; parse-gtf -v 2 -i $RSAT/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.gtf -fasta $RSAT/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.pep.all.fa -org_name Cardamine_hirsuta.Ox.v1.0.MPI -task all -taxid 50463 -gtf_source MPI -o $RSAT/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.dna_rm.genome.fa ; fasta_pep /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.pep.all.fa ; fasta /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.dna.toplevel.fa ; gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.gtf ; Output files ; transcript /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_gene_start.gtf ; tts_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_tts.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/contigs_rm.txt ; log /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/log.txt ; cds /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/cds.tab ; gene /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/gene.tab ; organism /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/organism.tab ; exon /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/exon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.pep.all_lengths.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_stop_codon.gtf ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_three_prime_utr.gtf ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.dna_rm.genome_lengths.tab ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_five_prime_utr.gtf ; tss_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/stop_codon.tab ; gene_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_gene.gtf ; start_codon /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/start_codon.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/contig_rm.tab ; gene_end_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_gene_end.gtf ; start_codon_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_start_codon.gtf ; contig /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/contig.tab ; fasta_lengths /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI.dna.toplevel_lengths.tab ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/peptidic_sequences.fasta ; exon_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_exon.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Cardamine_hirsuta.Ox.v1.0.MPI/genome/Cardamine_hirsuta.Ox.v1.0.MPI_transcript.gtf ; Parsed rows per feature type ; cds 195746 ; exon 218647 ; gene 29458 ; mrna 37997 ; Parsed rows per contig ; Contig Total cds exon gene mrna ; C761068 8 3 3 1 1 ; C761200 4 1 1 1 1 ; C763400 12 4 4 2 2 ; C764644 12 5 5 1 1 ; C766642 4 1 1 1 1 ; C774870 10 4 4 1 1 ; C780470 12 5 5 1 1 ; C785012 22 10 10 1 1 ; C785722 19 7 7 2 3 ; Chr1 79714 32702 36448 4597 5967 ; Chr2 46433 18587 21240 2876 3730 ; Chr3 62007 25505 28085 3688 4729 ; Chr4 52923 21513 24048 3183 4179 ; Chr5 45647 18339 20499 2995 3814 ; Chr6 67012 27414 30618 3888 5092 ; Chr7 58911 24087 26677 3556 4591 ; Chr8 53452 21577 24160 3388 4327 ; ChrC 366 107 107 76 76 ; ChrM 441 123 126 96 96 ; NSCAFA.1004 10 4 4 1 1 ; NSCAFA.1017 8 3 3 1 1 ; NSCAFA.1034 8 3 3 1 1 ; NSCAFA.1045 10 3 3 2 2 ; NSCAFA.1057 7 2 3 1 1 ; NSCAFA.1116 18 7 7 2 2 ; NSCAFA.1137I 9 2 3 2 2 ; NSCAFA.1153 4 1 1 1 1 ; NSCAFA.1157 15 6 6 1 2 ; NSCAFA.1162 10 4 4 1 1 ; NSCAFA.1175 6 2 2 1 1 ; NSCAFA.1178 4 1 1 1 1 ; NSCAFA.1185 6 2 2 1 1 ; NSCAFA.124I 686 255 306 55 70 ; NSCAFA.1313 6 2 2 1 1 ; NSCAFA.1446 6 2 2 1 1 ; NSCAFA.1512 6 2 2 1 1 ; NSCAFA.1517 8 3 3 1 1 ; NSCAFA.1544 6 2 2 1 1 ; NSCAFA.157 99 39 42 8 10 ; NSCAFA.1618 13 4 5 2 2 ; NSCAFA.1667 4 1 1 1 1 ; NSCAFA.1735 4 1 1 1 1 ; NSCAFA.174I 183 71 81 13 18 ; NSCAFA.185 110 43 46 10 11 ; NSCAFA.187 64 21 25 9 9 ; NSCAFA.188 134 52 55 13 14 ; NSCAFA.193 568 226 277 28 37 ; NSCAFA.1956 6 2 2 1 1 ; NSCAFA.1966 10 3 3 2 2 ; NSCAFA.214I 986 394 433 72 87 ; NSCAFA.2204 6 2 2 1 1 ; NSCAFA.2210I 8 3 3 1 1 ; NSCAFA.226I 16 5 5 3 3 ; NSCAFA.230 206 68 77 29 32 ; NSCAFA.294 110 42 50 8 10 ; NSCAFA.295 184 63 90 14 17 ; NSCAFA.300 131 54 57 8 12 ; NSCAFA.304 291 113 115 29 34 ; NSCAFA.309 103 44 45 7 7 ; NSCAFA.326 228 93 102 15 18 ; NSCAFA.330 60 21 26 6 7 ; NSCAFA.340II 87 27 32 14 14 ; NSCAFA.356 34 14 14 3 3 ; NSCAFA.359 30 14 14 1 1 ; NSCAFA.361I 27 10 11 3 3 ; NSCAFA.367 50 18 26 2 4 ; NSCAFA.373 15 3 8 1 3 ; NSCAFA.380 22 9 9 2 2 ; NSCAFA.383I 17 5 6 3 3 ; NSCAFA.384 45 14 16 7 8 ; NSCAFA.386 12 4 4 2 2 ; NSCAFA.392 65 25 29 5 6 ; NSCAFA.393 8 2 2 2 2 ; NSCAFA.395 155 63 66 10 16 ; NSCAFA.405 45 14 20 5 6 ; NSCAFA.408 87 27 43 6 11 ; NSCAFA.410 60 23 25 6 6 ; NSCAFA.413 10 3 3 2 2 ; NSCAFA.414 29 9 11 4 5 ; NSCAFA.416 16 4 4 4 4 ; NSCAFA.420 148 62 65 10 11 ; NSCAFA.423 4 1 1 1 1 ; NSCAFA.427 120 39 57 11 13 ; NSCAFA.435 26 7 7 6 6 ; NSCAFA.442 4 1 1 1 1 ; NSCAFA.444 4 1 1 1 1 ; NSCAFA.447I 47 13 14 10 10 ; NSCAFA.447II 6 2 2 1 1 ; NSCAFA.449 10 4 4 1 1 ; NSCAFA.461 5 1 2 1 1 ; NSCAFA.467 4 1 1 1 1 ; NSCAFA.480II 26 8 10 4 4 ; NSCAFA.489 42 16 16 5 5 ; NSCAFA.493 18 8 8 1 1 ; NSCAFA.494II 18 5 5 4 4 ; NSCAFA.497 115 50 52 5 8 ; NSCAFA.497I 4 1 1 1 1 ; NSCAFA.506 23 7 7 4 5 ; NSCAFA.516 22 7 7 4 4 ; NSCAFA.526 4 1 1 1 1 ; NSCAFA.527 24 8 9 3 4 ; NSCAFA.530 13 4 5 2 2 ; NSCAFA.537I 56 20 31 1 4 ; NSCAFA.539 39 14 14 5 6 ; NSCAFA.542 28 9 9 5 5 ; NSCAFA.555 61 24 29 3 5 ; NSCAFA.562 19 5 10 2 2 ; NSCAFA.572 14 6 6 1 1 ; NSCAFA.577 35 12 14 3 6 ; NSCAFA.580 16 5 5 3 3 ; NSCAFA.594 55 23 24 3 5 ; NSCAFA.595I 16 6 6 2 2 ; NSCAFA.603 6 2 2 1 1 ; NSCAFA.640 7 2 3 1 1 ; NSCAFA.642 38 15 16 3 4 ; NSCAFA.645 14 5 5 2 2 ; NSCAFA.648 32 12 14 3 3 ; NSCAFA.661 8 2 2 2 2 ; NSCAFA.667 85 36 41 3 5 ; NSCAFA.677I 35 13 13 4 5 ; NSCAFA.682 10 3 3 2 2 ; NSCAFA.685I 4 1 1 1 1 ; NSCAFA.690 24 9 9 3 3 ; NSCAFA.697 10 4 4 1 1 ; NSCAFA.717 15 6 7 1 1 ; NSCAFA.765 18 7 8 1 2 ; NSCAFA.766 8 3 3 1 1 ; NSCAFA.780 14 6 6 1 1 ; NSCAFA.781 8 2 2 2 2 ; NSCAFA.783 6 2 2 1 1 ; NSCAFA.792 10 4 4 1 1 ; NSCAFA.795 4 1 1 1 1 ; NSCAFA.798 4 1 1 1 1 ; NSCAFA.822 4 1 1 1 1 ; NSCAFA.825 4 1 1 1 1 ; NSCAFA.833 12 4 4 2 2 ; NSCAFA.836 12 5 5 1 1 ; NSCAFA.839 12 4 4 2 2 ; NSCAFA.846 10 4 4 1 1 ; NSCAFA.863 4 1 1 1 1 ; NSCAFA.865I 10 4 4 1 1 ; NSCAFA.880 4 1 1 1 1 ; NSCAFA.917 18 8 8 1 1 ; NSCAFA.924 10 4 4 1 1 ; NSCAFA.925 6 2 2 1 1 ; NSCAFA.927 38 16 16 2 4 ; NSCAFA.928 10 4 4 1 1 ; NSCAFA.929 4 1 1 1 1 ; NSCAFA.937 23 10 10 1 2 ; NSCAFA.958 4 1 1 1 1 ; NSCAFA.978 5 1 2 1 1 ; NSCAFA.979 6 2 2 1 1 ; NSCAFA.980I 12 5 5 1 1 ; NSCAFA.986 6 2 2 1 1 ; NSCAFA.994 8 3 3 1 1 ; NSCAFB.1015 8 2 2 2 2 ; NSCAFB.1026 33 15 15 1 2 ; NSCAFB.1027 4 1 1 1 1 ; NSCAFB.1060 16 7 7 1 1 ; NSCAFB.1119 4 1 1 1 1 ; NSCAFB.128 299 115 129 23 32 ; NSCAFB.1331 4 1 1 1 1 ; NSCAFB.1360 10 3 5 1 1 ; NSCAFB.1403 12 5 5 1 1 ; NSCAFB.1534 9 3 3 1 2 ; NSCAFB.1562 6 2 2 1 1 ; NSCAFB.1587 18 7 8 1 2 ; NSCAFB.163 1024 413 434 83 94 ; NSCAFB.1732 8 3 3 1 1 ; NSCAFB.1994 4 1 1 1 1 ; NSCAFB.2007 6 2 2 1 1 ; NSCAFB.255 24 9 9 3 3 ; NSCAFB.2605 8 3 3 1 1 ; NSCAFB.269 933 381 431 52 69 ; NSCAFB.271 903 367 437 39 60 ; NSCAFB.280 8 2 2 2 2 ; NSCAFB.315 125 50 55 9 11 ; NSCAFB.364 99 30 45 8 16 ; NSCAFB.442 6 2 2 1 1 ; NSCAFB.473 38 12 17 4 5 ; NSCAFB.482 16 7 7 1 1 ; NSCAFB.484 239 39 174 7 19 ; NSCAFB.538 8 3 3 1 1 ; NSCAFB.639 20 9 9 1 1 ; NSCAFB.687 34 14 14 2 4 ; NSCAFB.723 5 1 2 1 1 ; NSCAFB.757 4 1 1 1 1 ; NSCAFB.940 8 2 2 2 2 ; NSCAFC.101 180 62 75 20 23 ; NSCAFC.112 189 86 86 8 9 ; NSCAFC.115 395 158 178 26 33 ; NSCAFC.123 16 5 5 3 3 ; NSCAFC.147 12 5 5 1 1 ; NSCAFC.76 805 338 369 41 57 ; NSCAFC.98 186 67 81 16 22 ; scaffold1 12 4 4 2 2 ; scaffold1027 10 3 3 2 2 ; scaffold109 424 165 181 33 45 ; scaffold1152 4 1 1 1 1 ; scaffold1239 6 2 2 1 1 ; scaffold1251 32 14 15 1 2 ; scaffold1252 212 89 96 13 14 ; scaffold1271 1482 631 699 62 90 ; scaffold273 4 1 1 1 1 ; scaffold524 4 1 1 1 1 ; scaffold551 42 15 22 2 3 ; scaffold748 102 42 42 8 10 ; Host name baobab ; Job started 2025-10-28.201017 ; Job done 2025-10-28.203518 ; Seconds 27.14 ; user 27.14 ; system 1.23 ; cuser 2285.52 ; csystem 120.39