; parse-gtf -v 2 -i $RSAT/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.gtf -fasta $RSAT/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.pep.all.fa -org_name Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46 -task all -taxid 55577 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.gtf ; fasta /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46/genome/Dioscorea_rotundata.TDr96_F1_Pseudo_Chromosome_v1.0.46_exon.gtf ; Parsed rows per feature type ; cds 114951 ; exon 126059 ; five_prime_utr 13901 ; gene 19565 ; start_codon 18644 ; stop_codon 18980 ; three_prime_utr 14887 ; transcript 19565 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 15220 5005 5364 523 967 905 907 582 967 ; 10 14367 4776 5266 514 796 746 772 701 796 ; 11 9344 3055 3363 387 537 516 521 428 537 ; 12 14339 4790 5227 583 809 761 789 571 809 ; 13 16429 5326 5772 592 1055 1000 1029 600 1055 ; 14 14235 4802 5199 523 788 747 761 627 788 ; 15 15264 5093 5587 705 814 791 801 659 814 ; 16 16618 5507 6055 647 937 897 914 724 937 ; 17 15559 5216 5709 562 858 831 843 682 858 ; 18 16938 5564 6142 696 966 923 940 741 966 ; 19 14562 4947 5565 677 682 660 672 677 682 ; 2 17002 5545 6095 547 1073 1029 1038 602 1073 ; 20 9688 3313 3589 396 515 495 505 360 515 ; 21 6713 2197 2416 283 380 357 366 334 380 ; 3 15281 4932 5469 631 891 861 880 726 891 ; 4 26235 8787 9635 1117 1412 1365 1376 1131 1412 ; 5 32488 10868 11973 1384 1708 1638 1672 1537 1708 ; 6 20617 6958 7521 773 1168 1094 1112 823 1168 ; 7 14091 4582 5044 594 832 800 813 594 832 ; 8 25187 8302 9169 1079 1401 1318 1346 1171 1401 ; 9 16375 5386 5899 688 976 910 923 617 976 ; Host name baobab.eead.csic.es ; Job started 2020-01-16.185712 ; Job done 2020-01-16.230715 ; Seconds 63.98 ; user 63.98 ; system 2.36 ; cuser 14818.19 ; csystem 150.18