; parse-gtf -v 2 -i $RSAT/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.gtf -fasta $RSAT/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.pep.all.fa -org_name Citrus_clementina.Citrus_clementina_v1.0.46 -task all -taxid 85681 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.gtf ; fasta /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Citrus_clementina.Citrus_clementina_v1.0.46/genome/Citrus_clementina.Citrus_clementina_v1.0.46_exon.gtf ; Parsed rows per feature type ; cds 188429 ; exon 190650 ; five_prime_utr 19659 ; gene 27179 ; start_codon 32510 ; stop_codon 19103 ; three_prime_utr 20482 ; transcript 36736 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; KI535697 59593 21411 21606 2165 2712 3508 2039 2268 3884 ; KI535698 450 170 170 7 25 24 20 6 28 ; KI535699 3 0 1 0 1 0 0 0 1 ; KI535730 6 0 2 0 2 0 0 0 2 ; KI535751 45 13 13 1 5 4 4 0 5 ; KI535758 3 0 1 0 1 0 0 0 1 ; KI535763 7 2 2 0 1 0 1 0 1 ; KI535771 28 8 9 1 3 2 1 1 3 ; KI535794 6 0 2 0 2 0 0 0 2 ; KI535809 3 0 1 0 1 0 0 0 1 ; KI535823 6 0 2 0 2 0 0 0 2 ; KI535824 12 0 4 0 4 0 0 0 4 ; KI535832 12 0 4 0 4 0 0 0 4 ; KI535842 3 0 1 0 1 0 0 0 1 ; KI535868 3 0 1 0 1 0 0 0 1 ; KI535884 7 2 2 0 1 0 1 0 1 ; KI535885 3 0 1 0 1 0 0 0 1 ; KI535886 3 0 1 0 1 0 0 0 1 ; KI535887 90 25 26 2 10 8 8 1 10 ; KI535889 9 0 3 0 3 0 0 0 3 ; KI535893 3 0 1 0 1 0 0 0 1 ; KI535897 9 0 3 0 3 0 0 0 3 ; KI535900 3 0 1 0 1 0 0 0 1 ; KI535917 3 0 1 0 1 0 0 0 1 ; KI535931 3 0 1 0 1 0 0 0 1 ; KI535932 3 0 1 0 1 0 0 0 1 ; KI535940 6 0 2 0 2 0 0 0 2 ; KI535959 12 0 4 0 4 0 0 0 4 ; KI535999 3 0 1 0 1 0 0 0 1 ; KI536011 3 0 1 0 1 0 0 0 1 ; KI536014 6 0 2 0 2 0 0 0 2 ; KI536023 3 0 1 0 1 0 0 0 1 ; KI536049 3 0 1 0 1 0 0 0 1 ; KI536063 3 0 1 0 1 0 0 0 1 ; KI536082 3 0 1 0 1 0 0 0 1 ; KI536110 3 0 1 0 1 0 0 0 1 ; KI536115 3 0 1 0 1 0 0 0 1 ; KI536140 3 0 1 0 1 0 0 0 1 ; KI536146 9 0 3 0 3 0 0 0 3 ; KI536157 3 0 1 0 1 0 0 0 1 ; KI536170 3 0 1 0 1 0 0 0 1 ; KI536191 16 4 4 0 2 2 1 1 2 ; KI536195 3 0 1 0 1 0 0 0 1 ; KI536206 3 0 1 0 1 0 0 0 1 ; KI536214 3 0 1 0 1 0 0 0 1 ; KI536216 3 0 1 0 1 0 0 0 1 ; KI536229 3 0 1 0 1 0 0 0 1 ; KI536260 3 0 1 0 1 0 0 0 1 ; KI536270 12 0 4 0 4 0 0 0 4 ; KI536312 68522 23977 24281 2579 3547 4222 2461 2696 4759 ; KI536352 3 0 1 0 1 0 0 0 1 ; KI536401 3 0 1 0 1 0 0 0 1 ; KI536420 3 0 1 0 1 0 0 0 1 ; KI536424 3 0 1 0 1 0 0 0 1 ; KI536519 6 0 2 0 2 0 0 0 2 ; KI536632 38 11 12 1 4 3 3 0 4 ; KI536637 50 10 12 3 7 5 2 4 7 ; KI536639 17 5 5 1 2 1 0 1 2 ; KI536642 3 0 1 0 1 0 0 0 1 ; KI536643 32 4 8 1 7 3 1 1 7 ; KI536661 98875 35044 35378 3616 4915 5981 3489 3756 6696 ; KI536676 25 5 5 1 4 3 3 0 4 ; KI536682 47 14 14 1 5 3 5 0 5 ; KI536689 18 0 6 0 6 0 0 0 6 ; KI536706 25 8 8 0 3 2 1 0 3 ; KI536707 3 0 1 0 1 0 0 0 1 ; KI536714 7 1 1 1 1 1 0 1 1 ; KI536718 10 3 3 0 1 1 1 0 1 ; KI536726 56040 19789 20002 2115 2758 3403 1952 2200 3821 ; KI536727 3 0 1 0 1 0 0 0 1 ; KI536747 3 0 1 0 1 0 0 0 1 ; KI536761 9 0 3 0 3 0 0 0 3 ; KI536768 15 1 4 0 4 1 1 0 4 ; KI536770 24 0 8 0 8 0 0 0 8 ; KI536784 17 5 5 0 2 2 1 0 2 ; KI536789 45 5 10 3 9 4 2 3 9 ; KI536796 34 14 14 0 2 1 1 0 2 ; KI536799 65148 23025 23307 2328 3331 3902 2361 2433 4461 ; KI536803 29 6 7 0 5 4 2 0 5 ; KI536809 15 0 5 0 5 0 0 0 5 ; KI536810 13 3 3 0 2 2 1 0 2 ; KI536815 8 1 2 0 2 1 0 0 2 ; KI536831 6 1 1 0 1 1 1 0 1 ; KI536832 18 0 6 0 6 0 0 0 6 ; KI536835 50 21 21 0 2 2 1 1 2 ; KI536837 10 3 3 0 1 1 1 0 1 ; KI536847 14 2 3 0 3 2 1 0 3 ; KI536857 6 0 2 0 2 0 0 0 2 ; KI536861 46721 16285 16462 1802 2400 2923 1716 1867 3266 ; KI536869 32 4 8 0 7 3 2 1 7 ; KI536902 14 5 5 0 1 1 1 0 1 ; KI536925 47716 17118 17250 1656 2327 2827 1660 1732 3146 ; KI536941 22 6 6 2 2 2 2 0 2 ; KI536956 11 2 2 1 2 1 1 0 2 ; KI536971 9 2 2 1 1 1 0 1 1 ; KI536978 42667 14756 14975 1633 2315 2663 1576 1694 3055 ; KI536988 25 8 8 2 1 2 0 2 2 ; KI536990 25 9 9 0 2 1 2 0 2 ; KI537002 11 4 4 0 1 1 0 0 1 ; KI537010 21 4 5 0 4 3 1 0 4 ; KI537014 6 0 2 0 2 0 0 0 2 ; KI537016 12 0 4 0 4 0 0 0 4 ; KI537031 6 0 2 0 2 0 0 0 2 ; KI537036 47766 16618 16844 1733 2619 2978 1774 1811 3389 ; KI537040 3 0 1 0 1 0 0 0 1 ; KI537043 7 1 1 1 1 1 0 1 1 ; KI537058 9 2 2 1 1 1 1 0 1 ; KI537083 3 0 1 0 1 0 0 0 1 ; KI537084 18 6 6 1 2 1 0 0 2 ; KI537093 13 5 5 0 1 1 0 0 1 ; KI537094 6 1 1 0 1 1 1 0 1 ; Host name baobab.eead.csic.es ; Job started 2020-01-18.085038 ; Job done 2020-01-18.123109 ; Seconds 62.27 ; user 62.27 ; system 6.21 ; cuser 12993.44 ; csystem 211.18