; parse-gtf -v 2 -i $RSAT/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.gtf -fasta $RSAT/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.pep.all.fa -org_name Ananas_comosus.F153.49 -task all -taxid 4615 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Ananas_comosus.F153.49/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.gtf ; fasta /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Ananas_comosus.F153.49/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Ananas_comosus.F153.49/genome/Ananas_comosus.F153.49_exon.gtf ; Parsed rows per feature type ; 26781 ; biological_region 4523 ; cds 135572 ; exon 141846 ; five_prime_utr 2877 ; gene 26730 ; mrna 26730 ; supercontig 25 ; three_prime_utr 2826 ; Parsed rows per contig ; Contig Total biological_region cds exon five_prime_utr gene mrna supercontig three_prime_utr ; ### 26755 26755 0 0 0 0 0 0 0 0 ; ##gff-version 3 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig1 1 10526087 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig10 1 13841220 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig11 1 13111882 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig12 1 13096602 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig13 1 12612916 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig14 1 11759050 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig15 1 11705410 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig16 1 11365259 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig17 1 11173865 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig18 1 11156013 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig19 1 10911667 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig2 1 14354112 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig20 1 10815949 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig21 1 10792163 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig22 1 10645013 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig23 1 10398409 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig24 1 7979763 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig25 1 11423228 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig3 1 17334668 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig4 1 16781886 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig5 1 15584300 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig6 1 15024279 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig7 1 14747216 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig8 1 14728524 1 1 0 0 0 0 0 0 0 0 ; ##sequence-region contig9 1 13969523 1 1 0 0 0 0 0 0 0 0 ; contig1 10277 0 153 4058 4258 99 806 806 1 96 ; contig10 16008 0 160 6462 6657 105 1253 1253 1 117 ; contig11 12206 0 239 4754 4980 119 997 997 1 119 ; contig12 12008 0 191 4670 4916 98 1014 1014 1 104 ; contig13 15769 0 161 6451 6672 104 1148 1148 1 84 ; contig14 10736 0 183 4193 4356 115 895 895 1 98 ; contig15 14194 0 172 5806 5981 112 1011 1011 1 100 ; contig16 12409 0 156 4929 5133 100 990 990 1 110 ; contig17 11244 0 160 4530 4687 76 839 839 1 112 ; contig18 12283 0 137 4947 5121 93 951 951 1 82 ; contig19 12242 0 116 4933 5119 88 946 946 1 93 ; contig2 16335 0 227 6492 6862 158 1236 1236 1 123 ; contig20 10875 0 180 4277 4495 98 849 849 1 126 ; contig21 10670 0 182 4102 4429 92 893 893 1 78 ; contig22 11083 0 139 4355 4604 123 881 881 1 99 ; contig23 11694 0 157 4685 4910 111 871 871 1 88 ; contig24 9534 0 96 3839 3996 88 709 709 1 96 ; contig25 12321 0 197 4852 5115 114 977 977 1 88 ; contig3 16981 0 234 6700 7061 131 1365 1365 1 124 ; contig4 17640 0 251 6956 7274 134 1441 1441 1 142 ; contig5 18786 0 221 7415 7767 178 1516 1516 1 172 ; contig6 17595 0 203 7015 7366 114 1363 1363 1 170 ; contig7 15343 0 214 6072 6370 139 1201 1201 1 145 ; contig8 16793 0 200 6660 6950 164 1330 1330 1 158 ; contig9 16103 0 194 6419 6767 124 1248 1248 1 102 ; Host name baobab.eead.csic.es ; Job started 2020-12-01.130253 ; Job done 2020-12-01.164459 ; Seconds 50.32 ; user 50.32 ; system 2.2 ; cuser 13205.14 ; csystem 107.63