; parse-gtf  -v 2 -i $RSAT/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.gtf -fasta $RSAT/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.pep.all.fa -org_name Arachis_hypogaea.Tifrunnergnm2J5K5.60 -task all -taxid 3818 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome
; Program version       	1.48
; Input files
;	gtf          	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.gtf
;	fasta_rm     	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.dna_rm.genome.fa
;	fasta        	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.dna.toplevel.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.pep.all.fa
; Output files
;	gene_gtf     	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_gene.gtf
;	tss_gtf      	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_tss.gtf
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_start_codon.gtf
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_five_prime_utr.gtf
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.pep.all_lengths.tab
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.dna_rm.genome_lengths.tab
;	cds          	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/cds.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/start_codon.tab
;	fasta_lengths	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60.dna.toplevel_lengths.tab
;	tts_gtf      	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_tts.gtf
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/contigs.txt
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/contigs_rm.txt
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/stop_codon.tab
;	gene         	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/gene.tab
;	transcript_gtf	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_transcript.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_gene_end.gtf
;	exon_gtf     	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_exon.gtf
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_gene_start.gtf
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/peptidic_sequences.fasta
;	organism     	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/organism.tab
;	log          	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/log.txt
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_stop_codon.gtf
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/transcript.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/contig.tab
;	exon         	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/exon.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/Arachis_hypogaea.Tifrunnergnm2J5K5.60_three_prime_utr.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Arachis_hypogaea.Tifrunnergnm2J5K5.60/genome/contig_rm.tab
; Parsed rows per feature type
;	cds          	386963
;	exon         	419272
;	five_prime_utr	65554
;	gene         	83107
;	start_codon  	76295
;	stop_codon   	77707
;	three_prime_utr	61133
;	transcript   	83107
; Parsed rows per contig
;	Contig       	Total	cds	exon	five_prime_utr	gene	start	stop	three_prime_utr	transcript
;	CM064396.1   	58088	18103	19513	3071	3784	3483	3551	2799	3784
;	CM064397.1   	50896	15210	16802	2688	3508	3214	3276	2690	3508
;	CM064398.1   	81769	25571	27684	4430	5176	4801	4901	4030	5176
;	CM064399.1   	57269	17519	18958	2992	3908	3543	3633	2808	3908
;	CM064400.1   	63865	19790	21453	3359	4165	3841	3881	3211	4165
;	CM064401.1   	62191	19328	20988	3353	3981	3632	3746	3182	3981
;	CM064402.1   	44703	13807	14872	2351	2992	2763	2804	2122	2992
;	CM064403.1   	52775	16498	17934	3044	3258	3023	3066	2694	3258
;	CM064404.1   	59467	18431	19982	3174	3880	3565	3634	2921	3880
;	CM064405.1   	53847	16614	17953	2809	3580	3276	3318	2717	3580
;	CM064406.1   	60092	18615	20153	3035	3988	3665	3733	2915	3988
;	CM064407.1   	57110	17244	18877	2922	3956	3607	3702	2846	3956
;	CM064408.1   	86593	26995	29153	4650	5547	5142	5250	4309	5547
;	CM064409.1   	64240	19553	21242	3314	4436	4069	4142	3048	4436
;	CM064410.1   	69382	21491	23147	3533	4637	4241	4306	3390	4637
;	CM064411.1   	68627	21440	23097	3428	4527	4184	4245	3179	4527
;	CM064412.1   	60230	18484	20020	3090	4110	3752	3822	2842	4110
;	CM064413.1   	59235	18485	20043	2949	3920	3574	3609	2735	3920
;	CM064414.1   	70006	21642	23407	3626	4692	4276	4355	3316	4692
;	CM064415.1   	64976	19927	21644	3530	4337	3975	4040	3186	4337
;	PIVG02000030.1	66	16	20	7	5	5	5	3	5
;	PIVG02000053.1	102	30	40	3	4	4	4	13	4
;	PIVG02000056.1	18	7	7	0	1	1	1	0	1
;	PIVG02000072.1	10	3	3	0	1	1	1	0	1
;	PIVG02000078.1	78	27	27	2	5	5	5	2	5
;	PIVG02000079.1	78	21	23	6	7	6	4	4	7
;	PIVG02000080.1	2498	690	699	43	262	251	257	34	262
;	PIVG02000081.1	17	4	4	0	2	2	2	1	2
;	PIVG02000082.1	6	1	1	0	1	1	1	0	1
;	PIVG02000086.1	24	6	7	1	2	2	2	2	2
;	PIVG02000087.1	42	13	13	1	4	3	4	0	4
;	PIVG02000092.1	122	46	47	5	5	5	5	4	5
;	PIVG02000093.1	8	1	1	1	1	1	1	1	1
;	PIVG02000098.1	74	22	23	0	7	6	7	2	7
;	PIVG02000100.1	24	3	4	3	3	2	2	4	3
;	PIVG02000101.1	662	175	178	9	74	72	73	7	74
;	PIVG02000104.1	76	15	24	4	6	5	6	10	6
;	PIVG02000105.1	19	5	5	0	2	2	2	1	2
;	PIVG02000106.1	73	15	19	7	7	6	7	5	7
;	PIVG02000107.1	13	5	5	0	1	1	0	0	1
;	PIVG02000108.1	61	25	25	0	3	3	2	0	3
;	PIVG02000109.1	117	29	32	4	13	11	11	4	13
;	PIVG02000110.1	66	17	20	5	5	5	5	4	5
;	PIVG02000113.1	91	26	28	6	7	7	7	3	7
;	PIVG02000114.1	22	5	5	0	3	3	3	0	3
;	PIVG02000115.1	99	29	31	6	7	7	7	5	7
;	PIVG02000116.1	10	3	3	0	1	1	1	0	1
;	PIVG02000117.1	102	35	35	0	8	8	8	0	8
;	PIVG02000118.1	106	25	45	4	9	6	7	1	9
;	PIVG02000119.1	99	33	34	5	6	6	5	4	6
;	PIVG02000120.1	22	8	8	0	2	1	1	0	2
;	PIVG02000124.1	20	7	7	1	1	1	1	1	1
;	PIVG02000125.1	130	33	34	2	15	15	15	1	15
;	PIVG02000126.1	83	21	22	2	9	8	9	3	9
;	PIVG02000128.1	118	41	42	1	8	7	8	3	8
;	PIVG02000129.1	14	5	5	0	1	1	1	0	1
;	PIVG02000131.1	53	15	15	2	5	5	5	1	5
;	PIVG02000133.1	33	10	10	1	3	2	3	1	3
;	PIVG02000134.1	178	46	46	4	20	19	19	4	20
;	PIVG02000135.1	14	5	5	0	1	1	1	0	1
;	PIVG02000136.1	90	34	34	3	4	4	4	3	4
;	PIVG02000138.1	72	23	26	0	6	5	5	1	6
;	PIVG02000139.1	13	4	4	0	1	1	1	1	1
;	PIVG02000146.1	55	19	19	0	4	4	4	1	4
;	PIVG02000147.1	21	4	10	0	3	1	0	0	3
;	PIVG02000148.1	5	0	3	0	1	0	0	0	1
;	PIVG02000149.1	61	20	22	3	4	3	4	1	4
;	PIVG02000150.1	7	2	2	0	1	0	1	0	1
;	PIVG02000151.1	22	5	5	1	3	2	3	0	3
;	PIVG02000157.1	90	28	28	1	8	8	8	1	8
;	PIVG02000158.1	36	7	10	1	4	2	3	5	4
;	PIVG02000159.1	36	10	10	0	4	4	4	0	4
;	PIVG02000160.1	55	19	20	2	4	4	2	0	4
;	PIVG02000161.1	68	16	17	2	8	7	8	2	8
;	PIVG02000162.1	11	3	3	0	1	1	1	1	1
;	PIVG02000163.1	63	21	23	2	4	4	4	1	4
;	PIVG02000164.1	64	18	18	0	7	7	7	0	7
;	PIVG02000166.1	52	16	16	0	5	5	5	0	5
;	PIVG02000172.1	16	6	6	0	1	1	1	0	1
;	PIVG02000173.1	64	18	18	0	7	7	7	0	7
;	PIVG02000175.1	20	6	7	2	1	1	1	1	1
;	PIVG02000177.1	11	3	3	1	1	0	1	1	1
;	PIVG02000178.1	18	5	6	1	1	1	1	2	1
;	PIVG02000182.1	9	3	3	0	1	0	1	0	1
;	PIVG02000186.1	88	24	31	7	6	5	6	3	6
;	PIVG02000187.1	16	3	3	1	2	2	2	1	2
;	PIVG02000189.1	64	18	18	0	7	6	7	1	7
;	PIVG02000192.1	26	8	8	0	3	2	2	0	3
;	PIVG02000195.1	18	5	5	0	2	2	2	0	2
;	PIVG02000197.1	55	17	17	1	5	5	5	0	5
;	PIVG02000199.1	16	4	5	2	1	1	1	1	1
;	PIVG02000203.1	15	4	4	0	2	1	2	0	2
;	PIVG02000207.1	52	16	16	0	5	5	5	0	5
;	PIVG02000209.1	10	3	3	0	1	1	1	0	1
;	PIVG02000211.1	8	1	1	1	1	1	1	1	1
;	PIVG02000215.1	34	9	9	0	4	4	4	0	4
;	PIVG02000216.1	24	6	6	0	3	3	3	0	3
;	PIVG02000229.1	6	1	1	0	1	1	1	0	1
;	PIVG02000232.1	26	5	6	2	3	3	3	1	3
;	PIVG02000236.1	26	10	10	1	1	1	1	1	1
;	PIVG02000238.1	58	17	17	0	6	6	6	0	6
;	PIVG02000239.1	11	3	3	1	1	0	1	1	1
;	PIVG02000240.1	8	2	2	0	1	1	1	0	1
;	PIVG02000243.1	22	7	7	0	2	2	2	0	2
;	PIVG02000244.1	26	10	10	1	1	1	1	1	1
;	PIVG02000245.1	9	3	3	0	1	0	1	0	1
;	PIVG02000246.1	46	16	16	1	3	3	3	1	3
;	PIVG02000247.1	18	5	5	0	2	2	2	0	2
;	PIVG02000248.1	10	1	2	2	1	1	1	1	1
;	PIVG02000250.1	11	2	3	2	1	1	0	1	1
;	PIVG02000251.1	26	9	10	1	1	1	1	2	1
;	PIVG02000253.1	6	1	1	1	1	1	0	0	1
;	PIVG02000255.1	29	8	8	1	3	2	3	1	3
;	PIVG02000260.1	34	13	13	0	2	2	2	0	2
;	PIVG02000262.1	24	10	10	0	1	1	1	0	1
;	PIVG02000266.1	46	18	18	1	2	1	2	2	2
;	PIVG02000272.1	10	3	3	0	1	1	1	0	1
;	PIVG02000273.1	48	7	21	15	1	1	1	1	1
;	PIVG02000279.1	26	7	7	0	3	3	3	0	3
;	PIVG02000280.1	16	6	6	0	1	1	1	0	1
;	PIVG02000292.1	22	4	8	1	1	1	1	5	1
;	PIVG02000318.1	8	2	2	0	1	1	1	0	1
;	PIVG02000329.1	10	2	2	1	1	1	1	1	1
;	PIVG02000336.1	19	6	6	0	2	1	2	0	2
;	PIVG02000337.1	11	3	3	0	1	1	1	1	1
;	PIVG02000340.1	13	4	4	0	1	1	1	1	1
;	PIVG02000341.1	30	8	8	1	3	2	3	2	3
;	PIVG02000343.1	28	8	8	0	3	3	3	0	3
;	PIVG02000355.1	36	16	16	0	1	1	1	0	1
;	PIVG02000357.1	7	1	1	1	1	1	0	1	1
;	PIVG02000363.1	32	13	13	1	1	1	1	1	1
;	PIVG02000366.1	17	4	5	0	2	0	2	2	2
;	PIVG02000369.1	37	11	11	1	3	3	3	2	3
;	PIVG02000378.1	28	8	8	0	3	3	3	0	3
;	PIVG02000381.1	30	10	10	1	2	1	2	2	2
;	PIVG02000382.1	9	2	2	1	1	0	1	1	1
;	PIVG02000383.1	20	7	7	1	1	1	1	1	1
;	PIVG02000394.1	15	3	3	1	2	2	1	1	2
;	PIVG02000400.1	22	8	8	1	1	1	1	1	1
;	PIVG02000441.1	8	1	2	0	1	0	1	2	1
; Host name	baobab
; Job started	2024-12-10.174023
; Job done	2024-12-10.185742
; Seconds	191.3
;	user	191.3
;	system	25.42
;	cuser	6987.11
;	csystem	369.07