; parse-gtf -v 2 -i $RSAT/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.gtf -fasta $RSAT/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.pep.all.fa -org_name Corylus_avellana.CavTom2PMs-1.0.55 -task all -taxid 13451 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome ; Program version 1.48 ; Input files ; fasta /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.dna.toplevel.fa ; fasta_rm /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.gtf ; fasta_pep /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.pep.all.fa ; Output files ; transcript /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/transcript.tab ; tts_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_tts.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_five_prime_utr.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_gene.gtf ; exon /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/exon.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_gene_end.gtf ; tss_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_tss.gtf ; log /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/log.txt ; transcript_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_transcript.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/cds.tab ; contig /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/contig.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/contig_rm.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_three_prime_utr.gtf ; stop_codon_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_stop_codon.gtf ; start_codon /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/start_codon.tab ; gene /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/gene.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.dna_rm.genome_lengths.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/contigs.txt ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/contigs_rm.txt ; start_codon_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_start_codon.gtf ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.pep.all_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55_exon.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/peptidic_sequences.fasta ; stop_codon /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/stop_codon.tab ; fasta_lengths /var/www/html/rsat/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/Corylus_avellana.CavTom2PMs-1.0.55.dna.toplevel_lengths.tab ; organism /var/www/html/rsat/public_html/data/genomes/Corylus_avellana.CavTom2PMs-1.0.55/genome/organism.tab ; Parsed rows per feature type ; cds 133541 ; exon 153511 ; five_prime_utr 32059 ; gene 27270 ; start_codon 25728 ; stop_codon 25726 ; three_prime_utr 28295 ; transcript 27270 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; ca1 64052 19064 21137 4720 3763 3708 3708 4189 3763 ; ca10 28275 8514 9478 2014 1645 1610 1610 1759 1645 ; ca11 28521 8698 9437 2032 1650 1631 1631 1792 1650 ; ca2 63457 18924 20840 4587 3785 3718 3718 4100 3785 ; ca3 49838 15099 16513 3586 2908 2865 2864 3095 2908 ; ca4 45376 13652 15046 3226 2670 2624 2624 2864 2670 ; ca5 43780 12970 14155 3232 2651 2618 2618 2885 2651 ; ca6 35605 10753 11886 2528 2077 2032 2032 2220 2077 ; ca7 43377 13264 14522 3062 2487 2446 2446 2663 2487 ; ca8 20458 3334 10473 880 1819 683 682 768 1819 ; ca9 30661 9269 10024 2192 1815 1793 1793 1960 1815 ; Host name baobab ; Job started 2022-12-18.001833 ; Job done 2022-12-18.041558 ; Seconds 41.94 ; user 41.94 ; system 3.9 ; cuser 14041.53 ; csystem 194.21