; Installing organism ; ------------------- ; ; Input parameters: ; data source ; organism short name Drosophila_melanogaster ; organism full name Drosophila melanogaster ; genome sequence format ; genome sequence file ; ; Output parameters: ; installation dir /home/rsa/rsa-tools/data/Drosophila_melanogaster ; genome sequence file /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Contigs_Drosophila_melanogaster.txt ; feature table /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Feature_Drosophila_melanogaster.tab ; synonyms /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Feature_names_Drosophila_melanogaster.tab ; ; Config files: ; RSA config /home/rsa//rsa-tools/perl-scripts/../RSA.config ; file to update /home/rsa//rsa-tools/perl-scripts/../RSA.config 2002_06_18.000308 coding-or-not -v -org Drosophila_melanogaster -return ncs,seq,cs ; Organism Drosophila melanogaster ; feature file /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_features.tab ; chromosome sequence file(s) ; AE002566 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002566.raw ; AE002575 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002575.raw ; AE002584 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002584.raw ; AE002593 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002593.raw ; AE002602 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002602.raw ; AE002620 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002620.raw ; AE002629 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002629.raw ; AE002638 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002638.raw ; AE002647 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002647.raw ; AE002681 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002681.raw ; AE002690 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002690.raw ; AE002699 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002699.raw ; AE002708 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002708.raw ; AE002725 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002725.raw ; AE002769 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002769.raw ; AE002778 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002778.raw ; AE002787 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002787.raw ; AE002796 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002796.raw ; AE002804 /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002804.raw ; ORFs in total ; chr length orfs ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002566.raw AE002566 10563131 1191 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002575.raw AE002575 4515408 709 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002584.raw AE002584 5076639 663 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002593.raw AE002593 9081174 1089 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002602.raw AE002602 15100598 1781 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002620.raw AE002620 1264544 123 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002629.raw AE002629 536387 28 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002638.raw AE002638 4860857 616 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002647.raw AE002647 2693032 319 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002681.raw AE002681 2159952 293 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002690.raw AE002690 16361557 1833 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002699.raw AE002699 1363555 148 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002708.raw AE002708 24252546 3108 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002725.raw AE002725 705981 50 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002769.raw AE002769 1361417 97 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002778.raw AE002778 509865 70 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002787.raw AE002787 13659330 1933 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002796.raw AE002796 751419 63 ; /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/AE002804.raw AE002804 403520 34 ; Job started 18/06/02 00:03:09 CEST ; Job done 18/06/02 00:05:00 CEST 2002_06_18.000500 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 1 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/1nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/1nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.001531 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 2 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/2nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/2nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.002607 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 3 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/3nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/3nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.003650 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 4 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/4nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/4nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.004746 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 5 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/5nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/5nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.010001 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 6 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/6nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/6nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.011643 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 7 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/7nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/7nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.013715 /home/rsa/rsa-tools/perl-scripts/oligo-analysis -1str -i /home/rsa/rsa-tools/data/Drosophila_melanogaster/genome/Drosophila_melanogaster_non_coding_segments.wc -format wc -1str -l 8 -type dna -return freq,occ -nogrouprc -o /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/8nt_non-coding_Drosophila_melanogaster-1str.freq ; gzip -f /home/rsa/rsa-tools/data/Drosophila_melanogaster/oligo-frequencies/8nt_non-coding_Drosophila_melanogaster-1str.freq 2002_06_18.020108 rm -f Drosophila_melanogaster_non_coding_segments.wc 2002_06_18.020108 rm -f Drosophila_melanogaster_non_coding_segments_purged.fasta 2002_06_18.020108 rm -f Drosophila_melanogaster_coding_segments.wc 2002_06_18.020108 rm -f Drosophila_melanogaster_coding_segments_purged.fasta 2002_06_18.020108 rm -f Drosophila_melanogaster_non_coding_segments.wc.gz 2002_06_18.020109 rm -f Drosophila_melanogaster_non_coding_segments_purged.fasta.gz 2002_06_18.020109 rm -f Drosophila_melanogaster_coding_segments.wc.gz 2002_06_18.020109 rm -f Drosophila_melanogaster_coding_segments_purged.fasta.gz