; parse-gtf -v 2 -i $RSAT/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.gtf -fasta $RSAT/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.pep.all.fa -org_name Helianthus_annuus.HanXRQr2.0-SUNRISE.55 -task all -taxid 4232 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome ; Program version 1.48 ; Input files ; gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.gtf ; fasta_pep /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.pep.all.fa ; fasta /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.dna.toplevel.fa ; fasta_rm /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.dna_rm.genome.fa ; Output files ; exon_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_exon.gtf ; gene_start_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_gene_start.gtf ; organism /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/organism.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_start_codon.gtf ; stop_codon_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_stop_codon.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_gene_end.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_transcript.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/contigs_rm.txt ; gene_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_gene.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_five_prime_utr.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/cds.tab ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/peptidic_sequences.fasta ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/contigs.txt ; fasta_lengths /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/start_codon.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/contig_rm.tab ; exon /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/exon.tab ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.pep.all_lengths.tab ; gene /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/gene.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55.dna_rm.genome_lengths.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/log.txt ; contig /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/contig.tab ; tts_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_tts.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/stop_codon.tab ; transcript /var/www/html/rsat/public_html/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/transcript.tab ; tss_gtf /var/www/html/rsat/data/genomes/Helianthus_annuus.HanXRQr2.0-SUNRISE.55/genome/Helianthus_annuus.HanXRQr2.0-SUNRISE.55_tss.gtf ; Parsed rows per feature type ; cds 251537 ; exon 310826 ; five_prime_utr 63062 ; gene 83177 ; start_codon 70864 ; stop_codon 70857 ; three_prime_utr 62549 ; transcript 83177 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 55429 13966 17342 3601 4587 3903 3902 3541 4587 ; 10 58246 14836 18253 3727 4817 4096 4096 3604 4817 ; 11 63231 15815 19599 3878 5444 4627 4627 3797 5444 ; 12 55002 14037 17378 3554 4447 3806 3804 3529 4447 ; 13 63502 15590 19599 4056 5455 4658 4658 4031 5455 ; 14 62773 16178 19660 3883 5111 4414 4413 4003 5111 ; 15 62326 15762 19400 3911 5183 4459 4458 3970 5183 ; 16 66855 16871 20837 4259 5581 4740 4740 4246 5581 ; 17 62405 15555 19155 4026 5320 4563 4563 3903 5320 ; 2 47091 11660 14514 3018 4067 3413 3413 2939 4067 ; 3 61600 15653 19298 3749 5206 4380 4379 3729 5206 ; 4 64994 16576 20438 3960 5416 4613 4613 3962 5416 ; 5 54695 13791 17231 3550 4532 3787 3787 3485 4532 ; 6 50360 13015 15948 3193 4059 3504 3504 3078 4059 ; 7 45752 11342 14188 2980 3855 3279 3279 2974 3855 ; 8 52673 13226 16345 3355 4440 3763 3763 3341 4440 ; 9 69115 17664 21641 4362 5657 4859 4858 4417 5657 ; Host name baobab ; Job started 2022-12-19.023010 ; Job done 2022-12-20.034547 ; Seconds 201.33 ; user 201.33 ; system 26.46 ; cuser 89617.42 ; csystem 1099.44