; parse-gtf -v 2 -i $RSAT/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.gtf -fasta $RSAT/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.pep.all.fa -org_name Actinidia_chinensis.Red5_PS1_1.69.0.46 -task all -taxid 1590841 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.gtf ; fasta /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Actinidia_chinensis.Red5_PS1_1.69.0.46/genome/Actinidia_chinensis.Red5_PS1_1.69.0.46_exon.gtf ; Parsed rows per feature type ; cds 181058 ; exon 181063 ; five_prime_utr 32896 ; gene 33044 ; start_codon 32493 ; stop_codon 11011 ; three_prime_utr 32766 ; transcript 33115 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; LG1 17562 5832 5832 1110 1111 1092 371 1103 1111 ; LG10 15605 5217 5217 969 979 963 311 970 979 ; LG11 18355 6248 6248 1108 1104 1096 341 1095 1115 ; LG12 17121 5782 5782 1047 1049 1029 352 1031 1049 ; LG13 22510 7580 7580 1384 1384 1351 462 1379 1390 ; LG14 17604 5854 5854 1099 1100 1094 391 1100 1112 ; LG15 17951 6070 6070 1095 1100 1077 340 1095 1104 ; LG16 19683 6543 6544 1240 1245 1224 413 1229 1245 ; LG17 14593 4859 4859 919 924 910 278 920 924 ; LG18 19843 6710 6710 1209 1210 1193 393 1205 1213 ; LG19 10609 3590 3590 645 646 637 214 641 646 ; LG2 16327 5273 5273 1086 1089 1070 366 1081 1089 ; LG20 17676 6066 6066 1046 1050 1029 328 1041 1050 ; LG21 17602 6031 6031 1041 1039 1032 340 1038 1050 ; LG22 17669 5976 5976 1073 1079 1053 360 1072 1080 ; LG23 38096 12918 12919 2307 2316 2272 766 2282 2316 ; LG24 20047 6864 6864 1184 1190 1170 399 1186 1190 ; LG25 16793 5750 5750 994 997 980 332 993 997 ; LG26 20632 7070 7071 1218 1230 1190 407 1215 1231 ; LG27 15925 5278 5278 1007 1008 1002 336 1003 1013 ; LG28 16328 5482 5482 1000 1008 989 359 1000 1008 ; LG29 15922 5385 5385 939 983 964 333 948 985 ; LG3 26543 8684 8685 1721 1723 1694 608 1705 1723 ; LG4 12469 4194 4194 770 771 761 248 760 771 ; LG5 16059 5499 5499 951 950 941 313 951 955 ; LG6 16939 5667 5667 1045 1049 1033 380 1047 1051 ; LG7 18001 6173 6173 1059 1065 1048 360 1057 1066 ; LG8 23461 7894 7895 1431 1439 1412 519 1426 1445 ; LG9 18586 6343 6343 1108 1112 1095 363 1109 1113 ; ps1sf1427 35 12 12 2 2 2 1 2 2 ; ps1sf1442 16 3 3 2 2 2 0 2 2 ; ps1sf1452 41 10 10 4 4 4 1 4 4 ; ps1sf1466 24 7 7 2 2 2 0 2 2 ; ps1sf1471 19 4 4 2 2 2 1 2 2 ; ps1sf1475 15 5 5 1 1 1 0 1 1 ; ps1sf1481 8 1 1 1 1 1 1 1 1 ; ps1sf1498 9 2 2 1 1 1 0 1 1 ; ps1sf1500 8 1 1 1 1 1 1 1 1 ; ps1sf1554 19 7 7 1 1 1 0 1 1 ; ps1sf1578 8 1 1 1 1 1 1 1 1 ; ps1sf1593 11 3 3 1 1 1 0 1 1 ; ps1sf1596 7 1 1 1 1 1 0 1 1 ; ps1sf1611 12 3 3 1 1 1 1 1 1 ; ps1sf1635 10 2 2 1 1 1 1 1 1 ; ps1sf1644 10 2 2 1 1 1 1 1 1 ; ps1sf1679 17 6 6 1 1 1 0 1 1 ; ps1sf1701 12 3 3 1 1 1 1 1 1 ; ps1sf1712 38 14 14 2 2 2 0 2 2 ; ps1sf1741 8 1 1 1 1 1 1 1 1 ; ps1sf1748 13 4 4 1 1 1 0 1 1 ; ps1sf1765 17 6 6 1 1 1 0 1 1 ; ps1sf1830 7 1 1 1 1 1 0 1 1 ; ps1sf1873 6 1 1 1 1 1 0 0 1 ; ps1sf1889 6 1 1 1 1 1 0 0 1 ; ps1sf1917 7 1 1 1 1 1 0 1 1 ; ps1sf1983 9 2 2 1 1 1 0 1 1 ; ps1sf1986 10 2 2 1 1 1 1 1 1 ; ps1sf1994 7 1 1 1 1 1 0 1 1 ; ps1sf1998 10 2 2 1 1 1 1 1 1 ; ps1sf2112 7 1 1 1 1 1 0 1 1 ; ps1sf2194 20 7 7 1 1 1 1 1 1 ; ps1sf2204 7 1 1 1 1 1 1 0 1 ; ps1sf2208 9 2 2 1 1 1 0 1 1 ; ps1sf2256 15 5 5 1 1 1 0 1 1 ; ps1sf2291 7 1 1 1 1 1 0 1 1 ; ps1sf2314 7 1 1 1 1 1 0 1 1 ; ps1sf2486 8 1 1 1 1 1 1 1 1 ; ps1sf2507 12 3 3 1 1 1 1 1 1 ; ps1sf2510 8 1 1 1 1 1 1 1 1 ; ps1sf2605 20 5 5 2 2 2 0 2 2 ; ps1sf2651 7 1 1 1 1 0 1 1 1 ; ps1sf2652 9 2 2 1 1 1 0 1 1 ; ps1sf2702 6 1 1 1 1 1 0 0 1 ; ps1sf2898 11 3 3 1 1 1 0 1 1 ; ps1sf2925 14 4 4 1 1 1 1 1 1 ; ps1sf2933 9 2 2 1 1 1 0 1 1 ; ps1sf2958 7 1 1 1 1 1 0 1 1 ; ps1sf2968 10 3 3 1 1 1 0 0 1 ; ps1sf3090 8 1 1 1 1 1 1 1 1 ; ps1sf3133 15 5 5 1 1 1 0 1 1 ; ps1sf3162 8 1 1 1 1 1 1 1 1 ; ps1sf3169 6 1 1 1 1 1 0 0 1 ; ps1sf3186 9 2 2 1 1 1 0 1 1 ; ps1sf3219 11 3 3 1 1 1 0 1 1 ; ps1sf3237 8 2 2 1 1 1 0 0 1 ; ps1sf3255 9 2 2 1 1 1 0 1 1 ; ps1sf3294 7 1 1 1 1 1 0 1 1 ; ps1sf3303 7 1 1 1 1 1 0 1 1 ; ps1sf3358 15 5 5 1 1 1 0 1 1 ; ps1sf3406 12 4 4 1 1 1 0 0 1 ; ps1sf3442 11 3 3 1 1 1 0 1 1 ; ps1sf3472 11 3 3 1 1 1 0 1 1 ; ps1sf3500 13 4 4 1 1 1 0 1 1 ; ps1sf3557 14 4 4 1 1 1 1 1 1 ; ps1sf3660 7 2 2 0 1 0 0 1 1 ; ps1sf3702 7 1 1 1 1 1 0 1 1 ; ps1sf3744 8 1 1 1 1 1 1 1 1 ; ps1sf3756 9 2 2 1 1 1 0 1 1 ; ps1sf3790 6 1 1 0 1 1 0 1 1 ; ps1sf43 115 22 22 14 14 14 3 12 14 ; ps1sf630 7 1 1 0 1 1 1 1 1 ; Host name baobab.eead.csic.es ; Job started 2020-01-16.231005 ; Job done 2020-01-17.045934 ; Seconds 87.09 ; user 87.09 ; system 2.62 ; cuser 20758.68 ; csystem 165.68