24	22	68	14	32	25	27	30.286	21	; dyads_test_vs_ctrl_m1 versus 11606_PK27213.1_M1312_1.02_CISBP_1.02_; m=10/12; ncol2=10; w=9; offset=-1; strand=D; shift=1; score=30.2857; -wmwrGATaas--- ; cor=0.869; Ncor=0.602; logoDP=2.135; NIcor=0.576; NsEucl=0.919; SSD=1.071; NSW=0.941; rcor=24; rNcor=22; rlogoDP=68; rNIcor=14; rNsEucl=32; rSSD=25; rNSW=27; rank_mean=30.286; match_rank=21 a 0 28 28 28 30 5 80 5 57 52 20 0 0 0 c 0 18 25 24 17 4 6 4 12 8 25 0 0 0 g 0 19 23 21 38 85 9 0 13 23 35 0 0 0 t 0 35 24 27 15 6 5 91 18 17 20 0 0 0
12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__shift3 (12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_)	0.847	0.635	2.552	0.605	0.915	1.180	0.934	40	18	61	10	35	31	32	32.429	26	; dyads_test_vs_ctrl_m1 versus 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02_; m=11/12; ncol2=9; w=9; offset=1; strand=D; shift=3; score=32.4286; ---ygGATarsg-- ; cor=0.847; Ncor=0.635; logoDP=2.552; NIcor=0.605; NsEucl=0.915; SSD=1.180; NSW=0.934; rcor=40; rNcor=18; rlogoDP=61; rNIcor=10; rNsEucl=35; rSSD=31; rNSW=32; rank_mean=32.429; match_rank=26 a 0 0 0 20 22 1 76 0 43 43 19 21 0 0 c 0 0 0 30 14 2 7 4 15 9 25 20 0 0 g 0 0 0 21 55 94 17 3 23 30 37 42 0 0 t 0 0 0 29 9 3 0 93 19 18 19 17 0 0
725_M01015_TRANSFAC_2012.1__shift7 (725_M01015_TRANSFAC_2012.1_)	0.848	0.457	3.071	0.443	0.890	1.192	0.915	39	51	55	31	75	33	52	48.000	51	; dyads_test_vs_ctrl_m1 versus 725_M01015_TRANSFAC_2012.1_; m=12/12; ncol2=8; w=7; offset=5; strand=D; shift=7; score= 48; -------TAAGAAr ; cor=0.848; Ncor=0.457; logoDP=3.071; NIcor=0.443; NsEucl=0.890; SSD=1.192; NSW=0.915; rcor=39; rNcor=51; rlogoDP=55; rNIcor=31; rNsEucl=75; rSSD=33; rNSW=52; rank_mean=48.000; match_rank=51 a 0 0 0 0 0 0 0 0 36 36 0 35 37 10 c 0 0 0 0 0 0 0 2 0 0 0 3 0 1 g 0 0 0 0 0 0 0 3 0 1 36 0 1 25 t 0 0 0 0 0 0 0 33 2 1 2 0 0 2

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m1_shift0 ; 12 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m1_shift0 (oligos_5-7nt_m1)
; oligos_5-7nt_m1; m=0 (reference); ncol1=13; shift=0; ncol=14; cacCTTATCCaby- ; Alignment reference a 27 51 11 3 4 6 128 1 4 3 65 20 29 0 c 64 29 92 128 4 6 9 1 130 120 22 39 40 0 g 21 26 12 5 5 4 1 0 3 6 28 39 28 0 t 26 32 23 2 125 122 0 136 1 9 23 40 41 0

10671_AT5G47390_M1344_1.02_CISBP_1.02__rc_shift2 (10671_AT5G47390_M1344_1.02_CISBP_1.02__rc) 0.953 0.733 2.915 0.167 0.952 0.468 0.977 1 4 57 66 1 1 1 18.714 6
; oligos_5-7nt_m1 versus 10671_AT5G47390_M1344_1.02_CISBP_1.02__rc; m=1/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=18.7143; --ccTTATCCrt-- ; cor=0.953; Ncor=0.733; logoDP=2.915; NIcor=0.167; NsEucl=0.952; SSD=0.468; NSW=0.977; rcor=1; rNcor=4; rlogoDP=57; rNIcor=66; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=18.714; match_rank=6 a 0 0 16 14 8 10 99 5 3 5 42 21 0 0 c 0 0 47 50 17 6 0 3 94 72 5 23 0 0 g 0 0 15 22 1 6 0 0 2 4 30 19 0 0 t 0 0 22 14 74 78 1 92 1 19 23 37 0 0

10666_AT5G04760_M1336_1.02_CISBP_1.02__rc_shift1 (10666_AT5G04760_M1336_1.02_CISBP_1.02__rc) 0.929 0.715 2.339 0.071 0.944 0.627 0.969 3 7 66 71 4 4 4 22.714 12
; oligos_5-7nt_m1 versus 10666_AT5G04760_M1336_1.02_CISBP_1.02__rc; m=2/11; ncol2=10; w=10; offset=1; strand=R; shift=1; score=22.7143; -rCCTTATChr--- ; cor=0.929; Ncor=0.715; logoDP=2.339; NIcor=0.071; NsEucl=0.944; SSD=0.627; NSW=0.969; rcor=3; rNcor=7; rlogoDP=66; rNIcor=71; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=22.714; match_rank=12 a 0 37 9 10 0 0 100 0 0 26 34 0 0 0 c 0 18 71 71 0 0 0 0 100 30 16 0 0 0 g 0 28 10 9 0 9 0 0 0 8 35 0 0 0 t 0 17 10 10 100 91 0 100 0 36 15 0 0 0

11599_PK17526.1_M1309_1.02_CISBP_1.02__rc_shift2 (11599_PK17526.1_M1309_1.02_CISBP_1.02__rc) 0.910 0.700 3.388 0.127 0.937 0.796 0.960 7 9 52 67 6 14 9 23.429 14
; oligos_5-7nt_m1 versus 11599_PK17526.1_M1309_1.02_CISBP_1.02__rc; m=3/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=23.4286; --ymTTATCCaw-- ; cor=0.910; Ncor=0.700; logoDP=3.388; NIcor=0.127; NsEucl=0.937; SSD=0.796; NSW=0.960; rcor=7; rNcor=9; rlogoDP=52; rNIcor=67; rNsEucl=6; rSSD=14; rNSW=9; rank_mean=23.429; match_rank=14 a 0 0 12 25 19 0 100 0 0 0 63 31 0 0 c 0 0 34 35 9 0 0 0 100 100 12 20 0 0 g 0 0 22 24 0 0 0 0 0 0 12 20 0 0 t 0 0 32 16 72 100 0 100 0 0 13 29 0 0

11605_PK23829.1_M1311_1.02_CISBP_1.02__rc_shift3 (11605_PK23829.1_M1311_1.02_CISBP_1.02__rc) 0.929 0.572 3.459 0.107 0.931 0.609 0.962 4 25 49 68 14 3 8 24.429 16
; oligos_5-7nt_m1 versus 11605_PK23829.1_M1311_1.02_CISBP_1.02__rc; m=4/11; ncol2=8; w=8; offset=3; strand=R; shift=3; score=24.4286; ---vTTATCCr--- ; cor=0.929; Ncor=0.572; logoDP=3.459; NIcor=0.107; NsEucl=0.931; SSD=0.609; NSW=0.962; rcor=4; rNcor=25; rlogoDP=49; rNIcor=68; rNsEucl=14; rSSD=3; rNSW=8; rank_mean=24.429; match_rank=16 a 0 0 0 26 13 0 100 0 0 0 48 0 0 0 c 0 0 0 35 9 0 0 0 100 97 0 0 0 0 g 0 0 0 35 0 0 0 0 0 0 33 0 0 0 t 0 0 0 4 78 100 0 100 0 3 19 0 0 0

10634_AT1G19000_M1318_1.02_CISBP_1.02__rc_shift3 (10634_AT1G19000_M1318_1.02_CISBP_1.02__rc) 0.895 0.688 0.350 -0.098 0.933 0.905 0.955 15 11 76 74 9 18 14 31.000 24
; oligos_5-7nt_m1 versus 10634_AT1G19000_M1318_1.02_CISBP_1.02__rc; m=5/11; ncol2=10; w=10; offset=3; strand=R; shift=3; score= 31; ---yttATCyrhw- ; cor=0.895; Ncor=0.688; logoDP=0.350; NIcor=-0.098; NsEucl=0.933; SSD=0.905; NSW=0.955; rcor=15; rNcor=11; rlogoDP=76; rNIcor=74; rNsEucl=9; rSSD=18; rNSW=14; rank_mean=31.000; match_rank=24 a 0 0 0 17 15 14 97 1 1 5 43 29 37 0 c 0 0 0 35 22 11 0 4 95 61 9 25 14 0 g 0 0 0 22 4 10 1 3 1 9 32 16 14 0 t 0 0 0 26 59 65 2 92 3 25 16 30 35 0

11590_PK00738.1_M1302_1.02_CISBP_1.02__rc_shift3 (11590_PK00738.1_M1302_1.02_CISBP_1.02__rc) 0.897 0.690 0.313 -0.100 0.932 0.912 0.954 13 10 77 75 10 19 15 31.286 25
; oligos_5-7nt_m1 versus 11590_PK00738.1_M1302_1.02_CISBP_1.02__rc; m=6/11; ncol2=10; w=10; offset=3; strand=R; shift=3; score=31.2857; ---cttATCyrhw- ; cor=0.897; Ncor=0.690; logoDP=0.313; NIcor=-0.100; NsEucl=0.932; SSD=0.912; NSW=0.954; rcor=13; rNcor=10; rlogoDP=77; rNIcor=75; rNsEucl=10; rSSD=19; rNSW=15; rank_mean=31.286; match_rank=25 a 0 0 0 20 15 16 97 1 1 5 39 27 32 0 c 0 0 0 36 23 11 0 6 96 58 11 25 17 0 g 0 0 0 22 5 11 2 2 2 9 28 20 17 0 t 0 0 0 22 57 62 1 91 1 28 22 28 34 0

11608_PK29550.1_M1314_1.02_CISBP_1.02__rc_shift2 (11608_PK29550.1_M1314_1.02_CISBP_1.02__rc) 0.892 0.686 1.867 0.208 0.924 1.167 0.942 16 12 70 65 25 29 26 34.714 28
; oligos_5-7nt_m1 versus 11608_PK29550.1_M1314_1.02_CISBP_1.02__rc; m=7/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=34.7143; --ycttATCyrw-- ; cor=0.892; Ncor=0.686; logoDP=1.867; NIcor=0.208; NsEucl=0.924; SSD=1.167; NSW=0.942; rcor=16; rNcor=12; rlogoDP=70; rNIcor=65; rNsEucl=25; rSSD=29; rNSW=26; rank_mean=34.714; match_rank=28 a 0 0 19 20 17 18 89 4 4 7 34 27 0 0 c 0 0 36 35 24 12 3 7 86 54 14 24 0 0 g 0 0 20 24 5 13 3 5 3 9 28 22 0 0 t 0 0 25 21 54 57 5 84 7 30 24 27 0 0

11606_PK27213.1_M1312_1.02_CISBP_1.02__rc_shift3 (11606_PK27213.1_M1312_1.02_CISBP_1.02__rc) 0.866 0.666 0.251 -0.123 0.920 1.284 0.936 27 13 78 77 29 37 31 41.714 39
; oligos_5-7nt_m1 versus 11606_PK27213.1_M1312_1.02_CISBP_1.02__rc; m=8/11; ncol2=10; w=10; offset=3; strand=R; shift=3; score=41.7143; ---sttATCywkw- ; cor=0.866; Ncor=0.666; logoDP=0.251; NIcor=-0.123; NsEucl=0.920; SSD=1.284; NSW=0.936; rcor=27; rNcor=13; rlogoDP=78; rNIcor=77; rNsEucl=29; rSSD=37; rNSW=31; rank_mean=41.714; match_rank=39 a 0 0 0 20 17 18 91 5 6 15 27 24 35 0 c 0 0 0 35 23 13 0 9 85 38 21 23 19 0 g 0 0 0 25 8 12 4 6 4 17 24 25 18 0 t 0 0 0 20 52 57 5 80 5 30 28 28 28 0

10570_0600010132_M1390_1.02_CISBP_1.02__rc_shift1 (10570_0600010132_M1390_1.02_CISBP_1.02__rc) 0.830 0.711 0.242 -0.108 0.929 1.438 0.940 46 8 80 76 17 45 28 42.857 40
; oligos_5-7nt_m1 versus 10570_0600010132_M1390_1.02_CISBP_1.02__rc; m=9/11; ncol2=13; w=12; offset=1; strand=R; shift=1; score=42.8571; -avrtTATCCgsat ; cor=0.830; Ncor=0.711; logoDP=0.242; NIcor=-0.108; NsEucl=0.929; SSD=1.438; NSW=0.940; rcor=46; rNcor=8; rlogoDP=80; rNIcor=76; rNsEucl=17; rSSD=45; rNSW=28; rank_mean=42.857; match_rank=40 a 0 32 33 36 14 3 100 0 0 2 21 17 41 22 c 0 22 27 17 15 3 0 0 100 84 10 27 19 22 g 0 23 25 39 5 13 0 0 0 2 50 39 20 23 t 0 23 15 8 66 81 0 100 0 12 19 17 20 33

10669_AT5G08520_M1339_1.02_CISBP_1.02__rc_shift2 (10669_AT5G08520_M1339_1.02_CISBP_1.02__rc) 0.863 0.598 0.204 -0.159 0.909 1.346 0.925 28 23 81 81 45 41 38 48.143 52
; oligos_5-7nt_m1 versus 10669_AT5G08520_M1339_1.02_CISBP_1.02__rc; m=10/11; ncol2=9; w=9; offset=2; strand=R; shift=2; score=48.1429; --ycytATCyd--- ; cor=0.863; Ncor=0.598; logoDP=0.204; NIcor=-0.159; NsEucl=0.909; SSD=1.346; NSW=0.925; rcor=28; rNcor=23; rlogoDP=81; rNIcor=81; rNsEucl=45; rSSD=41; rNSW=38; rank_mean=48.143; match_rank=52 a 0 0 20 18 17 18 98 2 4 15 29 0 0 0 c 0 0 34 37 25 15 0 12 89 42 21 0 0 0 g 0 0 21 24 8 13 1 8 3 15 25 0 0 0 t 0 0 25 21 50 54 1 78 4 28 25 0 0 0

12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__rc_shift2 (12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__rc) 0.859 0.595 0.183 -0.147 0.908 1.372 0.924 32 24 82 80 46 42 40 49.429 54
; oligos_5-7nt_m1 versus 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__rc; m=11/11; ncol2=9; w=9; offset=2; strand=R; shift=2; score=49.4286; --csytATCcr--- ; cor=0.859; Ncor=0.595; logoDP=0.183; NIcor=-0.147; NsEucl=0.908; SSD=1.372; NSW=0.924; rcor=32; rNcor=24; rlogoDP=82; rNIcor=80; rNsEucl=46; rSSD=42; rNSW=40; rank_mean=49.429; match_rank=54 a 0 0 17 19 18 19 93 0 3 9 29 0 0 0 c 0 0 42 37 30 23 3 17 94 55 21 0 0 0 g 0 0 20 25 9 15 4 7 2 14 30 0 0 0 t 0 0 21 19 43 43 0 76 1 22 20 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m1_shift0 (oligos_5-7nt_m1)																	; oligos_5-7nt_m1; m=0 (reference); ncol1=13; shift=0; ncol=14; cacCTTATCCaby- ; Alignment reference a 27 51 11 3 4 6 128 1 4 3 65 20 29 0 c 64 29 92 128 4 6 9 1 130 120 22 39 40 0 g 21 26 12 5 5 4 1 0 3 6 28 39 28 0 t 26 32 23 2 125 122 0 136 1 9 23 40 41 0
10671_AT5G47390_M1344_1.02_CISBP_1.02__rc_shift2 (10671_AT5G47390_M1344_1.02_CISBP_1.02__rc)	0.953	0.733	2.915	0.167	0.952	0.468	0.977	1	4	57	66	1	1	1	18.714	6	; oligos_5-7nt_m1 versus 10671_AT5G47390_M1344_1.02_CISBP_1.02__rc; m=1/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=18.7143; --ccTTATCCrt-- ; cor=0.953; Ncor=0.733; logoDP=2.915; NIcor=0.167; NsEucl=0.952; SSD=0.468; NSW=0.977; rcor=1; rNcor=4; rlogoDP=57; rNIcor=66; rNsEucl=1; rSSD=1; rNSW=1; rank_mean=18.714; match_rank=6 a 0 0 16 14 8 10 99 5 3 5 42 21 0 0 c 0 0 47 50 17 6 0 3 94 72 5 23 0 0 g 0 0 15 22 1 6 0 0 2 4 30 19 0 0 t 0 0 22 14 74 78 1 92 1 19 23 37 0 0
10666_AT5G04760_M1336_1.02_CISBP_1.02__rc_shift1 (10666_AT5G04760_M1336_1.02_CISBP_1.02__rc)	0.929	0.715	2.339	0.071	0.944	0.627	0.969	3	7	66	71	4	4	4	22.714	12	; oligos_5-7nt_m1 versus 10666_AT5G04760_M1336_1.02_CISBP_1.02__rc; m=2/11; ncol2=10; w=10; offset=1; strand=R; shift=1; score=22.7143; -rCCTTATChr--- ; cor=0.929; Ncor=0.715; logoDP=2.339; NIcor=0.071; NsEucl=0.944; SSD=0.627; NSW=0.969; rcor=3; rNcor=7; rlogoDP=66; rNIcor=71; rNsEucl=4; rSSD=4; rNSW=4; rank_mean=22.714; match_rank=12 a 0 37 9 10 0 0 100 0 0 26 34 0 0 0 c 0 18 71 71 0 0 0 0 100 30 16 0 0 0 g 0 28 10 9 0 9 0 0 0 8 35 0 0 0 t 0 17 10 10 100 91 0 100 0 36 15 0 0 0
11599_PK17526.1_M1309_1.02_CISBP_1.02__rc_shift2 (11599_PK17526.1_M1309_1.02_CISBP_1.02__rc)	0.910	0.700	3.388	0.127	0.937	0.796	0.960	7	9	52	67	6	14	9	23.429	14	; oligos_5-7nt_m1 versus 11599_PK17526.1_M1309_1.02_CISBP_1.02__rc; m=3/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=23.4286; --ymTTATCCaw-- ; cor=0.910; Ncor=0.700; logoDP=3.388; NIcor=0.127; NsEucl=0.937; SSD=0.796; NSW=0.960; rcor=7; rNcor=9; rlogoDP=52; rNIcor=67; rNsEucl=6; rSSD=14; rNSW=9; rank_mean=23.429; match_rank=14 a 0 0 12 25 19 0 100 0 0 0 63 31 0 0 c 0 0 34 35 9 0 0 0 100 100 12 20 0 0 g 0 0 22 24 0 0 0 0 0 0 12 20 0 0 t 0 0 32 16 72 100 0 100 0 0 13 29 0 0
11605_PK23829.1_M1311_1.02_CISBP_1.02__rc_shift3 (11605_PK23829.1_M1311_1.02_CISBP_1.02__rc)	0.929	0.572	3.459	0.107	0.931	0.609	0.962	4	25	49	68	14	3	8	24.429	16	; oligos_5-7nt_m1 versus 11605_PK23829.1_M1311_1.02_CISBP_1.02__rc; m=4/11; ncol2=8; w=8; offset=3; strand=R; shift=3; score=24.4286; ---vTTATCCr--- ; cor=0.929; Ncor=0.572; logoDP=3.459; NIcor=0.107; NsEucl=0.931; SSD=0.609; NSW=0.962; rcor=4; rNcor=25; rlogoDP=49; rNIcor=68; rNsEucl=14; rSSD=3; rNSW=8; rank_mean=24.429; match_rank=16 a 0 0 0 26 13 0 100 0 0 0 48 0 0 0 c 0 0 0 35 9 0 0 0 100 97 0 0 0 0 g 0 0 0 35 0 0 0 0 0 0 33 0 0 0 t 0 0 0 4 78 100 0 100 0 3 19 0 0 0
10634_AT1G19000_M1318_1.02_CISBP_1.02__rc_shift3 (10634_AT1G19000_M1318_1.02_CISBP_1.02__rc)	0.895	0.688	0.350	-0.098	0.933	0.905	0.955	15	11	76	74	9	18	14	31.000	24	; oligos_5-7nt_m1 versus 10634_AT1G19000_M1318_1.02_CISBP_1.02__rc; m=5/11; ncol2=10; w=10; offset=3; strand=R; shift=3; score= 31; ---yttATCyrhw- ; cor=0.895; Ncor=0.688; logoDP=0.350; NIcor=-0.098; NsEucl=0.933; SSD=0.905; NSW=0.955; rcor=15; rNcor=11; rlogoDP=76; rNIcor=74; rNsEucl=9; rSSD=18; rNSW=14; rank_mean=31.000; match_rank=24 a 0 0 0 17 15 14 97 1 1 5 43 29 37 0 c 0 0 0 35 22 11 0 4 95 61 9 25 14 0 g 0 0 0 22 4 10 1 3 1 9 32 16 14 0 t 0 0 0 26 59 65 2 92 3 25 16 30 35 0
11590_PK00738.1_M1302_1.02_CISBP_1.02__rc_shift3 (11590_PK00738.1_M1302_1.02_CISBP_1.02__rc)	0.897	0.690	0.313	-0.100	0.932	0.912	0.954	13	10	77	75	10	19	15	31.286	25	; oligos_5-7nt_m1 versus 11590_PK00738.1_M1302_1.02_CISBP_1.02__rc; m=6/11; ncol2=10; w=10; offset=3; strand=R; shift=3; score=31.2857; ---cttATCyrhw- ; cor=0.897; Ncor=0.690; logoDP=0.313; NIcor=-0.100; NsEucl=0.932; SSD=0.912; NSW=0.954; rcor=13; rNcor=10; rlogoDP=77; rNIcor=75; rNsEucl=10; rSSD=19; rNSW=15; rank_mean=31.286; match_rank=25 a 0 0 0 20 15 16 97 1 1 5 39 27 32 0 c 0 0 0 36 23 11 0 6 96 58 11 25 17 0 g 0 0 0 22 5 11 2 2 2 9 28 20 17 0 t 0 0 0 22 57 62 1 91 1 28 22 28 34 0
11608_PK29550.1_M1314_1.02_CISBP_1.02__rc_shift2 (11608_PK29550.1_M1314_1.02_CISBP_1.02__rc)	0.892	0.686	1.867	0.208	0.924	1.167	0.942	16	12	70	65	25	29	26	34.714	28	; oligos_5-7nt_m1 versus 11608_PK29550.1_M1314_1.02_CISBP_1.02__rc; m=7/11; ncol2=10; w=10; offset=2; strand=R; shift=2; score=34.7143; --ycttATCyrw-- ; cor=0.892; Ncor=0.686; logoDP=1.867; NIcor=0.208; NsEucl=0.924; SSD=1.167; NSW=0.942; rcor=16; rNcor=12; rlogoDP=70; rNIcor=65; rNsEucl=25; rSSD=29; rNSW=26; rank_mean=34.714; match_rank=28 a 0 0 19 20 17 18 89 4 4 7 34 27 0 0 c 0 0 36 35 24 12 3 7 86 54 14 24 0 0 g 0 0 20 24 5 13 3 5 3 9 28 22 0 0 t 0 0 25 21 54 57 5 84 7 30 24 27 0 0
11606_PK27213.1_M1312_1.02_CISBP_1.02__rc_shift3 (11606_PK27213.1_M1312_1.02_CISBP_1.02__rc)	0.866	0.666	0.251	-0.123	0.920	1.284	0.936	27	13	78	77	29	37	31	41.714	39	; oligos_5-7nt_m1 versus 11606_PK27213.1_M1312_1.02_CISBP_1.02__rc; m=8/11; ncol2=10; w=10; offset=3; strand=R; shift=3; score=41.7143; ---sttATCywkw- ; cor=0.866; Ncor=0.666; logoDP=0.251; NIcor=-0.123; NsEucl=0.920; SSD=1.284; NSW=0.936; rcor=27; rNcor=13; rlogoDP=78; rNIcor=77; rNsEucl=29; rSSD=37; rNSW=31; rank_mean=41.714; match_rank=39 a 0 0 0 20 17 18 91 5 6 15 27 24 35 0 c 0 0 0 35 23 13 0 9 85 38 21 23 19 0 g 0 0 0 25 8 12 4 6 4 17 24 25 18 0 t 0 0 0 20 52 57 5 80 5 30 28 28 28 0
10570_0600010132_M1390_1.02_CISBP_1.02__rc_shift1 (10570_0600010132_M1390_1.02_CISBP_1.02__rc)	0.830	0.711	0.242	-0.108	0.929	1.438	0.940	46	8	80	76	17	45	28	42.857	40	; oligos_5-7nt_m1 versus 10570_0600010132_M1390_1.02_CISBP_1.02__rc; m=9/11; ncol2=13; w=12; offset=1; strand=R; shift=1; score=42.8571; -avrtTATCCgsat ; cor=0.830; Ncor=0.711; logoDP=0.242; NIcor=-0.108; NsEucl=0.929; SSD=1.438; NSW=0.940; rcor=46; rNcor=8; rlogoDP=80; rNIcor=76; rNsEucl=17; rSSD=45; rNSW=28; rank_mean=42.857; match_rank=40 a 0 32 33 36 14 3 100 0 0 2 21 17 41 22 c 0 22 27 17 15 3 0 0 100 84 10 27 19 22 g 0 23 25 39 5 13 0 0 0 2 50 39 20 23 t 0 23 15 8 66 81 0 100 0 12 19 17 20 33
10669_AT5G08520_M1339_1.02_CISBP_1.02__rc_shift2 (10669_AT5G08520_M1339_1.02_CISBP_1.02__rc)	0.863	0.598	0.204	-0.159	0.909	1.346	0.925	28	23	81	81	45	41	38	48.143	52	; oligos_5-7nt_m1 versus 10669_AT5G08520_M1339_1.02_CISBP_1.02__rc; m=10/11; ncol2=9; w=9; offset=2; strand=R; shift=2; score=48.1429; --ycytATCyd--- ; cor=0.863; Ncor=0.598; logoDP=0.204; NIcor=-0.159; NsEucl=0.909; SSD=1.346; NSW=0.925; rcor=28; rNcor=23; rlogoDP=81; rNIcor=81; rNsEucl=45; rSSD=41; rNSW=38; rank_mean=48.143; match_rank=52 a 0 0 20 18 17 18 98 2 4 15 29 0 0 0 c 0 0 34 37 25 15 0 12 89 42 21 0 0 0 g 0 0 21 24 8 13 1 8 3 15 25 0 0 0 t 0 0 25 21 50 54 1 78 4 28 25 0 0 0
12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__rc_shift2 (12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__rc)	0.859	0.595	0.183	-0.147	0.908	1.372	0.924	32	24	82	80	46	42	40	49.429	54	; oligos_5-7nt_m1 versus 12213_fgenesh1_pg.scaffold_70000111__CISBP_1.02__rc; m=11/11; ncol2=9; w=9; offset=2; strand=R; shift=2; score=49.4286; --csytATCcr--- ; cor=0.859; Ncor=0.595; logoDP=0.183; NIcor=-0.147; NsEucl=0.908; SSD=1.372; NSW=0.924; rcor=32; rNcor=24; rlogoDP=82; rNIcor=80; rNsEucl=46; rSSD=42; rNSW=40; rank_mean=49.429; match_rank=54 a 0 0 17 19 18 19 93 0 3 9 29 0 0 0 c 0 0 42 37 30 23 3 17 94 55 21 0 0 0 g 0 0 20 25 9 15 4 7 2 14 30 0 0 0 t 0 0 21 19 43 43 0 76 1 22 20 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m3_shift9 ; 56 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m3_shift9 (oligos_5-7nt_m3)
; oligos_5-7nt_m3; m=0 (reference); ncol1=16; shift=9; ncol=25; ---------sbACGTGGCCACawsg ; Alignment reference a 0 0 0 0 0 0 0 0 0 12 11 43 3 5 0 0 2 6 1 45 4 42 21 10 11 c 0 0 0 0 0 0 0 0 0 25 20 11 56 2 6 2 1 55 55 4 49 13 10 20 14 g 0 0 0 0 0 0 0 0 0 16 16 4 2 51 3 58 58 2 5 8 4 6 12 21 25 t 0 0 0 0 0 0 0 0 0 10 16 5 2 5 54 3 2 0 2 6 6 2 20 12 13

348_M00367_TRANSFAC_2012.1__shift8 (348_M00367_TRANSFAC_2012.1_) 0.908 0.480 4.682 0.464 0.932 0.750 0.958 10 40 31 25 11 10 11 19.714 8
; oligos_5-7nt_m3 versus 348_M00367_TRANSFAC_2012.1_; m=1/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=19.7143; --------gmsACGTSgC------- ; cor=0.908; Ncor=0.480; logoDP=4.682; NIcor=0.464; NsEucl=0.932; SSD=0.750; NSW=0.958; rcor=10; rNcor=40; rlogoDP=31; rNIcor=25; rNsEucl=11; rSSD=10; rNSW=11; rank_mean=19.714; match_rank=8 a 0 0 0 0 0 0 0 0 2 4 0 17 0 0 0 0 3 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 7 11 0 17 0 0 4 0 10 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 9 1 5 0 0 17 0 12 8 1 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 3 1 0 0 0 17 0 3 0 0 0 0 0 0 0 0

12076_bZIP68_M0255_1.02_CISBP_1.02__shift9 (12076_bZIP68_M0255_1.02_CISBP_1.02_) 0.906 0.510 2.513 0.497 0.936 0.673 0.963 11 30 62 19 8 7 7 20.571 10
; oligos_5-7nt_m3 versus 12076_bZIP68_M0255_1.02_CISBP_1.02_; m=2/55; ncol2=9; w=9; offset=0; strand=D; shift=9; score=20.5714; ---------hsacgTGkm------- ; cor=0.906; Ncor=0.510; logoDP=2.513; NIcor=0.497; NsEucl=0.936; SSD=0.673; NSW=0.963; rcor=11; rNcor=30; rlogoDP=62; rNIcor=19; rNsEucl=8; rSSD=7; rNSW=7; rank_mean=20.571; match_rank=10 a 0 0 0 0 0 0 0 0 0 25 19 62 7 12 3 3 0 29 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 34 33 13 65 16 6 0 7 48 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 12 26 14 15 63 0 95 55 13 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 29 22 11 13 9 91 2 38 10 0 0 0 0 0 0 0

1225_M01584_TRANSFAC_2012.1__shift9 (1225_M01584_TRANSFAC_2012.1_) 0.875 0.547 4.835 0.537 0.928 1.027 0.949 22 26 27 15 20 24 21 22.143 11
; oligos_5-7nt_m3 versus 1225_M01584_TRANSFAC_2012.1_; m=3/55; ncol2=10; w=10; offset=0; strand=D; shift=9; score=22.1429; ---------wsACGTGGCg------ ; cor=0.875; Ncor=0.547; logoDP=4.835; NIcor=0.537; NsEucl=0.928; SSD=1.027; NSW=0.949; rcor=22; rNcor=26; rlogoDP=27; rNIcor=15; rNsEucl=20; rSSD=24; rNSW=21; rank_mean=22.143; match_rank=11 a 0 0 0 0 0 0 0 0 0 30 10 97 3 0 1 7 1 21 18 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 17 32 0 100 1 0 2 0 73 23 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 11 42 6 2 106 0 96 95 3 43 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 49 23 4 2 0 106 2 11 10 23 0 0 0 0 0 0

347_M00366_TRANSFAC_2012.1__rc_shift8 (347_M00366_TRANSFAC_2012.1__rc) 0.928 0.492 3.643 0.363 0.936 0.665 0.963 5 35 46 60 7 6 5 23.429 15
; oligos_5-7nt_m3 versus 347_M00366_TRANSFAC_2012.1__rc; m=4/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=23.4286; --------bhCACGTGKC------- ; cor=0.928; Ncor=0.492; logoDP=3.643; NIcor=0.363; NsEucl=0.936; SSD=0.665; NSW=0.963; rcor=5; rNcor=35; rlogoDP=46; rNIcor=60; rNsEucl=7; rSSD=6; rNSW=5; rank_mean=23.429; match_rank=15 a 0 0 0 0 0 0 0 0 2 8 1 24 0 0 0 0 0 4 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 6 9 17 0 22 1 0 0 1 18 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 9 0 5 0 1 23 0 24 16 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 6 1 0 0 0 24 0 6 1 0 0 0 0 0 0 0

8789_MA0128_JASPAR_2014__shift9 (8789_MA0128_JASPAR_2014_) 0.910 0.455 5.091 0.464 0.920 0.828 0.948 9 52 23 26 30 15 22 25.286 17
; oligos_5-7nt_m3 versus 8789_MA0128_JASPAR_2014_; m=5/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=25.2857; ---------WsACGTGG-------- ; cor=0.910; Ncor=0.455; logoDP=5.091; NIcor=0.464; NsEucl=0.920; SSD=0.828; NSW=0.948; rcor=9; rNcor=52; rlogoDP=23; rNIcor=26; rNsEucl=30; rSSD=15; rNSW=22; rank_mean=25.286; match_rank=17 a 0 0 0 0 0 0 0 0 0 9 1 13 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 7 0 12 0 0 1 1 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 4 0 0 13 0 12 12 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 4 1 0 1 0 13 0 0 0 0 0 0 0 0 0 0

1436_M01838_TRANSFAC_2012.1__shift10 (1436_M01838_TRANSFAC_2012.1_) 0.877 0.494 6.880 0.484 0.911 1.271 0.929 19 33 6 21 39 35 35 26.857 18
; oligos_5-7nt_m3 versus 1436_M01838_TRANSFAC_2012.1_; m=6/55; ncol2=9; w=9; offset=1; strand=D; shift=10; score=26.8571; ----------bACGTGGCM------ ; cor=0.877; Ncor=0.494; logoDP=6.880; NIcor=0.484; NsEucl=0.911; SSD=1.271; NSW=0.929; rcor=19; rNcor=33; rlogoDP=6; rNIcor=21; rNsEucl=39; rSSD=35; rNSW=35; rank_mean=26.857; match_rank=18 a 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 6 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 3 0 8 0 0 0 0 8 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 8 7 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 2 0 0 0 8 0 1 0 0 0 0 0 0 0 0

11099_GBF1_M0268_1.02_CISBP_1.02__shift9 (11099_GBF1_M0268_1.02_CISBP_1.02_) 0.854 0.534 3.312 0.521 0.926 1.086 0.946 35 27 54 16 23 26 25 29.429 19
; oligos_5-7nt_m3 versus 11099_GBF1_M0268_1.02_CISBP_1.02_; m=7/55; ncol2=10; w=10; offset=0; strand=D; shift=9; score=29.4286; ---------ysACGTGkmm------ ; cor=0.854; Ncor=0.534; logoDP=3.312; NIcor=0.521; NsEucl=0.926; SSD=1.086; NSW=0.946; rcor=35; rNcor=27; rlogoDP=54; rNIcor=16; rNsEucl=23; rSSD=26; rNSW=25; rank_mean=29.429; match_rank=19 a 0 0 0 0 0 0 0 0 0 20 6 86 2 6 2 5 0 28 37 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 33 32 4 78 13 3 0 5 54 29 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 7 40 5 11 76 0 95 61 10 15 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 40 22 5 9 5 95 0 34 8 19 0 0 0 0 0 0

350_M00369_TRANSFAC_2012.1__shift8 (350_M00369_TRANSFAC_2012.1_) 0.870 0.461 4.225 0.436 0.922 0.974 0.946 23 49 36 34 27 21 24 30.571 22
; oligos_5-7nt_m3 versus 350_M00369_TRANSFAC_2012.1_; m=8/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=30.5714; --------gccACGTSrc------- ; cor=0.870; Ncor=0.461; logoDP=4.225; NIcor=0.436; NsEucl=0.922; SSD=0.974; NSW=0.946; rcor=23; rNcor=49; rlogoDP=36; rNIcor=34; rNsEucl=27; rSSD=21; rNSW=24; rank_mean=30.571; match_rank=22 a 0 0 0 0 0 0 0 0 3 3 1 17 0 0 0 0 4 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 2 8 11 0 17 0 0 5 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 8 1 4 0 0 17 0 12 8 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 3 1 0 0 0 17 0 3 3 0 0 0 0 0 0 0

660_M00943_TRANSFAC_2012.1__shift8 (660_M00943_TRANSFAC_2012.1_) 0.868 0.460 3.472 0.439 0.925 0.903 0.950 26 50 48 33 24 17 19 31.000 23
; oligos_5-7nt_m3 versus 660_M00943_TRANSFAC_2012.1_; m=9/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score= 31; --------gycACGTGgs------- ; cor=0.868; Ncor=0.460; logoDP=3.472; NIcor=0.439; NsEucl=0.925; SSD=0.903; NSW=0.950; rcor=26; rNcor=50; rlogoDP=48; rNIcor=33; rNsEucl=24; rSSD=17; rNSW=19; rank_mean=31.000; match_rank=23 a 0 0 0 0 0 0 0 0 3 3 2 16 0 0 0 0 3 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 7 10 1 16 0 0 4 1 6 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 7 1 4 0 1 16 1 13 8 4 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 4 1 0 0 1 16 0 3 3 0 0 0 0 0 0 0

1408_M01806_TRANSFAC_2012.1__shift9 (1408_M01806_TRANSFAC_2012.1_) 0.868 0.434 4.684 0.429 0.911 1.008 0.937 25 60 30 38 41 22 30 35.143 30
; oligos_5-7nt_m3 versus 1408_M01806_TRANSFAC_2012.1_; m=10/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=35.1429; ---------wsACGTGk-------- ; cor=0.868; Ncor=0.434; logoDP=4.684; NIcor=0.429; NsEucl=0.911; SSD=1.008; NSW=0.937; rcor=25; rNcor=60; rlogoDP=30; rNIcor=38; rNsEucl=41; rSSD=22; rNSW=30; rank_mean=35.143; match_rank=30 a 0 0 0 0 0 0 0 0 0 12 0 45 0 1 1 1 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 9 15 0 45 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 21 0 0 43 0 44 21 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 24 9 0 0 1 44 0 24 0 0 0 0 0 0 0 0

410_M00441_TRANSFAC_2012.1__shift7 (410_M00441_TRANSFAC_2012.1_) 0.845 0.470 5.381 0.448 0.913 1.504 0.925 42 46 19 30 37 49 39 37.429 31
; oligos_5-7nt_m3 versus 410_M00441_TRANSFAC_2012.1_; m=11/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=37.4286; -------KkcCACGTGgCm------ ; cor=0.845; Ncor=0.470; logoDP=5.381; NIcor=0.448; NsEucl=0.913; SSD=1.504; NSW=0.925; rcor=42; rNcor=46; rlogoDP=19; rNIcor=30; rNsEucl=37; rSSD=49; rNSW=39; rank_mean=37.429; match_rank=31 a 0 0 0 0 0 0 0 0 0 2 0 9 0 0 0 0 1 1 4 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 6 8 0 9 0 0 2 0 7 3 0 0 0 0 0 0 g 0 0 0 0 0 0 0 2 5 0 1 0 0 9 0 7 6 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 5 3 1 0 0 0 0 9 0 2 0 0 0 0 0 0 0 0

11100_GBF2_M0266_1.02_CISBP_1.02__rc_shift9 (11100_GBF2_M0266_1.02_CISBP_1.02__rc) 0.879 0.494 0.248 -0.128 0.927 0.870 0.952 18 32 79 78 22 16 18 37.571 32
; oligos_5-7nt_m3 versus 11100_GBF2_M0266_1.02_CISBP_1.02__rc; m=12/55; ncol2=9; w=9; offset=0; strand=R; shift=9; score=37.5714; ---------ybacgTGkm------- ; cor=0.879; Ncor=0.494; logoDP=0.248; NIcor=-0.128; NsEucl=0.927; SSD=0.870; NSW=0.952; rcor=18; rNcor=32; rlogoDP=79; rNIcor=78; rNsEucl=22; rSSD=16; rNSW=18; rank_mean=37.571; match_rank=32 a 0 0 0 0 0 0 0 0 0 20 18 54 7 10 0 9 1 28 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 35 29 14 59 22 6 0 11 43 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 14 28 18 20 59 0 88 51 17 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 31 25 14 14 9 94 3 37 12 0 0 0 0 0 0 0

11984_ZCW32_M0153_1.02_CISBP_1.02__shift8 (11984_ZCW32_M0153_1.02_CISBP_1.02_) 0.862 0.406 2.678 0.399 0.923 0.767 0.952 30 75 59 46 26 12 17 37.857 33
; oligos_5-7nt_m3 versus 11984_ZCW32_M0153_1.02_CISBP_1.02_; m=13/55; ncol2=9; w=8; offset=-1; strand=D; shift=8; score=37.8571; --------sscACGTGs-------- ; cor=0.862; Ncor=0.406; logoDP=2.678; NIcor=0.399; NsEucl=0.923; SSD=0.767; NSW=0.952; rcor=30; rNcor=75; rlogoDP=59; rNIcor=46; rNsEucl=26; rSSD=12; rNSW=17; rank_mean=37.857; match_rank=33 a 0 0 0 0 0 0 0 0 23 22 20 69 2 16 2 1 19 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 27 30 53 10 75 0 5 4 34 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 26 12 14 4 83 0 93 26 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 21 22 15 7 19 1 93 2 21 0 0 0 0 0 0 0 0

11101_GBF3_M0264_1.02_CISBP_1.02__shift9 (11101_GBF3_M0264_1.02_CISBP_1.02_) 0.823 0.514 2.320 0.500 0.919 1.317 0.934 48 29 67 18 31 40 33 38.000 34
; oligos_5-7nt_m3 versus 11101_GBF3_M0264_1.02_CISBP_1.02_; m=14/55; ncol2=10; w=10; offset=0; strand=D; shift=9; score= 38; ---------ybAcgTGkmm------ ; cor=0.823; Ncor=0.514; logoDP=2.320; NIcor=0.500; NsEucl=0.919; SSD=1.317; NSW=0.934; rcor=48; rNcor=29; rlogoDP=67; rNIcor=18; rNsEucl=31; rSSD=40; rNSW=33; rank_mean=38.000; match_rank=34 a 0 0 0 0 0 0 0 0 0 20 10 73 4 7 5 7 0 33 33 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 32 27 9 65 18 4 0 6 41 28 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 11 33 10 17 66 1 89 54 14 18 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 37 30 8 14 9 90 4 40 12 21 0 0 0 0 0 0

9053_MA0570_JASPAR_2014__shift7 (9053_MA0570_JASPAR_2014_) 0.758 0.638 6.759 0.647 0.927 2.732 0.915 81 17 7 7 21 81 53 38.143 35
; oligos_5-7nt_m3 versus 9053_MA0570_JASPAR_2014_; m=15/55; ncol2=19; w=16; offset=-2; strand=D; shift=7; score=38.1429; -------GgmCACGTGGCmcrvvvg ; cor=0.758; Ncor=0.638; logoDP=6.759; NIcor=0.647; NsEucl=0.927; SSD=2.732; NSW=0.915; rcor=81; rNcor=17; rlogoDP=7; rNIcor=7; rNsEucl=21; rSSD=81; rNSW=53; rank_mean=38.143; match_rank=35 a 0 0 0 0 0 0 0 0 8 19 0 43 0 0 0 0 0 0 17 6 13 20 12 13 10 c 0 0 0 0 0 0 0 4 2 16 35 0 44 0 0 0 0 44 14 24 6 11 19 12 6 g 0 0 0 0 0 0 0 32 28 0 8 1 0 44 0 44 38 0 9 9 21 11 13 17 23 t 0 0 0 0 0 0 0 8 6 9 1 0 0 0 44 0 6 0 4 5 4 2 0 2 5

411_M00442_TRANSFAC_2012.1__shift5 (411_M00442_TRANSFAC_2012.1_) 0.798 0.518 6.497 0.511 0.920 2.165 0.917 64 28 8 17 28 77 50 38.857 36
; oligos_5-7nt_m3 versus 411_M00442_TRANSFAC_2012.1_; m=16/55; ncol2=17; w=13; offset=-4; strand=D; shift=5; score=38.8571; -----kbggmCACGTGGCmcga--- ; cor=0.798; Ncor=0.518; logoDP=6.497; NIcor=0.511; NsEucl=0.920; SSD=2.165; NSW=0.917; rcor=64; rNcor=28; rlogoDP=8; rNIcor=17; rNsEucl=28; rSSD=77; rNSW=50; rank_mean=38.857; match_rank=36 a 0 0 0 0 0 7 3 0 8 23 0 47 1 0 0 0 0 2 18 8 11 22 0 0 0 c 0 0 0 0 0 11 12 8 5 16 38 0 48 0 0 0 0 47 17 24 10 11 0 0 0 g 0 0 0 0 0 16 20 32 30 0 10 2 0 49 0 49 43 0 8 11 22 10 0 0 0 t 0 0 0 0 0 12 12 9 6 10 1 0 0 0 49 0 6 0 4 4 4 3 0 0 0

9044_MA0561_JASPAR_2014__shift10 (9044_MA0561_JASPAR_2014_) 0.863 0.432 4.889 0.402 0.904 1.176 0.926 29 61 26 44 53 30 37 40.000 37
; oligos_5-7nt_m3 versus 9044_MA0561_JASPAR_2014_; m=17/55; ncol2=8; w=8; offset=1; strand=D; shift=10; score= 40; ----------CACGTGsc------- ; cor=0.863; Ncor=0.432; logoDP=4.889; NIcor=0.402; NsEucl=0.904; SSD=1.176; NSW=0.926; rcor=29; rNcor=61; rlogoDP=26; rNIcor=44; rNsEucl=53; rSSD=30; rNSW=37; rank_mean=40.000; match_rank=37 a 0 0 0 0 0 0 0 0 0 0 0 335 0 49 0 0 0 64 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 335 0 335 0 0 0 99 206 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 286 0 335 183 65 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335 0 53 0 0 0 0 0 0 0 0

349_M00368_TRANSFAC_2012.1__shift8 (349_M00368_TRANSFAC_2012.1_) 0.846 0.448 5.364 0.424 0.904 1.481 0.918 41 54 20 41 52 48 46 43.143 41
; oligos_5-7nt_m3 versus 349_M00368_TRANSFAC_2012.1_; m=18/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=43.1429; --------kmCACGTGkm------- ; cor=0.846; Ncor=0.448; logoDP=5.364; NIcor=0.424; NsEucl=0.904; SSD=1.481; NSW=0.918; rcor=41; rNcor=54; rlogoDP=20; rNIcor=41; rNsEucl=52; rSSD=48; rNSW=46; rank_mean=43.143; match_rank=41 a 0 0 0 0 0 0 0 0 0 3 0 8 0 0 0 0 0 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 4 8 0 8 0 0 0 0 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 0 0 0 0 8 0 8 4 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 3 0 0 0 0 0 8 0 3 1 0 0 0 0 0 0 0

342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028__shift7 (342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028_) 0.854 0.474 7.587 0.464 0.900 2.003 0.900 34 43 2 27 60 73 72 44.429 42
; oligos_5-7nt_m3 versus 342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028_; m=19/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=44.4286; -------GrTGACGTGGCC------ ; cor=0.854; Ncor=0.474; logoDP=7.587; NIcor=0.464; NsEucl=0.900; SSD=2.003; NSW=0.900; rcor=34; rNcor=43; rlogoDP=2; rNIcor=27; rNsEucl=60; rSSD=73; rNSW=72; rank_mean=44.429; match_rank=42 a 0 0 0 0 0 0 0 1 10 0 0 22 0 0 0 0 0 4 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 22 0 0 0 0 18 21 0 0 0 0 0 0 g 0 0 0 0 0 0 0 21 12 0 22 0 0 22 0 22 22 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 22 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0

11535_O22677_ANTMA_M2681_1.02_CISBP_1.02__shift7 (11535_O22677_ANTMA_M2681_1.02_CISBP_1.02_) 0.854 0.474 7.576 0.464 0.900 2.002 0.900 36 44 3 28 59 72 71 44.714 43
; oligos_5-7nt_m3 versus 11535_O22677_ANTMA_M2681_1.02_CISBP_1.02_; m=20/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=44.7143; -------GrTGACGTGGCC------ ; cor=0.854; Ncor=0.474; logoDP=7.576; NIcor=0.464; NsEucl=0.900; SSD=2.002; NSW=0.900; rcor=36; rNcor=44; rlogoDP=3; rNIcor=28; rNsEucl=59; rSSD=72; rNSW=71; rank_mean=44.714; match_rank=43 a 0 0 0 0 0 0 0 5 45 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 0.0000 18 5 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 82 95 0 0 0 0 0 0 g 0 0 0 0 0 0 0 95 55 0.0000 1.0000 0.0000 0.0000 1.0000 0.0000 1.0000 1.0000 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0 0 0 0 0 0 0 0

4993_ABF1_Athamap_20091028__shift9 (4993_ABF1_Athamap_20091028_) 0.855 0.481 6.470 0.465 0.894 1.806 0.900 33 39 9 24 71 67 73 45.143 44
; oligos_5-7nt_m3 versus 4993_ABF1_Athamap_20091028_; m=21/55; ncol2=9; w=9; offset=0; strand=D; shift=9; score=45.1429; ---------ACACGTGGC------- ; cor=0.855; Ncor=0.481; logoDP=6.470; NIcor=0.465; NsEucl=0.894; SSD=1.806; NSW=0.900; rcor=33; rNcor=39; rlogoDP=9; rNIcor=24; rNsEucl=71; rSSD=67; rNSW=73; rank_mean=45.143; match_rank=44 a 0 0 0 0 0 0 0 0 0 20 0 20 0 0 0 0 0 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 20 0 20 0 0 0 0 19 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 20 17 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 3 0 0 0 0 0 0 0 0

7247_PIF3_ArabidopsisPBM_20140210__shift8 (7247_PIF3_ArabidopsisPBM_20140210_) 0.851 0.451 5.538 0.424 0.901 1.601 0.911 38 53 17 40 57 54 60 45.571 45
; oligos_5-7nt_m3 versus 7247_PIF3_ArabidopsisPBM_20140210_; m=22/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=45.5714; --------sCCACGTGGs------- ; cor=0.851; Ncor=0.451; logoDP=5.538; NIcor=0.424; NsEucl=0.901; SSD=1.601; NSW=0.911; rcor=38; rNcor=53; rlogoDP=17; rNIcor=40; rNsEucl=57; rSSD=54; rNSW=60; rank_mean=45.571; match_rank=45 a 0 0 0 0 0 0 0 0 18 0 1 99 0 3 0 0 1 9 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 37 96 99 1 97 0 0 0 3 40 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 37 3 0 0 0 97 1 99 96 35 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 8 1 0 0 3 0 99 1 0 16 0 0 0 0 0 0 0

353_M00372_TRANSFAC_2012.1__rc_shift8 (353_M00372_TRANSFAC_2012.1__rc) 0.827 0.438 3.720 0.357 0.911 1.272 0.929 47 59 45 62 40 36 36 46.429 46
; oligos_5-7nt_m3 versus 353_M00372_TRANSFAC_2012.1__rc; m=23/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=46.4286; --------tybACGTGra------- ; cor=0.827; Ncor=0.438; logoDP=3.720; NIcor=0.357; NsEucl=0.911; SSD=1.272; NSW=0.929; rcor=47; rNcor=59; rlogoDP=45; rNIcor=62; rNsEucl=40; rSSD=36; rNSW=36; rank_mean=46.429; match_rank=46 a 0 0 0 0 0 0 0 0 4 4 0 25 0 0 0 1 6 11 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 10 11 0 25 0 0 6 0 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 5 0 7 0 0 25 0 18 13 3 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 9 8 7 0 0 0 25 0 3 3 0 0 0 0 0 0 0

409_M00440_TRANSFAC_2012.1__shift8 (409_M00440_TRANSFAC_2012.1_) 0.811 0.477 6.256 0.451 0.900 1.990 0.900 53 41 11 29 58 71 69 47.429 47
; oligos_5-7nt_m3 versus 409_M00440_TRANSFAC_2012.1_; m=24/55; ncol2=11; w=10; offset=-1; strand=D; shift=8; score=47.4286; --------khCACGTGvCm------ ; cor=0.811; Ncor=0.477; logoDP=6.256; NIcor=0.451; NsEucl=0.900; SSD=1.990; NSW=0.900; rcor=53; rNcor=41; rlogoDP=11; rNIcor=29; rNsEucl=58; rSSD=71; rNSW=69; rank_mean=47.429; match_rank=47 a 0 0 0 0 0 0 0 0 0 1 0 4 0 0 0 0 1 0 2 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2 4 0 4 0 0 0 1 4 1 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 2 0 0 0 0 4 0 4 2 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0

11890_UNE10_M0158_1.02_CISBP_1.02__rc_shift9 (11890_UNE10_M0158_1.02_CISBP_1.02__rc) 0.853 0.426 4.775 0.374 0.899 1.309 0.918 37 63 29 57 63 39 44 47.429 48
; oligos_5-7nt_m3 versus 11890_UNE10_M0158_1.02_CISBP_1.02__rc; m=25/55; ncol2=8; w=8; offset=0; strand=R; shift=9; score=47.4286; ---------kCACGTGg-------- ; cor=0.853; Ncor=0.426; logoDP=4.775; NIcor=0.374; NsEucl=0.899; SSD=1.309; NSW=0.918; rcor=37; rNcor=63; rlogoDP=29; rNIcor=57; rNsEucl=63; rSSD=39; rNSW=44; rank_mean=47.429; match_rank=48 a 0 0 0 0 0 0 0 0 0 13 0 100 0 0 0 0 21 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 7 100 0 100 0 0 0 7 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 53 0 0 0 100 0 100 51 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 27 0 0 0 0 100 0 21 0 0 0 0 0 0 0 0

372_M00400_TRANSFAC_2012.1__shift0 (372_M00400_TRANSFAC_2012.1_) 0.766 0.490 7.955 0.471 0.913 3.848 0.880 77 36 1 22 36 82 80 47.714 50
; oligos_5-7nt_m3 versus 372_M00400_TRANSFAC_2012.1_; m=26/55; ncol2=25; w=16; offset=-9; strand=D; shift=0; score=47.7143; hhkCryybgCCACGTGGCCvCGACA ; cor=0.766; Ncor=0.490; logoDP=7.955; NIcor=0.471; NsEucl=0.913; SSD=3.848; NSW=0.880; rcor=77; rNcor=36; rlogoDP=1; rNIcor=22; rNsEucl=36; rSSD=82; rNSW=80; rank_mean=47.714; match_rank=50 a 3 3 2 0 4 1 0 0 3 0 0 13 0 0 0 0 0 0 2 4 2 1 10 0 10 c 5 3 1 6 2 4 2 3 1 13 13 0 13 0 0 0 0 5 8 4 10 1 2 12 0 g 1 2 6 0 6 3 0 6 7 0 0 0 0 13 0 13 13 0 0 3 1 9 1 1 3 t 3 4 4 0 1 5 2 3 2 0 0 0 0 0 13 0 0 0 1 1 0 0 0 0 0

351_M00370_TRANSFAC_2012.1__shift8 (351_M00370_TRANSFAC_2012.1_) 0.803 0.425 4.017 0.400 0.906 1.443 0.920 58 64 39 45 50 46 42 49.143 53
; oligos_5-7nt_m3 versus 351_M00370_TRANSFAC_2012.1_; m=27/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=49.1429; --------khsACGTsdm------- ; cor=0.803; Ncor=0.425; logoDP=4.017; NIcor=0.400; NsEucl=0.906; SSD=1.443; NSW=0.920; rcor=58; rNcor=64; rlogoDP=39; rNIcor=45; rNsEucl=50; rSSD=46; rNSW=42; rank_mean=49.143; match_rank=53 a 0 0 0 0 0 0 0 0 1 2 0 10 0 0 0 0 3 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 3 6 0 10 0 0 4 0 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 0 4 0 0 10 0 6 3 1 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 3 0 0 0 0 10 0 2 1 0 0 0 0 0 0 0

11736_SPT_M0162_1.02_CISBP_1.02__rc_shift9 (11736_SPT_M0162_1.02_CISBP_1.02__rc) 0.822 0.462 0.610 -0.034 0.912 1.261 0.930 49 47 73 72 38 34 34 49.571 55
; oligos_5-7nt_m3 versus 11736_SPT_M0162_1.02_CISBP_1.02__rc; m=28/55; ncol2=9; w=9; offset=0; strand=R; shift=9; score=49.5714; ---------gCACGTGsg------- ; cor=0.822; Ncor=0.462; logoDP=0.610; NIcor=-0.034; NsEucl=0.912; SSD=1.261; NSW=0.930; rcor=49; rNcor=47; rlogoDP=73; rNIcor=72; rNsEucl=38; rSSD=34; rNSW=34; rank_mean=49.571; match_rank=55 a 0 0 0 0 0 0 0 0 0 24 8 99 0 8 2 4 13 16 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 24 72 0 91 0 10 0 26 21 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 30 12 1 0 91 0 96 56 43 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 22 8 0 9 1 88 0 5 20 0 0 0 0 0 0 0

10569_0300010311_M0363_1.02_CISBP_1.02__shift8 (10569_0300010311_M0363_1.02_CISBP_1.02_) 0.785 0.462 4.547 0.440 0.906 1.756 0.912 69 48 33 32 48 64 57 50.143 56
; oligos_5-7nt_m3 versus 10569_0300010311_M0363_1.02_CISBP_1.02_; m=29/55; ncol2=11; w=10; offset=-1; strand=D; shift=8; score=50.1429; --------rtsACGTGgca------ ; cor=0.785; Ncor=0.462; logoDP=4.547; NIcor=0.440; NsEucl=0.906; SSD=1.756; NSW=0.912; rcor=69; rNcor=48; rlogoDP=33; rNIcor=32; rNsEucl=48; rSSD=64; rNSW=57; rank_mean=50.143; match_rank=56 a 0 0 0 0 0 0 0 0 29 23 3 100 0 0 0 0 14 19 34 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 21 13 38 0 100 0 0 10 4 41 22 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 5 56 0 0 100 0 90 59 20 22 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 21 59 3 0 0 0 100 0 23 20 22 0 0 0 0 0 0

1418_M01818_TRANSFAC_2012.1__shift10 (1418_M01818_TRANSFAC_2012.1_) 0.783 0.489 6.293 0.497 0.898 2.066 0.897 72 38 10 20 64 75 76 50.714 57
; oligos_5-7nt_m3 versus 1418_M01818_TRANSFAC_2012.1_; m=30/55; ncol2=10; w=10; offset=1; strand=D; shift=10; score=50.7143; ----------sACGTGGhvb----- ; cor=0.783; Ncor=0.489; logoDP=6.293; NIcor=0.497; NsEucl=0.898; SSD=2.066; NSW=0.897; rcor=72; rNcor=38; rlogoDP=10; rNIcor=20; rNsEucl=64; rSSD=75; rNSW=76; rank_mean=50.714; match_rank=57 a 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 1 2 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 2 0 4 0 0 0 0 2 1 2 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 2 0 0 4 0 4 4 0 1 1 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 1 0 1 0 0 0 0 0

1226_M01585_TRANSFAC_2012.1__shift8 (1226_M01585_TRANSFAC_2012.1_) 0.801 0.424 3.927 0.398 0.905 1.476 0.918 60 65 42 47 51 47 45 51.000 58
; oligos_5-7nt_m3 versus 1226_M01585_TRANSFAC_2012.1_; m=31/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score= 51; --------grCACGTGrs------- ; cor=0.801; Ncor=0.424; logoDP=3.927; NIcor=0.398; NsEucl=0.905; SSD=1.476; NSW=0.918; rcor=60; rNcor=65; rlogoDP=42; rNIcor=47; rNsEucl=51; rSSD=47; rNSW=45; rank_mean=51.000; match_rank=58 a 0 0 0 0 0 0 0 0 19 28 3 87 0 2 3 1 30 23 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 14 24 99 0 100 0 0 2 4 29 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 59 36 2 17 1 104 0 101 50 31 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 14 18 2 2 5 0 103 2 22 23 0 0 0 0 0 0 0

761_M01065_TRANSFAC_2012.1__shift6 (761_M01065_TRANSFAC_2012.1_) 0.771 0.446 5.039 0.428 0.910 1.969 0.910 75 56 24 39 42 70 61 52.429 59
; oligos_5-7nt_m3 versus 761_M01065_TRANSFAC_2012.1_; m=32/55; ncol2=14; w=11; offset=-3; strand=D; shift=6; score=52.4286; ------kkctkACGTGKsvg----- ; cor=0.771; Ncor=0.446; logoDP=5.039; NIcor=0.428; NsEucl=0.910; SSD=1.969; NSW=0.910; rcor=75; rNcor=56; rlogoDP=24; rNIcor=39; rNsEucl=42; rSSD=70; rNSW=61; rank_mean=52.429; match_rank=59 a 0 0 0 0 0 0 2 1 4 4 0 17 0 0 0 1 0 3 6 4 0 0 0 0 0 c 0 0 0 0 0 0 0 1 5 2 4 0 17 0 0 0 0 5 5 3 0 0 0 0 0 g 0 0 0 0 0 0 7 10 4 2 8 0 0 17 0 16 12 6 5 6 0 0 0 0 0 t 0 0 0 0 0 0 8 5 4 9 5 0 0 0 17 0 5 3 1 4 0 0 0 0 0

12238_gw1.270.82.1_M0252_1.02_CISBP_1.02__rc_shift9 (12238_gw1.270.82.1_M0252_1.02_CISBP_1.02__rc) 0.837 0.419 4.641 0.369 0.895 1.404 0.912 44 67 32 58 70 44 56 53.000 60
; oligos_5-7nt_m3 versus 12238_gw1.270.82.1_M0252_1.02_CISBP_1.02__rc; m=33/55; ncol2=8; w=8; offset=0; strand=R; shift=9; score= 53; ---------gCACGTGg-------- ; cor=0.837; Ncor=0.419; logoDP=4.641; NIcor=0.369; NsEucl=0.895; SSD=1.404; NSW=0.912; rcor=44; rNcor=67; rlogoDP=32; rNIcor=58; rNsEucl=70; rSSD=44; rNSW=56; rank_mean=53.000; match_rank=60 a 0 0 0 0 0 0 0 0 0 14 0 100 0 0 0 0 23 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 8 100 0 95 0 0 0 15 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 64 0 0 0 100 0 100 46 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 14 0 0 5 0 100 0 16 0 0 0 0 0 0 0 0

12075_bHLH34_M0157_1.02_CISBP_1.02__shift9 (12075_bHLH34_M0157_1.02_CISBP_1.02_) 0.818 0.409 4.115 0.390 0.896 1.377 0.914 50 73 37 49 67 43 54 53.286 61
; oligos_5-7nt_m3 versus 12075_bHLH34_M0157_1.02_CISBP_1.02_; m=34/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=53.2857; ---------gCACGTGk-------- ; cor=0.818; Ncor=0.409; logoDP=4.115; NIcor=0.390; NsEucl=0.896; SSD=1.377; NSW=0.914; rcor=50; rNcor=73; rlogoDP=37; rNIcor=49; rNsEucl=67; rSSD=43; rNSW=54; rank_mean=53.286; match_rank=61 a 0 0 0 0 0 0 0 0 0 16 0 73 0 0 0 0 10 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 4 100 0 85 0 0 0 14 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 65 0 24 0 100 0 100 47 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 15 0 3 15 0 100 0 29 0 0 0 0 0 0 0 0

659_M00942_TRANSFAC_2012.1__shift8 (659_M00942_TRANSFAC_2012.1_) 0.814 0.431 5.414 0.402 0.895 1.772 0.902 52 62 18 43 69 65 67 53.714 62
; oligos_5-7nt_m3 versus 659_M00942_TRANSFAC_2012.1_; m=35/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=53.7143; --------kmCACGTGkm------- ; cor=0.814; Ncor=0.431; logoDP=5.414; NIcor=0.402; NsEucl=0.895; SSD=1.772; NSW=0.902; rcor=52; rNcor=62; rlogoDP=18; rNIcor=43; rNsEucl=69; rSSD=65; rNSW=67; rank_mean=53.714; match_rank=62 a 0 0 0 0 0 0 0 0 0 2 0 5 0 0 0 0 0 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2 5 0 5 0 0 0 0 2 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 2 0 0 0 0 5 0 5 2 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 0 0 0 0 0 5 0 2 0 0 0 0 0 0 0 0

352_M00371_TRANSFAC_2012.1__shift8 (352_M00371_TRANSFAC_2012.1_) 0.790 0.418 3.876 0.389 0.903 1.511 0.916 67 68 43 50 54 50 51 54.714 63
; oligos_5-7nt_m3 versus 352_M00371_TRANSFAC_2012.1_; m=36/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=54.7143; --------shsACGTsds------- ; cor=0.790; Ncor=0.418; logoDP=3.876; NIcor=0.389; NsEucl=0.903; SSD=1.511; NSW=0.916; rcor=67; rNcor=68; rlogoDP=43; rNIcor=50; rNsEucl=54; rSSD=50; rNSW=51; rank_mean=54.714; match_rank=63 a 0 0 0 0 0 0 0 0 2 3 0 14 0 0 0 1 4 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 4 9 0 14 0 0 4 0 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 0 4 0 0 14 0 9 4 3 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 4 1 0 0 0 14 0 3 2 0 0 0 0 0 0 0

11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02__shift9 (11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02_) 0.830 0.415 5.100 0.396 0.888 1.596 0.900 45 70 22 48 80 53 70 55.429 64
; oligos_5-7nt_m3 versus 11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02_; m=37/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=55.4286; ---------mCACGTGk-------- ; cor=0.830; Ncor=0.415; logoDP=5.100; NIcor=0.396; NsEucl=0.888; SSD=1.596; NSW=0.900; rcor=45; rNcor=70; rlogoDP=22; rNIcor=48; rNsEucl=80; rSSD=53; rNSW=70; rank_mean=55.429; match_rank=64 a 0 0 0 0 0 0 0 0 0 67 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 33 100 0 100 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 100 50 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 50 0 0 0 0 0 0 0 0

9051_MA0568_JASPAR_2014__shift9 (9051_MA0568_JASPAR_2014_) 0.804 0.402 3.364 0.381 0.899 1.308 0.918 57 82 53 53 62 38 43 55.429 65
; oligos_5-7nt_m3 versus 9051_MA0568_JASPAR_2014_; m=38/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=55.4286; ---------vCACGTGb-------- ; cor=0.804; Ncor=0.402; logoDP=3.364; NIcor=0.381; NsEucl=0.899; SSD=1.308; NSW=0.918; rcor=57; rNcor=82; rlogoDP=53; rNIcor=53; rNsEucl=62; rSSD=38; rNSW=43; rank_mean=55.429; match_rank=65 a 0 0 0 0 0 0 0 0 0 25 10 97 0 16 1 0 7 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 28 89 0 84 0 2 0 40 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 40 0 2 0 84 0 89 28 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 7 0 1 16 0 97 10 25 0 0 0 0 0 0 0 0

340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028__shift7 (340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028_) 0.802 0.445 7.187 0.430 0.889 2.479 0.876 59 57 4 36 77 79 81 56.143 66
; oligos_5-7nt_m3 versus 340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028_; m=39/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=56.1429; -------GATGACGTGGCm------ ; cor=0.802; Ncor=0.445; logoDP=7.187; NIcor=0.430; NsEucl=0.889; SSD=2.479; NSW=0.876; rcor=59; rNcor=57; rlogoDP=4; rNIcor=36; rNsEucl=77; rSSD=79; rNSW=81; rank_mean=56.143; match_rank=66 a 0 0 0 0 0 0 0 0 14 0 0 18 0 0 0 0 0 0 10 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 18 8 0 0 0 0 0 0 g 0 0 0 0 0 0 0 18 4 0 18 0 0 18 0 18 17 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 18 0 0 0 0 18 0 1 0 0 0 0 0 0 0 0

8766_MA0097_JASPAR_2014__shift7 (8766_MA0097_JASPAR_2014_) 0.806 0.448 6.218 0.423 0.894 2.247 0.888 56 55 12 42 72 78 78 56.143 67
; oligos_5-7nt_m3 versus 8766_MA0097_JASPAR_2014_; m=40/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=56.1429; -------GrTGACGTGkmC------ ; cor=0.806; Ncor=0.448; logoDP=6.218; NIcor=0.423; NsEucl=0.894; SSD=2.247; NSW=0.888; rcor=56; rNcor=55; rlogoDP=12; rNIcor=42; rNsEucl=72; rSSD=78; rNSW=78; rank_mean=56.143; match_rank=67 a 0 0 0 0 0 0 0 1 17 0 0 33 0 0 0 0 1 11 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 1 0 20 32 0 0 0 0 0 0 g 0 0 0 0 0 0 0 31 16 0 33 0 0 33 0 32 22 1 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 1 0 33 0 0 0 0 33 0 10 1 0 0 0 0 0 0 0

11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02__rc_shift8 (11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02__rc) 0.800 0.471 0.741 -0.067 0.909 1.655 0.917 61 45 72 73 44 58 49 57.429 68
; oligos_5-7nt_m3 versus 11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02__rc; m=41/55; ncol2=11; w=10; offset=-1; strand=R; shift=8; score=57.4286; --------rwCACGTGgma------ ; cor=0.800; Ncor=0.471; logoDP=0.741; NIcor=-0.067; NsEucl=0.909; SSD=1.655; NSW=0.917; rcor=61; rNcor=45; rlogoDP=72; rNIcor=73; rNsEucl=44; rSSD=58; rNSW=49; rank_mean=57.429; match_rank=68 a 0 0 0 0 0 0 0 0 29 47 3 100 0 0 0 0 12 25 33 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 21 19 72 0 100 0 0 7 4 39 22 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 7 22 0 0 100 0 93 64 18 23 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 21 27 3 0 0 0 100 0 20 18 22 0 0 0 0 0 0

11534_O22676_ANTMA_M2679_1.02_CISBP_1.02__shift7 (11534_O22676_ANTMA_M2679_1.02_CISBP_1.02_) 0.800 0.445 7.169 0.430 0.888 2.487 0.876 62 58 5 37 79 80 82 57.571 69
; oligos_5-7nt_m3 versus 11534_O22676_ANTMA_M2679_1.02_CISBP_1.02_; m=42/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=57.5714; -------GATGACGTGGCm------ ; cor=0.800; Ncor=0.445; logoDP=7.169; NIcor=0.430; NsEucl=0.888; SSD=2.487; NSW=0.876; rcor=62; rNcor=58; rlogoDP=5; rNIcor=37; rNsEucl=79; rSSD=80; rNSW=82; rank_mean=57.571; match_rank=69 a 0 0 0 0 0 0 0 0.0000 78 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 0 0.0000 56 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0.0000 0 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0 1.0000 44 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1.0000 22 0.0000 1.0000 0.0000 0.0000 1.0000 0.0000 1.0000 94 0.0000 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0.0000 0 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 6 0.0000 0 0 0 0 0 0 0

10590_ABI5_M0261_1.02_CISBP_1.02__rc_shift9 (10590_ABI5_M0261_1.02_CISBP_1.02__rc) 0.789 0.493 2.588 0.105 0.906 1.774 0.911 68 34 60 69 49 66 59 57.857 70
; oligos_5-7nt_m3 versus 10590_ABI5_M0261_1.02_CISBP_1.02__rc; m=43/55; ncol2=10; w=10; offset=0; strand=R; shift=9; score=57.8571; ---------mCACGTGkcv------ ; cor=0.789; Ncor=0.493; logoDP=2.588; NIcor=0.105; NsEucl=0.906; SSD=1.774; NSW=0.911; rcor=68; rNcor=34; rlogoDP=60; rNIcor=69; rNsEucl=49; rSSD=66; rNSW=59; rank_mean=57.857; match_rank=70 a 0 0 0 0 0 0 0 0 0 34 7 100 0 0 0 0 8 17 31 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 34 71 0 100 0 0 8 0 66 26 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 16 7 0 0 100 0 92 31 8 26 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 16 15 0 0 0 100 0 61 9 17 0 0 0 0 0 0

356_M00375_TRANSFAC_2012.1__rc_shift8 (356_M00375_TRANSFAC_2012.1__rc) 0.785 0.415 3.958 0.365 0.901 1.591 0.912 70 69 41 59 56 52 58 57.857 71
; oligos_5-7nt_m3 versus 356_M00375_TRANSFAC_2012.1__rc; m=44/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=57.8571; --------sysACGTsds------- ; cor=0.785; Ncor=0.415; logoDP=3.958; NIcor=0.365; NsEucl=0.901; SSD=1.591; NSW=0.912; rcor=70; rNcor=69; rlogoDP=41; rNIcor=59; rNsEucl=56; rSSD=52; rNSW=58; rank_mean=57.857; match_rank=71 a 0 0 0 0 0 0 0 0 1 1 0 10 0 0 0 1 3 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 2 2 4 0 10 0 0 4 0 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 5 0 5 0 0 10 0 5 3 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 5 1 0 0 0 10 0 2 1 0 0 0 0 0 0 0

9045_MA0562_JASPAR_2014__shift9 (9045_MA0562_JASPAR_2014_) 0.811 0.405 4.529 0.385 0.889 1.579 0.901 54 76 34 52 76 51 68 58.714 72
; oligos_5-7nt_m3 versus 9045_MA0562_JASPAR_2014_; m=45/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=58.7143; ---------YCACRTGs-------- ; cor=0.811; Ncor=0.405; logoDP=4.529; NIcor=0.385; NsEucl=0.889; SSD=1.579; NSW=0.901; rcor=54; rNcor=76; rlogoDP=34; rNIcor=52; rNsEucl=76; rSSD=51; rNSW=68; rank_mean=58.714; match_rank=72 a 0 0 0 0 0 0 0 0 0 0 0 286 0 91 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 78 286 0 286 0 0 0 95 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 195 0 286 161 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 208 0 0 0 0 286 0 30 0 0 0 0 0 0 0 0

10574_1500010105_M0364_1.02_CISBP_1.02__rc_shift10 (10574_1500010105_M0364_1.02_CISBP_1.02__rc) 0.799 0.499 0.463 -0.183 0.907 1.732 0.913 63 31 75 82 47 61 55 59.143 73
; oligos_5-7nt_m3 versus 10574_1500010105_M0364_1.02_CISBP_1.02__rc; m=46/55; ncol2=10; w=10; offset=1; strand=R; shift=10; score=59.1429; ----------CACGTGGCrw----- ; cor=0.799; Ncor=0.499; logoDP=0.463; NIcor=-0.183; NsEucl=0.907; SSD=1.732; NSW=0.913; rcor=63; rNcor=31; rlogoDP=75; rNIcor=82; rNsEucl=47; rSSD=61; rNSW=55; rank_mean=59.143; match_rank=73 a 0 0 0 0 0 0 0 0 0 0 7 93 2 0 0 2 0 8 40 29 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 79 0 84 6 0 0 0 79 6 24 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 9 6 10 91 0 92 79 1 46 22 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 5 1 4 3 100 6 21 12 8 25 0 0 0 0 0

9043_MA0560_JASPAR_2014__rc_shift9 (9043_MA0560_JASPAR_2014__rc) 0.784 0.490 2.910 0.076 0.902 1.904 0.905 71 37 58 70 55 69 64 60.571 74
; oligos_5-7nt_m3 versus 9043_MA0560_JASPAR_2014__rc; m=47/55; ncol2=10; w=10; offset=0; strand=R; shift=9; score=60.5714; ---------yCACGTGGch------ ; cor=0.784; Ncor=0.490; logoDP=2.910; NIcor=0.076; NsEucl=0.902; SSD=1.904; NSW=0.905; rcor=71; rNcor=37; rlogoDP=58; rNIcor=70; rNsEucl=55; rSSD=69; rNSW=64; rank_mean=60.571; match_rank=74 a 0 0 0 0 0 0 0 0 0 98 0 527 0 118 0 0 15 116 143 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 137 527 0 527 0 0 0 94 222 148 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 33 0 0 0 409 0 527 399 131 26 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 259 0 0 0 0 527 0 19 58 210 0 0 0 0 0 0

10633_AT1G01260_M0150_1.02_CISBP_1.02__shift9 (10633_AT1G01260_M0150_1.02_CISBP_1.02_) 0.809 0.404 4.820 0.380 0.887 1.628 0.898 55 78 28 55 81 55 74 60.857 75
; oligos_5-7nt_m3 versus 10633_AT1G01260_M0150_1.02_CISBP_1.02_; m=48/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=60.8571; ---------sCACGTGk-------- ; cor=0.809; Ncor=0.404; logoDP=4.820; NIcor=0.380; NsEucl=0.887; SSD=1.628; NSW=0.898; rcor=55; rNcor=78; rlogoDP=28; rNIcor=55; rNsEucl=81; rSSD=55; rNSW=74; rank_mean=60.857; match_rank=75 a 0 0 0 0 0 0 0 0 0 6 0 100 0 0 0 0 13 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 28 100 0 100 0 0 0 7 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 44 0 0 0 100 0 100 27 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 22 0 0 0 0 100 0 53 0 0 0 0 0 0 0 0

662_M00945_TRANSFAC_2012.1__shift8 (662_M00945_TRANSFAC_2012.1_) 0.770 0.407 3.865 0.381 0.899 1.653 0.908 76 74 44 54 61 57 62 61.143 76
; oligos_5-7nt_m3 versus 662_M00945_TRANSFAC_2012.1_; m=49/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=61.1429; --------vhsACGTsdb------- ; cor=0.770; Ncor=0.407; logoDP=3.865; NIcor=0.381; NsEucl=0.899; SSD=1.653; NSW=0.908; rcor=76; rNcor=74; rlogoDP=44; rNIcor=54; rNsEucl=61; rSSD=57; rNSW=62; rank_mean=61.143; match_rank=76 a 0 0 0 0 0 0 0 0 3 3 0 14 0 0 0 1 4 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 4 9 0 14 0 0 4 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 3 0 4 0 0 14 0 9 4 3 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 4 1 0 0 0 14 0 3 3 0 0 0 0 0 0 0

604_M00788_TRANSFAC_2012.1__shift8 (604_M00788_TRANSFAC_2012.1_) 0.779 0.412 6.115 0.432 0.886 2.121 0.882 74 72 15 35 82 76 79 61.857 77
; oligos_5-7nt_m3 versus 604_M00788_TRANSFAC_2012.1_; m=50/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=61.8571; --------wwcACGTGGW------- ; cor=0.779; Ncor=0.412; logoDP=6.115; NIcor=0.432; NsEucl=0.886; SSD=2.121; NSW=0.882; rcor=74; rNcor=72; rlogoDP=15; rNIcor=35; rNsEucl=82; rSSD=76; rNSW=79; rank_mean=61.857; match_rank=77 a 0 0 0 0 0 0 0 0 4 8 0 13 0 0 0 0 0 3 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 0 8 0 13 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 2 0 3 0 0 13 0 13 4 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 5 4 2 0 0 0 13 0 0 1 0 0 0 0 0 0 0

11589_PIL5_M0156_1.02_CISBP_1.02__shift8 (11589_PIL5_M0156_1.02_CISBP_1.02_) 0.763 0.404 3.626 0.375 0.896 1.737 0.904 78 79 47 56 66 62 65 64.714 78
; oligos_5-7nt_m3 versus 11589_PIL5_M0156_1.02_CISBP_1.02_; m=51/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=64.7143; --------rbCACGTGvy------- ; cor=0.763; Ncor=0.404; logoDP=3.626; NIcor=0.375; NsEucl=0.896; SSD=1.737; NSW=0.904; rcor=78; rNcor=79; rlogoDP=47; rNIcor=56; rNsEucl=66; rSSD=62; rNSW=65; rank_mean=64.714; match_rank=78 a 0 0 0 0 0 0 0 0 29 14 3 96 0 9 1 2 30 19 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 22 28 94 0 91 0 3 1 28 30 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 28 1 2 0 91 0 94 28 22 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 20 30 2 2 9 0 96 3 14 29 0 0 0 0 0 0 0

5039_TGA1a_Athamap_20091028__rc_shift8 (5039_TGA1a_Athamap_20091028__rc) 0.762 0.403 3.960 0.359 0.896 1.754 0.903 79 80 40 61 68 63 66 65.286 79
; oligos_5-7nt_m3 versus 5039_TGA1a_Athamap_20091028__rc; m=52/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=65.2857; --------swsACGTSds------- ; cor=0.762; Ncor=0.403; logoDP=3.960; NIcor=0.359; NsEucl=0.896; SSD=1.754; NSW=0.903; rcor=79; rNcor=80; rlogoDP=40; rNIcor=61; rNsEucl=68; rSSD=63; rNSW=66; rank_mean=65.286; match_rank=79 a 0 0 0 0 0 0 0 0 1 3 0 11 0 0 0 0 4 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 5 2 7 0 11 0 0 3 1 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 1 4 0 0 11 0 8 3 5 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 5 0 0 0 0 11 0 3 1 0 0 0 0 0 0 0

7290_bZIP60_2_ArabidopsisPBM_20140210__rc_shift8 (7290_bZIP60_2_ArabidopsisPBM_20140210__rc) 0.780 0.413 2.388 0.241 0.898 1.701 0.905 73 71 64 63 65 59 63 65.429 80
; oligos_5-7nt_m3 versus 7290_bZIP60_2_ArabidopsisPBM_20140210__rc; m=53/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=65.4286; --------rTGACGTGgc------- ; cor=0.780; Ncor=0.413; logoDP=2.388; NIcor=0.241; NsEucl=0.898; SSD=1.701; NSW=0.905; rcor=73; rNcor=71; rlogoDP=64; rNIcor=63; rNsEucl=65; rSSD=59; rNSW=63; rank_mean=65.429; match_rank=80 a 0 0 0 0 0 0 0 0 40 2 3 92 2 5 3 4 7 18 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 11 4 4 2 88 3 3 8 9 53 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 43 3 88 3 3 90 3 83 64 10 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 91 5 3 7 2 91 5 20 19 0 0 0 0 0 0 0

663_M00946_TRANSFAC_2012.1__shift8 (663_M00946_TRANSFAC_2012.1_) 0.761 0.403 4.345 0.387 0.893 1.838 0.898 80 81 35 51 73 68 75 66.143 81
; oligos_5-7nt_m3 versus 663_M00946_TRANSFAC_2012.1_; m=54/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=66.1429; --------RhsACGTsdY------- ; cor=0.761; Ncor=0.403; logoDP=4.345; NIcor=0.387; NsEucl=0.893; SSD=1.838; NSW=0.898; rcor=80; rNcor=81; rlogoDP=35; rNIcor=51; rNsEucl=73; rSSD=68; rNSW=75; rank_mean=66.143; match_rank=81 a 0 0 0 0 0 0 0 0 1 1 0 6 0 0 0 0 2 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 1 3 0 6 0 0 3 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 3 0 3 0 0 6 0 3 1 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 2 0 0 0 0 6 0 1 1 0 0 0 0 0 0 0

4997_ABI5_Athamap_20091028__rc_shift9 (4997_ABI5_Athamap_20091028__rc) 0.754 0.424 0.479 -0.128 0.888 2.014 0.888 82 66 74 79 78 74 77 75.714 82
; oligos_5-7nt_m3 versus 4997_ABI5_Athamap_20091028__rc; m=55/55; ncol2=9; w=9; offset=0; strand=R; shift=9; score=75.7143; ---------YvACGTrKM------- ; cor=0.754; Ncor=0.424; logoDP=0.479; NIcor=-0.128; NsEucl=0.888; SSD=2.014; NSW=0.888; rcor=82; rNcor=66; rlogoDP=74; rNIcor=79; rNsEucl=78; rSSD=74; rNSW=77; rank_mean=75.714; match_rank=82 a 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 2 0 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 3 2 0 4 0 0 0 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 1 0 0 4 0 2 1 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 1 0 0 0 0 4 0 3 0 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m3_shift9 (oligos_5-7nt_m3)																	; oligos_5-7nt_m3; m=0 (reference); ncol1=16; shift=9; ncol=25; ---------sbACGTGGCCACawsg ; Alignment reference a 0 0 0 0 0 0 0 0 0 12 11 43 3 5 0 0 2 6 1 45 4 42 21 10 11 c 0 0 0 0 0 0 0 0 0 25 20 11 56 2 6 2 1 55 55 4 49 13 10 20 14 g 0 0 0 0 0 0 0 0 0 16 16 4 2 51 3 58 58 2 5 8 4 6 12 21 25 t 0 0 0 0 0 0 0 0 0 10 16 5 2 5 54 3 2 0 2 6 6 2 20 12 13
348_M00367_TRANSFAC_2012.1__shift8 (348_M00367_TRANSFAC_2012.1_)	0.908	0.480	4.682	0.464	0.932	0.750	0.958	10	40	31	25	11	10	11	19.714	8	; oligos_5-7nt_m3 versus 348_M00367_TRANSFAC_2012.1_; m=1/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=19.7143; --------gmsACGTSgC------- ; cor=0.908; Ncor=0.480; logoDP=4.682; NIcor=0.464; NsEucl=0.932; SSD=0.750; NSW=0.958; rcor=10; rNcor=40; rlogoDP=31; rNIcor=25; rNsEucl=11; rSSD=10; rNSW=11; rank_mean=19.714; match_rank=8 a 0 0 0 0 0 0 0 0 2 4 0 17 0 0 0 0 3 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 7 11 0 17 0 0 4 0 10 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 9 1 5 0 0 17 0 12 8 1 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 3 1 0 0 0 17 0 3 0 0 0 0 0 0 0 0
12076_bZIP68_M0255_1.02_CISBP_1.02__shift9 (12076_bZIP68_M0255_1.02_CISBP_1.02_)	0.906	0.510	2.513	0.497	0.936	0.673	0.963	11	30	62	19	8	7	7	20.571	10	; oligos_5-7nt_m3 versus 12076_bZIP68_M0255_1.02_CISBP_1.02_; m=2/55; ncol2=9; w=9; offset=0; strand=D; shift=9; score=20.5714; ---------hsacgTGkm------- ; cor=0.906; Ncor=0.510; logoDP=2.513; NIcor=0.497; NsEucl=0.936; SSD=0.673; NSW=0.963; rcor=11; rNcor=30; rlogoDP=62; rNIcor=19; rNsEucl=8; rSSD=7; rNSW=7; rank_mean=20.571; match_rank=10 a 0 0 0 0 0 0 0 0 0 25 19 62 7 12 3 3 0 29 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 34 33 13 65 16 6 0 7 48 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 12 26 14 15 63 0 95 55 13 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 29 22 11 13 9 91 2 38 10 0 0 0 0 0 0 0
1225_M01584_TRANSFAC_2012.1__shift9 (1225_M01584_TRANSFAC_2012.1_)	0.875	0.547	4.835	0.537	0.928	1.027	0.949	22	26	27	15	20	24	21	22.143	11	; oligos_5-7nt_m3 versus 1225_M01584_TRANSFAC_2012.1_; m=3/55; ncol2=10; w=10; offset=0; strand=D; shift=9; score=22.1429; ---------wsACGTGGCg------ ; cor=0.875; Ncor=0.547; logoDP=4.835; NIcor=0.537; NsEucl=0.928; SSD=1.027; NSW=0.949; rcor=22; rNcor=26; rlogoDP=27; rNIcor=15; rNsEucl=20; rSSD=24; rNSW=21; rank_mean=22.143; match_rank=11 a 0 0 0 0 0 0 0 0 0 30 10 97 3 0 1 7 1 21 18 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 17 32 0 100 1 0 2 0 73 23 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 11 42 6 2 106 0 96 95 3 43 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 49 23 4 2 0 106 2 11 10 23 0 0 0 0 0 0
347_M00366_TRANSFAC_2012.1__rc_shift8 (347_M00366_TRANSFAC_2012.1__rc)	0.928	0.492	3.643	0.363	0.936	0.665	0.963	5	35	46	60	7	6	5	23.429	15	; oligos_5-7nt_m3 versus 347_M00366_TRANSFAC_2012.1__rc; m=4/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=23.4286; --------bhCACGTGKC------- ; cor=0.928; Ncor=0.492; logoDP=3.643; NIcor=0.363; NsEucl=0.936; SSD=0.665; NSW=0.963; rcor=5; rNcor=35; rlogoDP=46; rNIcor=60; rNsEucl=7; rSSD=6; rNSW=5; rank_mean=23.429; match_rank=15 a 0 0 0 0 0 0 0 0 2 8 1 24 0 0 0 0 0 4 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 6 9 17 0 22 1 0 0 1 18 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 9 0 5 0 1 23 0 24 16 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 6 1 0 0 0 24 0 6 1 0 0 0 0 0 0 0
8789_MA0128_JASPAR_2014__shift9 (8789_MA0128_JASPAR_2014_)	0.910	0.455	5.091	0.464	0.920	0.828	0.948	9	52	23	26	30	15	22	25.286	17	; oligos_5-7nt_m3 versus 8789_MA0128_JASPAR_2014_; m=5/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=25.2857; ---------WsACGTGG-------- ; cor=0.910; Ncor=0.455; logoDP=5.091; NIcor=0.464; NsEucl=0.920; SSD=0.828; NSW=0.948; rcor=9; rNcor=52; rlogoDP=23; rNIcor=26; rNsEucl=30; rSSD=15; rNSW=22; rank_mean=25.286; match_rank=17 a 0 0 0 0 0 0 0 0 0 9 1 13 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 7 0 12 0 0 1 1 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 4 0 0 13 0 12 12 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 4 1 0 1 0 13 0 0 0 0 0 0 0 0 0 0
1436_M01838_TRANSFAC_2012.1__shift10 (1436_M01838_TRANSFAC_2012.1_)	0.877	0.494	6.880	0.484	0.911	1.271	0.929	19	33	6	21	39	35	35	26.857	18	; oligos_5-7nt_m3 versus 1436_M01838_TRANSFAC_2012.1_; m=6/55; ncol2=9; w=9; offset=1; strand=D; shift=10; score=26.8571; ----------bACGTGGCM------ ; cor=0.877; Ncor=0.494; logoDP=6.880; NIcor=0.484; NsEucl=0.911; SSD=1.271; NSW=0.929; rcor=19; rNcor=33; rlogoDP=6; rNIcor=21; rNsEucl=39; rSSD=35; rNSW=35; rank_mean=26.857; match_rank=18 a 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 6 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 3 0 8 0 0 0 0 8 2 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 3 0 0 8 0 8 7 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 2 0 0 0 8 0 1 0 0 0 0 0 0 0 0
11099_GBF1_M0268_1.02_CISBP_1.02__shift9 (11099_GBF1_M0268_1.02_CISBP_1.02_)	0.854	0.534	3.312	0.521	0.926	1.086	0.946	35	27	54	16	23	26	25	29.429	19	; oligos_5-7nt_m3 versus 11099_GBF1_M0268_1.02_CISBP_1.02_; m=7/55; ncol2=10; w=10; offset=0; strand=D; shift=9; score=29.4286; ---------ysACGTGkmm------ ; cor=0.854; Ncor=0.534; logoDP=3.312; NIcor=0.521; NsEucl=0.926; SSD=1.086; NSW=0.946; rcor=35; rNcor=27; rlogoDP=54; rNIcor=16; rNsEucl=23; rSSD=26; rNSW=25; rank_mean=29.429; match_rank=19 a 0 0 0 0 0 0 0 0 0 20 6 86 2 6 2 5 0 28 37 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 33 32 4 78 13 3 0 5 54 29 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 7 40 5 11 76 0 95 61 10 15 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 40 22 5 9 5 95 0 34 8 19 0 0 0 0 0 0
350_M00369_TRANSFAC_2012.1__shift8 (350_M00369_TRANSFAC_2012.1_)	0.870	0.461	4.225	0.436	0.922	0.974	0.946	23	49	36	34	27	21	24	30.571	22	; oligos_5-7nt_m3 versus 350_M00369_TRANSFAC_2012.1_; m=8/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=30.5714; --------gccACGTSrc------- ; cor=0.870; Ncor=0.461; logoDP=4.225; NIcor=0.436; NsEucl=0.922; SSD=0.974; NSW=0.946; rcor=23; rNcor=49; rlogoDP=36; rNIcor=34; rNsEucl=27; rSSD=21; rNSW=24; rank_mean=30.571; match_rank=22 a 0 0 0 0 0 0 0 0 3 3 1 17 0 0 0 0 4 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 2 8 11 0 17 0 0 5 0 8 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 8 1 4 0 0 17 0 12 8 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 3 1 0 0 0 17 0 3 3 0 0 0 0 0 0 0
660_M00943_TRANSFAC_2012.1__shift8 (660_M00943_TRANSFAC_2012.1_)	0.868	0.460	3.472	0.439	0.925	0.903	0.950	26	50	48	33	24	17	19	31.000	23	; oligos_5-7nt_m3 versus 660_M00943_TRANSFAC_2012.1_; m=9/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score= 31; --------gycACGTGgs------- ; cor=0.868; Ncor=0.460; logoDP=3.472; NIcor=0.439; NsEucl=0.925; SSD=0.903; NSW=0.950; rcor=26; rNcor=50; rlogoDP=48; rNIcor=33; rNsEucl=24; rSSD=17; rNSW=19; rank_mean=31.000; match_rank=23 a 0 0 0 0 0 0 0 0 3 3 2 16 0 0 0 0 3 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 7 10 1 16 0 0 4 1 6 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 7 1 4 0 1 16 1 13 8 4 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 4 1 0 0 1 16 0 3 3 0 0 0 0 0 0 0
1408_M01806_TRANSFAC_2012.1__shift9 (1408_M01806_TRANSFAC_2012.1_)	0.868	0.434	4.684	0.429	0.911	1.008	0.937	25	60	30	38	41	22	30	35.143	30	; oligos_5-7nt_m3 versus 1408_M01806_TRANSFAC_2012.1_; m=10/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=35.1429; ---------wsACGTGk-------- ; cor=0.868; Ncor=0.434; logoDP=4.684; NIcor=0.429; NsEucl=0.911; SSD=1.008; NSW=0.937; rcor=25; rNcor=60; rlogoDP=30; rNIcor=38; rNsEucl=41; rSSD=22; rNSW=30; rank_mean=35.143; match_rank=30 a 0 0 0 0 0 0 0 0 0 12 0 45 0 1 1 1 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 9 15 0 45 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 21 0 0 43 0 44 21 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 24 9 0 0 1 44 0 24 0 0 0 0 0 0 0 0
410_M00441_TRANSFAC_2012.1__shift7 (410_M00441_TRANSFAC_2012.1_)	0.845	0.470	5.381	0.448	0.913	1.504	0.925	42	46	19	30	37	49	39	37.429	31	; oligos_5-7nt_m3 versus 410_M00441_TRANSFAC_2012.1_; m=11/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=37.4286; -------KkcCACGTGgCm------ ; cor=0.845; Ncor=0.470; logoDP=5.381; NIcor=0.448; NsEucl=0.913; SSD=1.504; NSW=0.925; rcor=42; rNcor=46; rlogoDP=19; rNIcor=30; rNsEucl=37; rSSD=49; rNSW=39; rank_mean=37.429; match_rank=31 a 0 0 0 0 0 0 0 0 0 2 0 9 0 0 0 0 1 1 4 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 6 8 0 9 0 0 2 0 7 3 0 0 0 0 0 0 g 0 0 0 0 0 0 0 2 5 0 1 0 0 9 0 7 6 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 5 3 1 0 0 0 0 9 0 2 0 0 0 0 0 0 0 0
11100_GBF2_M0266_1.02_CISBP_1.02__rc_shift9 (11100_GBF2_M0266_1.02_CISBP_1.02__rc)	0.879	0.494	0.248	-0.128	0.927	0.870	0.952	18	32	79	78	22	16	18	37.571	32	; oligos_5-7nt_m3 versus 11100_GBF2_M0266_1.02_CISBP_1.02__rc; m=12/55; ncol2=9; w=9; offset=0; strand=R; shift=9; score=37.5714; ---------ybacgTGkm------- ; cor=0.879; Ncor=0.494; logoDP=0.248; NIcor=-0.128; NsEucl=0.927; SSD=0.870; NSW=0.952; rcor=18; rNcor=32; rlogoDP=79; rNIcor=78; rNsEucl=22; rSSD=16; rNSW=18; rank_mean=37.571; match_rank=32 a 0 0 0 0 0 0 0 0 0 20 18 54 7 10 0 9 1 28 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 35 29 14 59 22 6 0 11 43 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 14 28 18 20 59 0 88 51 17 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 31 25 14 14 9 94 3 37 12 0 0 0 0 0 0 0
11984_ZCW32_M0153_1.02_CISBP_1.02__shift8 (11984_ZCW32_M0153_1.02_CISBP_1.02_)	0.862	0.406	2.678	0.399	0.923	0.767	0.952	30	75	59	46	26	12	17	37.857	33	; oligos_5-7nt_m3 versus 11984_ZCW32_M0153_1.02_CISBP_1.02_; m=13/55; ncol2=9; w=8; offset=-1; strand=D; shift=8; score=37.8571; --------sscACGTGs-------- ; cor=0.862; Ncor=0.406; logoDP=2.678; NIcor=0.399; NsEucl=0.923; SSD=0.767; NSW=0.952; rcor=30; rNcor=75; rlogoDP=59; rNIcor=46; rNsEucl=26; rSSD=12; rNSW=17; rank_mean=37.857; match_rank=33 a 0 0 0 0 0 0 0 0 23 22 20 69 2 16 2 1 19 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 27 30 53 10 75 0 5 4 34 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 26 12 14 4 83 0 93 26 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 21 22 15 7 19 1 93 2 21 0 0 0 0 0 0 0 0
11101_GBF3_M0264_1.02_CISBP_1.02__shift9 (11101_GBF3_M0264_1.02_CISBP_1.02_)	0.823	0.514	2.320	0.500	0.919	1.317	0.934	48	29	67	18	31	40	33	38.000	34	; oligos_5-7nt_m3 versus 11101_GBF3_M0264_1.02_CISBP_1.02_; m=14/55; ncol2=10; w=10; offset=0; strand=D; shift=9; score= 38; ---------ybAcgTGkmm------ ; cor=0.823; Ncor=0.514; logoDP=2.320; NIcor=0.500; NsEucl=0.919; SSD=1.317; NSW=0.934; rcor=48; rNcor=29; rlogoDP=67; rNIcor=18; rNsEucl=31; rSSD=40; rNSW=33; rank_mean=38.000; match_rank=34 a 0 0 0 0 0 0 0 0 0 20 10 73 4 7 5 7 0 33 33 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 32 27 9 65 18 4 0 6 41 28 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 11 33 10 17 66 1 89 54 14 18 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 37 30 8 14 9 90 4 40 12 21 0 0 0 0 0 0
9053_MA0570_JASPAR_2014__shift7 (9053_MA0570_JASPAR_2014_)	0.758	0.638	6.759	0.647	0.927	2.732	0.915	81	17	7	7	21	81	53	38.143	35	; oligos_5-7nt_m3 versus 9053_MA0570_JASPAR_2014_; m=15/55; ncol2=19; w=16; offset=-2; strand=D; shift=7; score=38.1429; -------GgmCACGTGGCmcrvvvg ; cor=0.758; Ncor=0.638; logoDP=6.759; NIcor=0.647; NsEucl=0.927; SSD=2.732; NSW=0.915; rcor=81; rNcor=17; rlogoDP=7; rNIcor=7; rNsEucl=21; rSSD=81; rNSW=53; rank_mean=38.143; match_rank=35 a 0 0 0 0 0 0 0 0 8 19 0 43 0 0 0 0 0 0 17 6 13 20 12 13 10 c 0 0 0 0 0 0 0 4 2 16 35 0 44 0 0 0 0 44 14 24 6 11 19 12 6 g 0 0 0 0 0 0 0 32 28 0 8 1 0 44 0 44 38 0 9 9 21 11 13 17 23 t 0 0 0 0 0 0 0 8 6 9 1 0 0 0 44 0 6 0 4 5 4 2 0 2 5
411_M00442_TRANSFAC_2012.1__shift5 (411_M00442_TRANSFAC_2012.1_)	0.798	0.518	6.497	0.511	0.920	2.165	0.917	64	28	8	17	28	77	50	38.857	36	; oligos_5-7nt_m3 versus 411_M00442_TRANSFAC_2012.1_; m=16/55; ncol2=17; w=13; offset=-4; strand=D; shift=5; score=38.8571; -----kbggmCACGTGGCmcga--- ; cor=0.798; Ncor=0.518; logoDP=6.497; NIcor=0.511; NsEucl=0.920; SSD=2.165; NSW=0.917; rcor=64; rNcor=28; rlogoDP=8; rNIcor=17; rNsEucl=28; rSSD=77; rNSW=50; rank_mean=38.857; match_rank=36 a 0 0 0 0 0 7 3 0 8 23 0 47 1 0 0 0 0 2 18 8 11 22 0 0 0 c 0 0 0 0 0 11 12 8 5 16 38 0 48 0 0 0 0 47 17 24 10 11 0 0 0 g 0 0 0 0 0 16 20 32 30 0 10 2 0 49 0 49 43 0 8 11 22 10 0 0 0 t 0 0 0 0 0 12 12 9 6 10 1 0 0 0 49 0 6 0 4 4 4 3 0 0 0
9044_MA0561_JASPAR_2014__shift10 (9044_MA0561_JASPAR_2014_)	0.863	0.432	4.889	0.402	0.904	1.176	0.926	29	61	26	44	53	30	37	40.000	37	; oligos_5-7nt_m3 versus 9044_MA0561_JASPAR_2014_; m=17/55; ncol2=8; w=8; offset=1; strand=D; shift=10; score= 40; ----------CACGTGsc------- ; cor=0.863; Ncor=0.432; logoDP=4.889; NIcor=0.402; NsEucl=0.904; SSD=1.176; NSW=0.926; rcor=29; rNcor=61; rlogoDP=26; rNIcor=44; rNsEucl=53; rSSD=30; rNSW=37; rank_mean=40.000; match_rank=37 a 0 0 0 0 0 0 0 0 0 0 0 335 0 49 0 0 0 64 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 335 0 335 0 0 0 99 206 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 286 0 335 183 65 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 335 0 53 0 0 0 0 0 0 0 0
349_M00368_TRANSFAC_2012.1__shift8 (349_M00368_TRANSFAC_2012.1_)	0.846	0.448	5.364	0.424	0.904	1.481	0.918	41	54	20	41	52	48	46	43.143	41	; oligos_5-7nt_m3 versus 349_M00368_TRANSFAC_2012.1_; m=18/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=43.1429; --------kmCACGTGkm------- ; cor=0.846; Ncor=0.448; logoDP=5.364; NIcor=0.424; NsEucl=0.904; SSD=1.481; NSW=0.918; rcor=41; rNcor=54; rlogoDP=20; rNIcor=41; rNsEucl=52; rSSD=48; rNSW=46; rank_mean=43.143; match_rank=41 a 0 0 0 0 0 0 0 0 0 3 0 8 0 0 0 0 0 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 4 8 0 8 0 0 0 0 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 0 0 0 0 8 0 8 4 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 3 0 0 0 0 0 8 0 3 1 0 0 0 0 0 0 0
342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028__shift7 (342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028_)	0.854	0.474	7.587	0.464	0.900	2.003	0.900	34	43	2	27	60	73	72	44.429	42	; oligos_5-7nt_m3 versus 342_M00358_TRANSFAC_2012.1__bZIP911_1__Athamap_20091028_; m=19/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=44.4286; -------GrTGACGTGGCC------ ; cor=0.854; Ncor=0.474; logoDP=7.587; NIcor=0.464; NsEucl=0.900; SSD=2.003; NSW=0.900; rcor=34; rNcor=43; rlogoDP=2; rNIcor=27; rNsEucl=60; rSSD=73; rNSW=72; rank_mean=44.429; match_rank=42 a 0 0 0 0 0 0 0 1 10 0 0 22 0 0 0 0 0 4 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 22 0 0 0 0 18 21 0 0 0 0 0 0 g 0 0 0 0 0 0 0 21 12 0 22 0 0 22 0 22 22 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 22 0 0 0 0 22 0 0 0 0 0 0 0 0 0 0
11535_O22677_ANTMA_M2681_1.02_CISBP_1.02__shift7 (11535_O22677_ANTMA_M2681_1.02_CISBP_1.02_)	0.854	0.474	7.576	0.464	0.900	2.002	0.900	36	44	3	28	59	72	71	44.714	43	; oligos_5-7nt_m3 versus 11535_O22677_ANTMA_M2681_1.02_CISBP_1.02_; m=20/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=44.7143; -------GrTGACGTGGCC------ ; cor=0.854; Ncor=0.474; logoDP=7.576; NIcor=0.464; NsEucl=0.900; SSD=2.002; NSW=0.900; rcor=36; rNcor=44; rlogoDP=3; rNIcor=28; rNsEucl=59; rSSD=72; rNSW=71; rank_mean=44.714; match_rank=43 a 0 0 0 0 0 0 0 5 45 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 0.0000 18 5 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 82 95 0 0 0 0 0 0 g 0 0 0 0 0 0 0 95 55 0.0000 1.0000 0.0000 0.0000 1.0000 0.0000 1.0000 1.0000 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0 0 0 0 0 0 0 0
4993_ABF1_Athamap_20091028__shift9 (4993_ABF1_Athamap_20091028_)	0.855	0.481	6.470	0.465	0.894	1.806	0.900	33	39	9	24	71	67	73	45.143	44	; oligos_5-7nt_m3 versus 4993_ABF1_Athamap_20091028_; m=21/55; ncol2=9; w=9; offset=0; strand=D; shift=9; score=45.1429; ---------ACACGTGGC------- ; cor=0.855; Ncor=0.481; logoDP=6.470; NIcor=0.465; NsEucl=0.894; SSD=1.806; NSW=0.900; rcor=33; rNcor=39; rlogoDP=9; rNIcor=24; rNsEucl=71; rSSD=67; rNSW=73; rank_mean=45.143; match_rank=44 a 0 0 0 0 0 0 0 0 0 20 0 20 0 0 0 0 0 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 20 0 20 0 0 0 0 19 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 20 17 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 3 0 0 0 0 0 0 0 0
7247_PIF3_ArabidopsisPBM_20140210__shift8 (7247_PIF3_ArabidopsisPBM_20140210_)	0.851	0.451	5.538	0.424	0.901	1.601	0.911	38	53	17	40	57	54	60	45.571	45	; oligos_5-7nt_m3 versus 7247_PIF3_ArabidopsisPBM_20140210_; m=22/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=45.5714; --------sCCACGTGGs------- ; cor=0.851; Ncor=0.451; logoDP=5.538; NIcor=0.424; NsEucl=0.901; SSD=1.601; NSW=0.911; rcor=38; rNcor=53; rlogoDP=17; rNIcor=40; rNsEucl=57; rSSD=54; rNSW=60; rank_mean=45.571; match_rank=45 a 0 0 0 0 0 0 0 0 18 0 1 99 0 3 0 0 1 9 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 37 96 99 1 97 0 0 0 3 40 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 37 3 0 0 0 97 1 99 96 35 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 8 1 0 0 3 0 99 1 0 16 0 0 0 0 0 0 0
353_M00372_TRANSFAC_2012.1__rc_shift8 (353_M00372_TRANSFAC_2012.1__rc)	0.827	0.438	3.720	0.357	0.911	1.272	0.929	47	59	45	62	40	36	36	46.429	46	; oligos_5-7nt_m3 versus 353_M00372_TRANSFAC_2012.1__rc; m=23/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=46.4286; --------tybACGTGra------- ; cor=0.827; Ncor=0.438; logoDP=3.720; NIcor=0.357; NsEucl=0.911; SSD=1.272; NSW=0.929; rcor=47; rNcor=59; rlogoDP=45; rNIcor=62; rNsEucl=40; rSSD=36; rNSW=36; rank_mean=46.429; match_rank=46 a 0 0 0 0 0 0 0 0 4 4 0 25 0 0 0 1 6 11 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 10 11 0 25 0 0 6 0 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 5 0 7 0 0 25 0 18 13 3 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 9 8 7 0 0 0 25 0 3 3 0 0 0 0 0 0 0
409_M00440_TRANSFAC_2012.1__shift8 (409_M00440_TRANSFAC_2012.1_)	0.811	0.477	6.256	0.451	0.900	1.990	0.900	53	41	11	29	58	71	69	47.429	47	; oligos_5-7nt_m3 versus 409_M00440_TRANSFAC_2012.1_; m=24/55; ncol2=11; w=10; offset=-1; strand=D; shift=8; score=47.4286; --------khCACGTGvCm------ ; cor=0.811; Ncor=0.477; logoDP=6.256; NIcor=0.451; NsEucl=0.900; SSD=1.990; NSW=0.900; rcor=53; rNcor=41; rlogoDP=11; rNIcor=29; rNsEucl=58; rSSD=71; rNSW=69; rank_mean=47.429; match_rank=47 a 0 0 0 0 0 0 0 0 0 1 0 4 0 0 0 0 1 0 2 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2 4 0 4 0 0 0 1 4 1 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 2 0 0 0 0 4 0 4 2 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
11890_UNE10_M0158_1.02_CISBP_1.02__rc_shift9 (11890_UNE10_M0158_1.02_CISBP_1.02__rc)	0.853	0.426	4.775	0.374	0.899	1.309	0.918	37	63	29	57	63	39	44	47.429	48	; oligos_5-7nt_m3 versus 11890_UNE10_M0158_1.02_CISBP_1.02__rc; m=25/55; ncol2=8; w=8; offset=0; strand=R; shift=9; score=47.4286; ---------kCACGTGg-------- ; cor=0.853; Ncor=0.426; logoDP=4.775; NIcor=0.374; NsEucl=0.899; SSD=1.309; NSW=0.918; rcor=37; rNcor=63; rlogoDP=29; rNIcor=57; rNsEucl=63; rSSD=39; rNSW=44; rank_mean=47.429; match_rank=48 a 0 0 0 0 0 0 0 0 0 13 0 100 0 0 0 0 21 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 7 100 0 100 0 0 0 7 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 53 0 0 0 100 0 100 51 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 27 0 0 0 0 100 0 21 0 0 0 0 0 0 0 0
372_M00400_TRANSFAC_2012.1__shift0 (372_M00400_TRANSFAC_2012.1_)	0.766	0.490	7.955	0.471	0.913	3.848	0.880	77	36	1	22	36	82	80	47.714	50	; oligos_5-7nt_m3 versus 372_M00400_TRANSFAC_2012.1_; m=26/55; ncol2=25; w=16; offset=-9; strand=D; shift=0; score=47.7143; hhkCryybgCCACGTGGCCvCGACA ; cor=0.766; Ncor=0.490; logoDP=7.955; NIcor=0.471; NsEucl=0.913; SSD=3.848; NSW=0.880; rcor=77; rNcor=36; rlogoDP=1; rNIcor=22; rNsEucl=36; rSSD=82; rNSW=80; rank_mean=47.714; match_rank=50 a 3 3 2 0 4 1 0 0 3 0 0 13 0 0 0 0 0 0 2 4 2 1 10 0 10 c 5 3 1 6 2 4 2 3 1 13 13 0 13 0 0 0 0 5 8 4 10 1 2 12 0 g 1 2 6 0 6 3 0 6 7 0 0 0 0 13 0 13 13 0 0 3 1 9 1 1 3 t 3 4 4 0 1 5 2 3 2 0 0 0 0 0 13 0 0 0 1 1 0 0 0 0 0
351_M00370_TRANSFAC_2012.1__shift8 (351_M00370_TRANSFAC_2012.1_)	0.803	0.425	4.017	0.400	0.906	1.443	0.920	58	64	39	45	50	46	42	49.143	53	; oligos_5-7nt_m3 versus 351_M00370_TRANSFAC_2012.1_; m=27/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=49.1429; --------khsACGTsdm------- ; cor=0.803; Ncor=0.425; logoDP=4.017; NIcor=0.400; NsEucl=0.906; SSD=1.443; NSW=0.920; rcor=58; rNcor=64; rlogoDP=39; rNIcor=45; rNsEucl=50; rSSD=46; rNSW=42; rank_mean=49.143; match_rank=53 a 0 0 0 0 0 0 0 0 1 2 0 10 0 0 0 0 3 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 3 6 0 10 0 0 4 0 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 0 4 0 0 10 0 6 3 1 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 3 0 0 0 0 10 0 2 1 0 0 0 0 0 0 0
11736_SPT_M0162_1.02_CISBP_1.02__rc_shift9 (11736_SPT_M0162_1.02_CISBP_1.02__rc)	0.822	0.462	0.610	-0.034	0.912	1.261	0.930	49	47	73	72	38	34	34	49.571	55	; oligos_5-7nt_m3 versus 11736_SPT_M0162_1.02_CISBP_1.02__rc; m=28/55; ncol2=9; w=9; offset=0; strand=R; shift=9; score=49.5714; ---------gCACGTGsg------- ; cor=0.822; Ncor=0.462; logoDP=0.610; NIcor=-0.034; NsEucl=0.912; SSD=1.261; NSW=0.930; rcor=49; rNcor=47; rlogoDP=73; rNIcor=72; rNsEucl=38; rSSD=34; rNSW=34; rank_mean=49.571; match_rank=55 a 0 0 0 0 0 0 0 0 0 24 8 99 0 8 2 4 13 16 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 24 72 0 91 0 10 0 26 21 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 30 12 1 0 91 0 96 56 43 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 22 8 0 9 1 88 0 5 20 0 0 0 0 0 0 0
10569_0300010311_M0363_1.02_CISBP_1.02__shift8 (10569_0300010311_M0363_1.02_CISBP_1.02_)	0.785	0.462	4.547	0.440	0.906	1.756	0.912	69	48	33	32	48	64	57	50.143	56	; oligos_5-7nt_m3 versus 10569_0300010311_M0363_1.02_CISBP_1.02_; m=29/55; ncol2=11; w=10; offset=-1; strand=D; shift=8; score=50.1429; --------rtsACGTGgca------ ; cor=0.785; Ncor=0.462; logoDP=4.547; NIcor=0.440; NsEucl=0.906; SSD=1.756; NSW=0.912; rcor=69; rNcor=48; rlogoDP=33; rNIcor=32; rNsEucl=48; rSSD=64; rNSW=57; rank_mean=50.143; match_rank=56 a 0 0 0 0 0 0 0 0 29 23 3 100 0 0 0 0 14 19 34 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 21 13 38 0 100 0 0 10 4 41 22 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 5 56 0 0 100 0 90 59 20 22 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 21 59 3 0 0 0 100 0 23 20 22 0 0 0 0 0 0
1418_M01818_TRANSFAC_2012.1__shift10 (1418_M01818_TRANSFAC_2012.1_)	0.783	0.489	6.293	0.497	0.898	2.066	0.897	72	38	10	20	64	75	76	50.714	57	; oligos_5-7nt_m3 versus 1418_M01818_TRANSFAC_2012.1_; m=30/55; ncol2=10; w=10; offset=1; strand=D; shift=10; score=50.7143; ----------sACGTGGhvb----- ; cor=0.783; Ncor=0.489; logoDP=6.293; NIcor=0.497; NsEucl=0.898; SSD=2.066; NSW=0.897; rcor=72; rNcor=38; rlogoDP=10; rNIcor=20; rNsEucl=64; rSSD=75; rNSW=76; rank_mean=50.714; match_rank=57 a 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 1 2 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 2 0 4 0 0 0 0 2 1 2 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 2 0 0 4 0 4 4 0 1 1 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 1 0 1 0 0 0 0 0
1226_M01585_TRANSFAC_2012.1__shift8 (1226_M01585_TRANSFAC_2012.1_)	0.801	0.424	3.927	0.398	0.905	1.476	0.918	60	65	42	47	51	47	45	51.000	58	; oligos_5-7nt_m3 versus 1226_M01585_TRANSFAC_2012.1_; m=31/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score= 51; --------grCACGTGrs------- ; cor=0.801; Ncor=0.424; logoDP=3.927; NIcor=0.398; NsEucl=0.905; SSD=1.476; NSW=0.918; rcor=60; rNcor=65; rlogoDP=42; rNIcor=47; rNsEucl=51; rSSD=47; rNSW=45; rank_mean=51.000; match_rank=58 a 0 0 0 0 0 0 0 0 19 28 3 87 0 2 3 1 30 23 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 14 24 99 0 100 0 0 2 4 29 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 59 36 2 17 1 104 0 101 50 31 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 14 18 2 2 5 0 103 2 22 23 0 0 0 0 0 0 0
761_M01065_TRANSFAC_2012.1__shift6 (761_M01065_TRANSFAC_2012.1_)	0.771	0.446	5.039	0.428	0.910	1.969	0.910	75	56	24	39	42	70	61	52.429	59	; oligos_5-7nt_m3 versus 761_M01065_TRANSFAC_2012.1_; m=32/55; ncol2=14; w=11; offset=-3; strand=D; shift=6; score=52.4286; ------kkctkACGTGKsvg----- ; cor=0.771; Ncor=0.446; logoDP=5.039; NIcor=0.428; NsEucl=0.910; SSD=1.969; NSW=0.910; rcor=75; rNcor=56; rlogoDP=24; rNIcor=39; rNsEucl=42; rSSD=70; rNSW=61; rank_mean=52.429; match_rank=59 a 0 0 0 0 0 0 2 1 4 4 0 17 0 0 0 1 0 3 6 4 0 0 0 0 0 c 0 0 0 0 0 0 0 1 5 2 4 0 17 0 0 0 0 5 5 3 0 0 0 0 0 g 0 0 0 0 0 0 7 10 4 2 8 0 0 17 0 16 12 6 5 6 0 0 0 0 0 t 0 0 0 0 0 0 8 5 4 9 5 0 0 0 17 0 5 3 1 4 0 0 0 0 0
12238_gw1.270.82.1_M0252_1.02_CISBP_1.02__rc_shift9 (12238_gw1.270.82.1_M0252_1.02_CISBP_1.02__rc)	0.837	0.419	4.641	0.369	0.895	1.404	0.912	44	67	32	58	70	44	56	53.000	60	; oligos_5-7nt_m3 versus 12238_gw1.270.82.1_M0252_1.02_CISBP_1.02__rc; m=33/55; ncol2=8; w=8; offset=0; strand=R; shift=9; score= 53; ---------gCACGTGg-------- ; cor=0.837; Ncor=0.419; logoDP=4.641; NIcor=0.369; NsEucl=0.895; SSD=1.404; NSW=0.912; rcor=44; rNcor=67; rlogoDP=32; rNIcor=58; rNsEucl=70; rSSD=44; rNSW=56; rank_mean=53.000; match_rank=60 a 0 0 0 0 0 0 0 0 0 14 0 100 0 0 0 0 23 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 8 100 0 95 0 0 0 15 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 64 0 0 0 100 0 100 46 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 14 0 0 5 0 100 0 16 0 0 0 0 0 0 0 0
12075_bHLH34_M0157_1.02_CISBP_1.02__shift9 (12075_bHLH34_M0157_1.02_CISBP_1.02_)	0.818	0.409	4.115	0.390	0.896	1.377	0.914	50	73	37	49	67	43	54	53.286	61	; oligos_5-7nt_m3 versus 12075_bHLH34_M0157_1.02_CISBP_1.02_; m=34/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=53.2857; ---------gCACGTGk-------- ; cor=0.818; Ncor=0.409; logoDP=4.115; NIcor=0.390; NsEucl=0.896; SSD=1.377; NSW=0.914; rcor=50; rNcor=73; rlogoDP=37; rNIcor=49; rNsEucl=67; rSSD=43; rNSW=54; rank_mean=53.286; match_rank=61 a 0 0 0 0 0 0 0 0 0 16 0 73 0 0 0 0 10 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 4 100 0 85 0 0 0 14 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 65 0 24 0 100 0 100 47 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 15 0 3 15 0 100 0 29 0 0 0 0 0 0 0 0
659_M00942_TRANSFAC_2012.1__shift8 (659_M00942_TRANSFAC_2012.1_)	0.814	0.431	5.414	0.402	0.895	1.772	0.902	52	62	18	43	69	65	67	53.714	62	; oligos_5-7nt_m3 versus 659_M00942_TRANSFAC_2012.1_; m=35/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=53.7143; --------kmCACGTGkm------- ; cor=0.814; Ncor=0.431; logoDP=5.414; NIcor=0.402; NsEucl=0.895; SSD=1.772; NSW=0.902; rcor=52; rNcor=62; rlogoDP=18; rNIcor=43; rNsEucl=69; rSSD=65; rNSW=67; rank_mean=53.714; match_rank=62 a 0 0 0 0 0 0 0 0 0 2 0 5 0 0 0 0 0 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 2 5 0 5 0 0 0 0 2 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 2 0 0 0 0 5 0 5 2 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 0 0 0 0 0 5 0 2 0 0 0 0 0 0 0 0
352_M00371_TRANSFAC_2012.1__shift8 (352_M00371_TRANSFAC_2012.1_)	0.790	0.418	3.876	0.389	0.903	1.511	0.916	67	68	43	50	54	50	51	54.714	63	; oligos_5-7nt_m3 versus 352_M00371_TRANSFAC_2012.1_; m=36/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=54.7143; --------shsACGTsds------- ; cor=0.790; Ncor=0.418; logoDP=3.876; NIcor=0.389; NsEucl=0.903; SSD=1.511; NSW=0.916; rcor=67; rNcor=68; rlogoDP=43; rNIcor=50; rNsEucl=54; rSSD=50; rNSW=51; rank_mean=54.714; match_rank=63 a 0 0 0 0 0 0 0 0 2 3 0 14 0 0 0 1 4 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 4 9 0 14 0 0 4 0 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 0 4 0 0 14 0 9 4 3 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 4 1 0 0 0 14 0 3 2 0 0 0 0 0 0 0
11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02__shift9 (11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02_)	0.830	0.415	5.100	0.396	0.888	1.596	0.900	45	70	22	48	80	53	70	55.429	64	; oligos_5-7nt_m3 versus 11288_LOC_Os05g36160_M0329_1.02_CISBP_1.02_; m=37/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=55.4286; ---------mCACGTGk-------- ; cor=0.830; Ncor=0.415; logoDP=5.100; NIcor=0.396; NsEucl=0.888; SSD=1.596; NSW=0.900; rcor=45; rNcor=70; rlogoDP=22; rNIcor=48; rNsEucl=80; rSSD=53; rNSW=70; rank_mean=55.429; match_rank=64 a 0 0 0 0 0 0 0 0 0 67 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 33 100 0 100 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 100 50 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 50 0 0 0 0 0 0 0 0
9051_MA0568_JASPAR_2014__shift9 (9051_MA0568_JASPAR_2014_)	0.804	0.402	3.364	0.381	0.899	1.308	0.918	57	82	53	53	62	38	43	55.429	65	; oligos_5-7nt_m3 versus 9051_MA0568_JASPAR_2014_; m=38/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=55.4286; ---------vCACGTGb-------- ; cor=0.804; Ncor=0.402; logoDP=3.364; NIcor=0.381; NsEucl=0.899; SSD=1.308; NSW=0.918; rcor=57; rNcor=82; rlogoDP=53; rNIcor=53; rNsEucl=62; rSSD=38; rNSW=43; rank_mean=55.429; match_rank=65 a 0 0 0 0 0 0 0 0 0 25 10 97 0 16 1 0 7 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 28 89 0 84 0 2 0 40 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 40 0 2 0 84 0 89 28 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 7 0 1 16 0 97 10 25 0 0 0 0 0 0 0 0
340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028__shift7 (340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028_)	0.802	0.445	7.187	0.430	0.889	2.479	0.876	59	57	4	36	77	79	81	56.143	66	; oligos_5-7nt_m3 versus 340_M00356_TRANSFAC_2012.1__bZIP910_1__Athamap_20091028_; m=39/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=56.1429; -------GATGACGTGGCm------ ; cor=0.802; Ncor=0.445; logoDP=7.187; NIcor=0.430; NsEucl=0.889; SSD=2.479; NSW=0.876; rcor=59; rNcor=57; rlogoDP=4; rNIcor=36; rNsEucl=77; rSSD=79; rNSW=81; rank_mean=56.143; match_rank=66 a 0 0 0 0 0 0 0 0 14 0 0 18 0 0 0 0 0 0 10 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 18 8 0 0 0 0 0 0 g 0 0 0 0 0 0 0 18 4 0 18 0 0 18 0 18 17 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 18 0 0 0 0 18 0 1 0 0 0 0 0 0 0 0
8766_MA0097_JASPAR_2014__shift7 (8766_MA0097_JASPAR_2014_)	0.806	0.448	6.218	0.423	0.894	2.247	0.888	56	55	12	42	72	78	78	56.143	67	; oligos_5-7nt_m3 versus 8766_MA0097_JASPAR_2014_; m=40/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=56.1429; -------GrTGACGTGkmC------ ; cor=0.806; Ncor=0.448; logoDP=6.218; NIcor=0.423; NsEucl=0.894; SSD=2.247; NSW=0.888; rcor=56; rNcor=55; rlogoDP=12; rNIcor=42; rNsEucl=72; rSSD=78; rNSW=78; rank_mean=56.143; match_rank=67 a 0 0 0 0 0 0 0 1 17 0 0 33 0 0 0 0 1 11 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 0 33 0 0 1 0 20 32 0 0 0 0 0 0 g 0 0 0 0 0 0 0 31 16 0 33 0 0 33 0 32 22 1 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 1 0 33 0 0 0 0 33 0 10 1 0 0 0 0 0 0 0
11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02__rc_shift8 (11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02__rc)	0.800	0.471	0.741	-0.067	0.909	1.655	0.917	61	45	72	73	44	58	49	57.429	68	; oligos_5-7nt_m3 versus 11282_LOC_Os02g49560_M0327_1.02_CISBP_1.02__rc; m=41/55; ncol2=11; w=10; offset=-1; strand=R; shift=8; score=57.4286; --------rwCACGTGgma------ ; cor=0.800; Ncor=0.471; logoDP=0.741; NIcor=-0.067; NsEucl=0.909; SSD=1.655; NSW=0.917; rcor=61; rNcor=45; rlogoDP=72; rNIcor=73; rNsEucl=44; rSSD=58; rNSW=49; rank_mean=57.429; match_rank=68 a 0 0 0 0 0 0 0 0 29 47 3 100 0 0 0 0 12 25 33 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 21 19 72 0 100 0 0 7 4 39 22 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 7 22 0 0 100 0 93 64 18 23 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 21 27 3 0 0 0 100 0 20 18 22 0 0 0 0 0 0
11534_O22676_ANTMA_M2679_1.02_CISBP_1.02__shift7 (11534_O22676_ANTMA_M2679_1.02_CISBP_1.02_)	0.800	0.445	7.169	0.430	0.888	2.487	0.876	62	58	5	37	79	80	82	57.571	69	; oligos_5-7nt_m3 versus 11534_O22676_ANTMA_M2679_1.02_CISBP_1.02_; m=42/55; ncol2=12; w=10; offset=-2; strand=D; shift=7; score=57.5714; -------GATGACGTGGCm------ ; cor=0.800; Ncor=0.445; logoDP=7.169; NIcor=0.430; NsEucl=0.888; SSD=2.487; NSW=0.876; rcor=62; rNcor=58; rlogoDP=5; rNIcor=37; rNsEucl=79; rSSD=80; rNSW=82; rank_mean=57.571; match_rank=69 a 0 0 0 0 0 0 0 0.0000 78 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0.0000 0 0.0000 56 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0.0000 0 0.0000 0.0000 0.0000 1.0000 0.0000 0.0000 0.0000 0 1.0000 44 0 0 0 0 0 0 g 0 0 0 0 0 0 0 1.0000 22 0.0000 1.0000 0.0000 0.0000 1.0000 0.0000 1.0000 94 0.0000 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0.0000 0 1.0000 0.0000 0.0000 0.0000 0.0000 1.0000 0.0000 6 0.0000 0 0 0 0 0 0 0
10590_ABI5_M0261_1.02_CISBP_1.02__rc_shift9 (10590_ABI5_M0261_1.02_CISBP_1.02__rc)	0.789	0.493	2.588	0.105	0.906	1.774	0.911	68	34	60	69	49	66	59	57.857	70	; oligos_5-7nt_m3 versus 10590_ABI5_M0261_1.02_CISBP_1.02__rc; m=43/55; ncol2=10; w=10; offset=0; strand=R; shift=9; score=57.8571; ---------mCACGTGkcv------ ; cor=0.789; Ncor=0.493; logoDP=2.588; NIcor=0.105; NsEucl=0.906; SSD=1.774; NSW=0.911; rcor=68; rNcor=34; rlogoDP=60; rNIcor=69; rNsEucl=49; rSSD=66; rNSW=59; rank_mean=57.857; match_rank=70 a 0 0 0 0 0 0 0 0 0 34 7 100 0 0 0 0 8 17 31 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 34 71 0 100 0 0 8 0 66 26 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 16 7 0 0 100 0 92 31 8 26 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 16 15 0 0 0 100 0 61 9 17 0 0 0 0 0 0
356_M00375_TRANSFAC_2012.1__rc_shift8 (356_M00375_TRANSFAC_2012.1__rc)	0.785	0.415	3.958	0.365	0.901	1.591	0.912	70	69	41	59	56	52	58	57.857	71	; oligos_5-7nt_m3 versus 356_M00375_TRANSFAC_2012.1__rc; m=44/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=57.8571; --------sysACGTsds------- ; cor=0.785; Ncor=0.415; logoDP=3.958; NIcor=0.365; NsEucl=0.901; SSD=1.591; NSW=0.912; rcor=70; rNcor=69; rlogoDP=41; rNIcor=59; rNsEucl=56; rSSD=52; rNSW=58; rank_mean=57.857; match_rank=71 a 0 0 0 0 0 0 0 0 1 1 0 10 0 0 0 1 3 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 2 2 4 0 10 0 0 4 0 5 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 5 0 5 0 0 10 0 5 3 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 5 1 0 0 0 10 0 2 1 0 0 0 0 0 0 0
9045_MA0562_JASPAR_2014__shift9 (9045_MA0562_JASPAR_2014_)	0.811	0.405	4.529	0.385	0.889	1.579	0.901	54	76	34	52	76	51	68	58.714	72	; oligos_5-7nt_m3 versus 9045_MA0562_JASPAR_2014_; m=45/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=58.7143; ---------YCACRTGs-------- ; cor=0.811; Ncor=0.405; logoDP=4.529; NIcor=0.385; NsEucl=0.889; SSD=1.579; NSW=0.901; rcor=54; rNcor=76; rlogoDP=34; rNIcor=52; rNsEucl=76; rSSD=51; rNSW=68; rank_mean=58.714; match_rank=72 a 0 0 0 0 0 0 0 0 0 0 0 286 0 91 0 0 0 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 78 286 0 286 0 0 0 95 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 195 0 286 161 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 208 0 0 0 0 286 0 30 0 0 0 0 0 0 0 0
10574_1500010105_M0364_1.02_CISBP_1.02__rc_shift10 (10574_1500010105_M0364_1.02_CISBP_1.02__rc)	0.799	0.499	0.463	-0.183	0.907	1.732	0.913	63	31	75	82	47	61	55	59.143	73	; oligos_5-7nt_m3 versus 10574_1500010105_M0364_1.02_CISBP_1.02__rc; m=46/55; ncol2=10; w=10; offset=1; strand=R; shift=10; score=59.1429; ----------CACGTGGCrw----- ; cor=0.799; Ncor=0.499; logoDP=0.463; NIcor=-0.183; NsEucl=0.907; SSD=1.732; NSW=0.913; rcor=63; rNcor=31; rlogoDP=75; rNIcor=82; rNsEucl=47; rSSD=61; rNSW=55; rank_mean=59.143; match_rank=73 a 0 0 0 0 0 0 0 0 0 0 7 93 2 0 0 2 0 8 40 29 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 79 0 84 6 0 0 0 79 6 24 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 9 6 10 91 0 92 79 1 46 22 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 5 1 4 3 100 6 21 12 8 25 0 0 0 0 0
9043_MA0560_JASPAR_2014__rc_shift9 (9043_MA0560_JASPAR_2014__rc)	0.784	0.490	2.910	0.076	0.902	1.904	0.905	71	37	58	70	55	69	64	60.571	74	; oligos_5-7nt_m3 versus 9043_MA0560_JASPAR_2014__rc; m=47/55; ncol2=10; w=10; offset=0; strand=R; shift=9; score=60.5714; ---------yCACGTGGch------ ; cor=0.784; Ncor=0.490; logoDP=2.910; NIcor=0.076; NsEucl=0.902; SSD=1.904; NSW=0.905; rcor=71; rNcor=37; rlogoDP=58; rNIcor=70; rNsEucl=55; rSSD=69; rNSW=64; rank_mean=60.571; match_rank=74 a 0 0 0 0 0 0 0 0 0 98 0 527 0 118 0 0 15 116 143 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 137 527 0 527 0 0 0 94 222 148 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 33 0 0 0 409 0 527 399 131 26 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 259 0 0 0 0 527 0 19 58 210 0 0 0 0 0 0
10633_AT1G01260_M0150_1.02_CISBP_1.02__shift9 (10633_AT1G01260_M0150_1.02_CISBP_1.02_)	0.809	0.404	4.820	0.380	0.887	1.628	0.898	55	78	28	55	81	55	74	60.857	75	; oligos_5-7nt_m3 versus 10633_AT1G01260_M0150_1.02_CISBP_1.02_; m=48/55; ncol2=8; w=8; offset=0; strand=D; shift=9; score=60.8571; ---------sCACGTGk-------- ; cor=0.809; Ncor=0.404; logoDP=4.820; NIcor=0.380; NsEucl=0.887; SSD=1.628; NSW=0.898; rcor=55; rNcor=78; rlogoDP=28; rNIcor=55; rNsEucl=81; rSSD=55; rNSW=74; rank_mean=60.857; match_rank=75 a 0 0 0 0 0 0 0 0 0 6 0 100 0 0 0 0 13 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 28 100 0 100 0 0 0 7 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 44 0 0 0 100 0 100 27 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 22 0 0 0 0 100 0 53 0 0 0 0 0 0 0 0
662_M00945_TRANSFAC_2012.1__shift8 (662_M00945_TRANSFAC_2012.1_)	0.770	0.407	3.865	0.381	0.899	1.653	0.908	76	74	44	54	61	57	62	61.143	76	; oligos_5-7nt_m3 versus 662_M00945_TRANSFAC_2012.1_; m=49/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=61.1429; --------vhsACGTsdb------- ; cor=0.770; Ncor=0.407; logoDP=3.865; NIcor=0.381; NsEucl=0.899; SSD=1.653; NSW=0.908; rcor=76; rNcor=74; rlogoDP=44; rNIcor=54; rNsEucl=61; rSSD=57; rNSW=62; rank_mean=61.143; match_rank=76 a 0 0 0 0 0 0 0 0 3 3 0 14 0 0 0 1 4 2 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 3 4 9 0 14 0 0 4 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 3 0 4 0 0 14 0 9 4 3 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 2 4 1 0 0 0 14 0 3 3 0 0 0 0 0 0 0
604_M00788_TRANSFAC_2012.1__shift8 (604_M00788_TRANSFAC_2012.1_)	0.779	0.412	6.115	0.432	0.886	2.121	0.882	74	72	15	35	82	76	79	61.857	77	; oligos_5-7nt_m3 versus 604_M00788_TRANSFAC_2012.1_; m=50/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=61.8571; --------wwcACGTGGW------- ; cor=0.779; Ncor=0.412; logoDP=6.115; NIcor=0.432; NsEucl=0.886; SSD=2.121; NSW=0.882; rcor=74; rNcor=72; rlogoDP=15; rNIcor=35; rNsEucl=82; rSSD=76; rNSW=79; rank_mean=61.857; match_rank=77 a 0 0 0 0 0 0 0 0 4 8 0 13 0 0 0 0 0 3 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 1 0 8 0 13 0 0 0 0 0 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 2 0 3 0 0 13 0 13 4 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 5 4 2 0 0 0 13 0 0 1 0 0 0 0 0 0 0
11589_PIL5_M0156_1.02_CISBP_1.02__shift8 (11589_PIL5_M0156_1.02_CISBP_1.02_)	0.763	0.404	3.626	0.375	0.896	1.737	0.904	78	79	47	56	66	62	65	64.714	78	; oligos_5-7nt_m3 versus 11589_PIL5_M0156_1.02_CISBP_1.02_; m=51/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=64.7143; --------rbCACGTGvy------- ; cor=0.763; Ncor=0.404; logoDP=3.626; NIcor=0.375; NsEucl=0.896; SSD=1.737; NSW=0.904; rcor=78; rNcor=79; rlogoDP=47; rNIcor=56; rNsEucl=66; rSSD=62; rNSW=65; rank_mean=64.714; match_rank=78 a 0 0 0 0 0 0 0 0 29 14 3 96 0 9 1 2 30 19 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 22 28 94 0 91 0 3 1 28 30 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 29 28 1 2 0 91 0 94 28 22 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 20 30 2 2 9 0 96 3 14 29 0 0 0 0 0 0 0
5039_TGA1a_Athamap_20091028__rc_shift8 (5039_TGA1a_Athamap_20091028__rc)	0.762	0.403	3.960	0.359	0.896	1.754	0.903	79	80	40	61	68	63	66	65.286	79	; oligos_5-7nt_m3 versus 5039_TGA1a_Athamap_20091028__rc; m=52/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=65.2857; --------swsACGTSds------- ; cor=0.762; Ncor=0.403; logoDP=3.960; NIcor=0.359; NsEucl=0.896; SSD=1.754; NSW=0.903; rcor=79; rNcor=80; rlogoDP=40; rNIcor=61; rNsEucl=68; rSSD=63; rNSW=66; rank_mean=65.286; match_rank=79 a 0 0 0 0 0 0 0 0 1 3 0 11 0 0 0 0 4 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 5 2 7 0 11 0 0 3 1 4 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 4 1 4 0 0 11 0 8 3 5 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 5 0 0 0 0 11 0 3 1 0 0 0 0 0 0 0
7290_bZIP60_2_ArabidopsisPBM_20140210__rc_shift8 (7290_bZIP60_2_ArabidopsisPBM_20140210__rc)	0.780	0.413	2.388	0.241	0.898	1.701	0.905	73	71	64	63	65	59	63	65.429	80	; oligos_5-7nt_m3 versus 7290_bZIP60_2_ArabidopsisPBM_20140210__rc; m=53/55; ncol2=10; w=9; offset=-1; strand=R; shift=8; score=65.4286; --------rTGACGTGgc------- ; cor=0.780; Ncor=0.413; logoDP=2.388; NIcor=0.241; NsEucl=0.898; SSD=1.701; NSW=0.905; rcor=73; rNcor=71; rlogoDP=64; rNIcor=63; rNsEucl=65; rSSD=59; rNSW=63; rank_mean=65.429; match_rank=80 a 0 0 0 0 0 0 0 0 40 2 3 92 2 5 3 4 7 18 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 11 4 4 2 88 3 3 8 9 53 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 43 3 88 3 3 90 3 83 64 10 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 6 91 5 3 7 2 91 5 20 19 0 0 0 0 0 0 0
663_M00946_TRANSFAC_2012.1__shift8 (663_M00946_TRANSFAC_2012.1_)	0.761	0.403	4.345	0.387	0.893	1.838	0.898	80	81	35	51	73	68	75	66.143	81	; oligos_5-7nt_m3 versus 663_M00946_TRANSFAC_2012.1_; m=54/55; ncol2=10; w=9; offset=-1; strand=D; shift=8; score=66.1429; --------RhsACGTsdY------- ; cor=0.761; Ncor=0.403; logoDP=4.345; NIcor=0.387; NsEucl=0.893; SSD=1.838; NSW=0.898; rcor=80; rNcor=81; rlogoDP=35; rNIcor=51; rNsEucl=73; rSSD=68; rNSW=75; rank_mean=66.143; match_rank=81 a 0 0 0 0 0 0 0 0 1 1 0 6 0 0 0 0 2 0 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 1 3 0 6 0 0 3 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 3 0 3 0 0 6 0 3 1 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 2 0 0 0 0 6 0 1 1 0 0 0 0 0 0 0
4997_ABI5_Athamap_20091028__rc_shift9 (4997_ABI5_Athamap_20091028__rc)	0.754	0.424	0.479	-0.128	0.888	2.014	0.888	82	66	74	79	78	74	77	75.714	82	; oligos_5-7nt_m3 versus 4997_ABI5_Athamap_20091028__rc; m=55/55; ncol2=9; w=9; offset=0; strand=R; shift=9; score=75.7143; ---------YvACGTrKM------- ; cor=0.754; Ncor=0.424; logoDP=0.479; NIcor=-0.128; NsEucl=0.888; SSD=2.014; NSW=0.888; rcor=82; rNcor=66; rlogoDP=74; rNIcor=79; rNsEucl=78; rSSD=74; rNSW=77; rank_mean=75.714; match_rank=82 a 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 2 0 1 0 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 3 2 0 4 0 0 0 0 3 0 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 1 0 0 4 0 2 1 0 0 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 1 0 0 0 0 4 0 3 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_5-7nt_m4_shift0 ; 4 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
oligos_5-7nt_m4_shift0 (oligos_5-7nt_m4)
; oligos_5-7nt_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; wrGAAAAGAGra ; Alignment reference a 65 76 15 180 170 182 188 20 177 15 82 70 c 34 26 12 8 5 5 1 2 6 3 32 38 g 47 58 163 6 12 8 2 165 9 174 50 49 t 51 37 7 3 10 2 6 10 5 5 33 40

339_M00355_TRANSFAC_2012.1__shift0 (339_M00355_TRANSFAC_2012.1_) 0.791 0.725 5.268 0.704 0.916 1.725 0.922 66 6 21 5 34 60 41 33.286 27
; oligos_5-7nt_m4 versus 339_M00355_TRANSFAC_2012.1_; m=1/3; ncol2=11; w=11; offset=0; strand=D; shift=0; score=33.2857; wwdwAAAGhgm- ; cor=0.791; Ncor=0.725; logoDP=5.268; NIcor=0.704; NsEucl=0.916; SSD=1.725; NSW=0.922; rcor=66; rNcor=6; rlogoDP=21; rNIcor=5; rNsEucl=34; rSSD=60; rNSW=41; rank_mean=33.286; match_rank=27 a 7 7 4 9 16 16 16 0 4 3 7 0 c 3 2 3 1 0 0 0 0 7 3 5 0 g 2 1 4 0 0 0 0 16 1 9 3 0 t 4 6 5 6 0 0 0 0 4 1 1 0

7217_DOF5.7_ArabidopsisPBM_20140210__shift2 (7217_DOF5.7_ArabidopsisPBM_20140210_) 0.798 0.665 2.996 0.645 0.909 1.652 0.917 65 14 56 8 43 56 48 41.429 38
; oligos_5-7nt_m4 versus 7217_DOF5.7_ArabidopsisPBM_20140210_; m=2/3; ncol2=10; w=10; offset=2; strand=D; shift=2; score=41.4286; --raWAArrkgr ; cor=0.798; Ncor=0.665; logoDP=2.996; NIcor=0.645; NsEucl=0.909; SSD=1.652; NSW=0.917; rcor=65; rNcor=14; rlogoDP=56; rNIcor=8; rNsEucl=43; rSSD=56; rNSW=48; rank_mean=41.429; match_rank=38 a 0 0 39 45 68 97 90 36 48 10 17 29 c 0 0 21 9 1 0 0 4 7 19 21 22 g 0 0 27 22 6 1 8 59 44 46 41 31 t 0 0 13 24 25 2 2 1 1 25 21 18

11836_TMO6_M0654_1.02_CISBP_1.02__shift1 (11836_TMO6_M0654_1.02_CISBP_1.02_) 0.815 0.476 1.920 0.469 0.891 1.154 0.918 51 42 69 23 74 28 47 47.714 49
; oligos_5-7nt_m4 versus 11836_TMO6_M0654_1.02_CISBP_1.02_; m=3/3; ncol2=7; w=7; offset=1; strand=D; shift=1; score=47.7143; -vawAAmG---- ; cor=0.815; Ncor=0.476; logoDP=1.920; NIcor=0.469; NsEucl=0.891; SSD=1.154; NSW=0.918; rcor=51; rNcor=42; rlogoDP=69; rNIcor=23; rNsEucl=74; rSSD=28; rNSW=47; rank_mean=47.714; match_rank=49 a 0 25 33 40 84 85 61 7 0 0 0 0 c 0 25 21 13 6 8 33 5 0 0 0 0 g 0 26 23 14 2 0 1 77 0 0 0 0 t 0 24 23 33 8 7 5 11 0 0 0 0

Matrix name	cor	Ncor	logoDP	NIcor	NsEucl	SSD	NSW	rcor	rNcor	rlogoDP	rNIcor	rNsEucl	rSSD	rNSW	rank_mean	match_rank	Aligned matrices
oligos_5-7nt_m4_shift0 (oligos_5-7nt_m4)																	; oligos_5-7nt_m4; m=0 (reference); ncol1=12; shift=0; ncol=12; wrGAAAAGAGra ; Alignment reference a 65 76 15 180 170 182 188 20 177 15 82 70 c 34 26 12 8 5 5 1 2 6 3 32 38 g 47 58 163 6 12 8 2 165 9 174 50 49 t 51 37 7 3 10 2 6 10 5 5 33 40
339_M00355_TRANSFAC_2012.1__shift0 (339_M00355_TRANSFAC_2012.1_)	0.791	0.725	5.268	0.704	0.916	1.725	0.922	66	6	21	5	34	60	41	33.286	27	; oligos_5-7nt_m4 versus 339_M00355_TRANSFAC_2012.1_; m=1/3; ncol2=11; w=11; offset=0; strand=D; shift=0; score=33.2857; wwdwAAAGhgm- ; cor=0.791; Ncor=0.725; logoDP=5.268; NIcor=0.704; NsEucl=0.916; SSD=1.725; NSW=0.922; rcor=66; rNcor=6; rlogoDP=21; rNIcor=5; rNsEucl=34; rSSD=60; rNSW=41; rank_mean=33.286; match_rank=27 a 7 7 4 9 16 16 16 0 4 3 7 0 c 3 2 3 1 0 0 0 0 7 3 5 0 g 2 1 4 0 0 0 0 16 1 9 3 0 t 4 6 5 6 0 0 0 0 4 1 1 0
7217_DOF5.7_ArabidopsisPBM_20140210__shift2 (7217_DOF5.7_ArabidopsisPBM_20140210_)	0.798	0.665	2.996	0.645	0.909	1.652	0.917	65	14	56	8	43	56	48	41.429	38	; oligos_5-7nt_m4 versus 7217_DOF5.7_ArabidopsisPBM_20140210_; m=2/3; ncol2=10; w=10; offset=2; strand=D; shift=2; score=41.4286; --raWAArrkgr ; cor=0.798; Ncor=0.665; logoDP=2.996; NIcor=0.645; NsEucl=0.909; SSD=1.652; NSW=0.917; rcor=65; rNcor=14; rlogoDP=56; rNIcor=8; rNsEucl=43; rSSD=56; rNSW=48; rank_mean=41.429; match_rank=38 a 0 0 39 45 68 97 90 36 48 10 17 29 c 0 0 21 9 1 0 0 4 7 19 21 22 g 0 0 27 22 6 1 8 59 44 46 41 31 t 0 0 13 24 25 2 2 1 1 25 21 18
11836_TMO6_M0654_1.02_CISBP_1.02__shift1 (11836_TMO6_M0654_1.02_CISBP_1.02_)	0.815	0.476	1.920	0.469	0.891	1.154	0.918	51	42	69	23	74	28	47	47.714	49	; oligos_5-7nt_m4 versus 11836_TMO6_M0654_1.02_CISBP_1.02_; m=3/3; ncol2=7; w=7; offset=1; strand=D; shift=1; score=47.7143; -vawAAmG---- ; cor=0.815; Ncor=0.476; logoDP=1.920; NIcor=0.469; NsEucl=0.891; SSD=1.154; NSW=0.918; rcor=51; rNcor=42; rlogoDP=69; rNIcor=23; rNsEucl=74; rSSD=28; rNSW=47; rank_mean=47.714; match_rank=49 a 0 25 33 40 84 85 61 7 0 0 0 0 c 0 25 21 13 6 8 33 5 0 0 0 0 g 0 26 23 14 2 0 1 77 0 0 0 0 t 0 24 23 33 8 7 5 11 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m3_shift0 ; 2 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NIcor NsEucl SSD NSW rcor rNcor rlogoDP rNIcor rNsEucl rSSD rNSW rank_mean match_rank Aligned matrices
dyads_test_vs_ctrl_m3_shift0 (dyads_test_vs_ctrl_m3)
; dyads_test_vs_ctrl_m3; m=0 (reference); ncol1=25; shift=0; ncol=26; wtAAAtwwwwrkkwwawAaaTTAww- ; Alignment reference a 81 71 248 244 254 33 92 152 133 122 111 65 58 98 98 88 79 200 181 192 25 34 246 93 104 0 c 65 59 14 16 11 71 23 15 1 62 65 29 31 34 41 65 54 21 25 28 22 11 8 44 51 0 g 51 49 13 10 4 64 62 14 19 9 75 86 97 50 56 65 53 17 25 16 11 17 13 60 46 0 t 89 107 11 16 17 118 109 105 133 93 35 106 100 104 91 68 100 48 55 50 228 224 19 89 85 0

10694_ATHB22_M0844_1.02_CISBP_1.02__rc_shift13 (10694_ATHB22_M0844_1.02_CISBP_1.02__rc) 0.877 0.405 1.067 0.238 0.950 0.721 0.970 20 77 71 64 3 8 3 35.143 29
; dyads_test_vs_ctrl_m3 versus 10694_ATHB22_M0844_1.02_CISBP_1.02__rc; m=1/1; ncol2=13; w=12; offset=13; strand=R; shift=13; score=35.1429; -------------awwwawATTATwa ; cor=0.877; Ncor=0.405; logoDP=1.067; NIcor=0.238; NsEucl=0.950; SSD=0.721; NSW=0.970; rcor=20; rNcor=77; rlogoDP=71; rNIcor=64; rNsEucl=3; rSSD=8; rNSW=3; rank_mean=35.143; match_rank=29 a 0 0 0 0 0 0 0 0 0 0 0 0 0 32 31 36 27 63 50 100 0 13 74 10 28 31 c 0 0 0 0 0 0 0 0 0 0 0 0 0 22 20 14 7 2 0 0 10 2 5 10 18 23 g 0 0 0 0 0 0 0 0 0 0 0 0 0 23 20 15 7 13 0 0 0 2 5 10 18 23 t 0 0 0 0 0 0 0 0 0 0 0 0 0 23 29 35 59 22 50 0 90 83 16 70 36 23