; parse-gtf -v 2 -i $RSAT/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.gtf -fasta $RSAT/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.pep.all.fa -org_name Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40 -task all -taxid 15368 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.gtf ; fasta /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40/genome/Brachypodium_distachyon.Brachypodium_distachyon_v3.0.40_exon.gtf ; Parsed rows per feature type ; cds 285956 ; exon 286042 ; five_prime_utr 38290 ; gene 34310 ; start_codon 52056 ; stop_codon 26053 ; three_prime_utr 40119 ; transcript 52972 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 236513 83184 83212 11049 9916 14954 7509 11497 15192 ; 2 188979 66852 66875 8819 7631 11805 5810 9213 11974 ; 3 182467 64280 64296 8418 7573 11496 5786 8884 11734 ; 4 131649 45345 45357 6303 5859 8766 4401 6658 8960 ; 5 76052 26257 26264 3694 3324 5020 2538 3859 5096 ; Bd1_centromere_containing_Bradi1g41430 61 18 18 2 2 7 4 3 7 ; KZ622971 50 12 12 5 2 6 2 5 6 ; KZ622972 6 1 1 0 1 1 1 0 1 ; KZ622973 12 4 4 0 1 1 1 0 1 ; KZ622974 9 3 3 0 1 0 1 0 1 ; Host name baobab.eead.csic.es ; Job started 2018-09-13.052949 ; Job done 2018-09-13.092303 ; Seconds 74.77 ; user 74.77 ; system 20.46 ; cuser 13536.23 ; csystem 352.4