; parse-gtf  -v 2 -i $RSAT/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.gtf -fasta $RSAT/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.pep.all.fa -org_name Eragrostis_tef.Salk_teff_dabbi_3.0.60 -task all -taxid 110835 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome
; Program version       	1.48
; Input files
;	gtf          	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.gtf
;	fasta_rm     	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.dna_rm.genome.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.pep.all.fa
;	fasta        	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.dna.toplevel.fa
; Output files
;	exon_gtf     	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_exon.gtf
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.pep.all_lengths.tab
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/stop_codon.tab
;	tts_gtf      	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_tts.gtf
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/contigs.txt
;	fasta_lengths	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.dna.toplevel_lengths.tab
;	log          	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/log.txt
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/peptidic_sequences.fasta
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/transcript.tab
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_five_prime_utr.gtf
;	cds          	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/cds.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/start_codon.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_three_prime_utr.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_gene_end.gtf
;	gene_gtf     	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_gene.gtf
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60.dna_rm.genome_lengths.tab
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/contigs_rm.txt
;	organism     	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/organism.tab
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_gene_start.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/contig_rm.tab
;	exon         	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/exon.tab
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_stop_codon.gtf
;	gene         	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/gene.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/contig.tab
;	transcript_gtf	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_transcript.gtf
;	tss_gtf      	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_tss.gtf
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Eragrostis_tef.Salk_teff_dabbi_3.0.60/genome/Eragrostis_tef.Salk_teff_dabbi_3.0.60_start_codon.gtf
; Parsed rows per feature type
;	cds          	334660
;	exon         	337116
;	five_prime_utr	4349
;	gene         	66287
;	start_codon  	61953
;	stop_codon   	59477
;	three_prime_utr	2512
;	transcript   	66287
; Parsed rows per contig
;	Contig       	Total	cds	exon	five_prime_utr	gene	start	stop	three_prime_utr	transcript
;	10A          	30287	10526	10597	169	2346	2167	2052	84	2346
;	10B          	28723	10111	10207	106	2151	1988	1930	79	2151
;	1A           	73750	26697	26827	321	5135	4802	4642	191	5135
;	1B           	71021	25871	26079	355	4829	4518	4332	208	4829
;	2A           	62295	22409	22598	299	4398	4090	3930	173	4398
;	2B           	59576	21594	21771	289	4112	3821	3699	178	4112
;	3A           	64242	23327	23515	273	4415	4125	3968	204	4415
;	3B           	64588	23571	23764	304	4370	4089	3945	175	4370
;	4A           	60597	21921	22015	265	4224	3980	3820	148	4224
;	4B           	60061	21798	21981	314	4127	3880	3691	143	4127
;	5A           	38721	13619	13716	200	2899	2730	2557	101	2899
;	5B           	37587	13310	13372	161	2785	2611	2486	77	2785
;	6A           	30912	10667	10804	152	2409	2231	2131	109	2409
;	6B           	26008	9048	9117	111	1992	1873	1801	74	1992
;	7A           	42470	15232	15371	204	3006	2804	2717	130	3006
;	7B           	40657	14653	14751	168	2843	2679	2600	120	2843
;	8A           	32887	11578	11632	146	2464	2309	2211	83	2464
;	8B           	32293	11451	11540	157	2373	2212	2120	67	2373
;	9A           	38193	13709	13773	186	2736	2533	2446	74	2736
;	9B           	37773	13568	13686	169	2673	2511	2399	94	2673
; Host name	baobab
; Job started	2024-11-29.121815
; Job done	2024-11-29.131211
; Seconds	82.35
;	user	82.35
;	system	4.34
;	cuser	5156.86
;	csystem	247.13