The raw contigs FASTA file, the GTF annotations and the peptide sequences were downloaded from:

https://chi.mpipz.mpg.de/index.html

The hard-masked FASTA file was produced with 

~/github/plant-scripts/repeats/Red2Ensembl.py --msk_file chi_v1.rm.fa chi_v1.fa chi 

#Genome length: 198654690 - Repeats length: 70437381 - Repeats content: 35.4572%

and then converted and sorted with the following Perl script:

perl -lne 'if(!/^>/){ s/[a-z]/N/g } print' chi_v1.rm.fa 

The rest of files were produced by RSAT-Tools to install this genome as explained at

https://rsa-tools.github.io/managing-RSAT/genome_installation/install_organisms_FASTA_GTF.html