; parse-gtf -v 2 -i $RSAT/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.gtf -fasta $RSAT/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.pep.all.fa -org_name Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52 -task all -taxid 112509 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome ; Program version 1.48 ; Input files ; fasta_pep /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.pep.all.fa ; gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.gtf ; fasta_rm /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.dna_rm.genome.fa ; fasta /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.dna.toplevel.fa ; Output files ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_five_prime_utr.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/stop_codon.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_three_prime_utr.gtf ; tss_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_tss.gtf ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.dna_rm.genome_lengths.tab ; cds /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/cds.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/contig_rm.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_gene_start.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_transcript.gtf ; exon /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/exon.tab ; exon_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_exon.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/peptidic_sequences.fasta ; start_codon /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/start_codon.tab ; log /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/log.txt ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/contigs.txt ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/contigs_rm.txt ; contig /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/contig.tab ; organism /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/organism.tab ; tts_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_tts.gtf ; stop_codon_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_stop_codon.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_gene_end.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.dna.toplevel_lengths.tab ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52.pep.all_lengths.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_start_codon.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52_gene.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/transcript.tab ; gene /var/www/html/rsat/public_html/data/genomes/Hordeum_vulgare.MorexV3_pseudomolecules_assembly.52/genome/gene.tab ; Parsed rows per feature type ; cds 164012 ; exon 169192 ; five_prime_utr 20442 ; gene 35826 ; start_codon 37962 ; stop_codon 37948 ; three_prime_utr 20207 ; transcript 37962 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1H 65243 20542 21139 2580 4437 4673 4670 2527 4675 ; 2H 85395 26707 27584 3410 5808 6161 6158 3409 6158 ; 3H 82304 26167 26981 3234 5398 5779 5776 3192 5777 ; 4H 63530 20242 20913 2591 4088 4375 4373 2573 4375 ; 5H 81072 25257 26104 3275 5559 5882 5883 3230 5882 ; 6H 62731 19666 20306 2399 4309 4566 4564 2353 4568 ; 7H 77805 24152 24883 2937 5507 5806 5804 2910 5806 ; CAJHDD010000001.1 146 43 45 4 13 13 13 2 13 ; CAJHDD010000002.1 30 7 7 2 3 3 3 2 3 ; CAJHDD010000003.1 34 15 15 0 1 1 1 0 1 ; CAJHDD010000007.1 86 14 14 1 14 14 14 1 14 ; CAJHDD010000008.1 294 59 59 0 44 44 44 0 44 ; CAJHDD010000013.1 32 10 10 0 3 3 3 0 3 ; CAJHDD010000020.1 88 17 17 1 13 13 13 1 13 ; CAJHDD010000023.1 128 28 28 0 18 18 18 0 18 ; CAJHDD010000026.1 63 20 20 2 4 5 5 2 5 ; CAJHDD010000029.1 126 27 27 0 18 18 18 0 18 ; CAJHDD010000030.1 12 3 3 1 1 1 1 1 1 ; CAJHDD010000033.1 24 5 5 1 3 3 3 1 3 ; CAJHDD010000036.1 124 26 26 0 18 18 18 0 18 ; CAJHDD010000038.1 122 25 25 0 18 18 18 0 18 ; CAJHDD010000041.1 86 17 17 0 13 13 13 0 13 ; CAJHDD010000043.1 100 30 30 0 10 10 10 0 10 ; CAJHDD010000045.1 90 37 37 0 4 4 4 0 4 ; CAJHDD010000046.1 100 20 20 0 15 15 15 0 15 ; CAJHDD010000048.1 102 21 21 0 15 15 15 0 15 ; CAJHDD010000055.1 86 17 17 0 13 13 13 0 13 ; CAJHDD010000059.1 40 12 12 0 4 4 4 0 4 ; CAJHDD010000060.1 86 17 17 0 13 13 13 0 13 ; CAJHDD010000061.1 68 14 14 0 10 10 10 0 10 ; CAJHDD010000066.1 68 14 14 0 10 10 10 0 10 ; CAJHDD010000070.1 76 16 16 0 11 11 11 0 11 ; CAJHDD010000074.1 85 18 18 1 12 12 12 0 12 ; CAJHDD010000076.1 100 22 22 0 14 14 14 0 14 ; CAJHDD010000079.1 98 21 21 0 14 14 14 0 14 ; CAJHDD010000080.1 78 33 33 0 3 3 3 0 3 ; CAJHDD010000081.1 80 16 16 0 12 12 12 0 12 ; CAJHDD010000084.1 74 15 15 0 11 11 11 0 11 ; CAJHDD010000087.1 58 13 13 0 8 8 8 0 8 ; CAJHDD010000088.1 50 14 14 1 5 5 5 1 5 ; CAJHDD010000090.1 106 23 23 0 15 15 15 0 15 ; CAJHDD010000093.1 24 8 8 0 2 2 2 0 2 ; CAJHDD010000094.1 30 5 5 0 5 5 5 0 5 ; CAJHDD010000098.1 49 9 10 0 8 7 7 0 8 ; CAJHDD010000099.1 66 15 15 0 9 9 9 0 9 ; CAJHDD010000100.1 60 12 12 0 9 9 9 0 9 ; CAJHDD010000103.1 18 3 3 0 3 3 3 0 3 ; CAJHDD010000104.1 16 4 4 0 2 2 2 0 2 ; CAJHDD010000106.1 32 14 14 0 1 1 1 0 1 ; CAJHDD010000108.1 94 21 21 0 13 13 13 0 13 ; CAJHDD010000111.1 48 10 10 0 7 7 7 0 7 ; CAJHDD010000112.1 64 14 14 0 9 9 9 0 9 ; CAJHDD010000114.1 68 14 14 0 10 10 10 0 10 ; CAJHDD010000119.1 26 11 11 0 1 1 1 0 1 ; CAJHDD010000120.1 66 15 15 0 9 9 9 0 9 ; CAJHDD010000125.1 38 11 11 0 4 4 4 0 4 ; CAJHDD010000128.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000129.1 66 15 15 0 9 9 9 0 9 ; CAJHDD010000135.1 12 4 4 0 1 1 1 0 1 ; CAJHDD010000140.1 90 37 37 0 4 4 4 0 4 ; CAJHDD010000143.1 68 14 14 0 10 10 10 0 10 ; CAJHDD010000145.1 72 15 15 1 10 10 10 1 10 ; CAJHDD010000147.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000150.1 12 3 3 1 1 1 1 1 1 ; CAJHDD010000151.1 12 4 4 0 1 1 1 0 1 ; CAJHDD010000154.1 44 10 10 0 6 6 6 0 6 ; CAJHDD010000158.1 26 5 5 0 4 4 4 0 4 ; CAJHDD010000159.1 32 6 6 0 5 5 5 0 5 ; CAJHDD010000165.1 52 22 22 0 2 2 2 0 2 ; CAJHDD010000169.1 34 7 7 0 5 5 5 0 5 ; CAJHDD010000170.1 38 7 7 0 6 6 6 0 6 ; CAJHDD010000176.1 70 15 15 0 10 10 10 0 10 ; CAJHDD010000183.1 48 10 10 0 7 7 7 0 7 ; CAJHDD010000193.1 56 12 12 0 8 8 8 0 8 ; CAJHDD010000194.1 46 11 11 0 6 6 6 0 6 ; CAJHDD010000196.1 68 14 14 0 10 10 10 0 10 ; CAJHDD010000200.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000205.1 18 3 3 0 3 3 3 0 3 ; CAJHDD010000206.1 38 9 9 0 5 5 5 0 5 ; CAJHDD010000210.1 36 8 8 0 5 5 5 0 5 ; CAJHDD010000214.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000215.1 44 10 10 0 6 6 6 0 6 ; CAJHDD010000223.1 12 2 2 0 2 2 2 0 2 ; CAJHDD010000225.1 34 7 7 0 5 5 5 0 5 ; CAJHDD010000226.1 36 8 8 0 5 5 5 0 5 ; CAJHDD010000231.1 12 4 4 0 1 1 1 0 1 ; CAJHDD010000233.1 28 6 6 0 4 4 4 0 4 ; CAJHDD010000234.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000235.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000239.1 64 14 14 0 9 9 9 0 9 ; CAJHDD010000242.1 36 8 8 0 5 5 5 0 5 ; CAJHDD010000244.1 14 3 3 0 2 2 2 0 2 ; CAJHDD010000245.1 12 2 2 0 2 2 2 0 2 ; CAJHDD010000248.1 10 3 3 0 1 1 1 0 1 ; CAJHDD010000250.1 14 3 3 0 2 2 2 0 2 ; CAJHDD010000251.1 42 9 9 0 6 6 6 0 6 ; CAJHDD010000252.1 34 7 7 0 5 5 5 0 5 ; CAJHDD010000261.1 32 6 6 0 5 5 5 0 5 ; CAJHDD010000264.1 20 4 4 0 3 3 3 0 3 ; CAJHDD010000267.1 44 10 10 0 6 6 6 0 6 ; CAJHDD010000274.1 36 8 8 0 5 5 5 0 5 ; CAJHDD010000275.1 70 15 15 0 10 10 10 0 10 ; CAJHDD010000279.1 36 8 8 0 5 5 5 0 5 ; CAJHDD010000281.1 12 2 2 0 2 2 2 0 2 ; Host name baobab ; Job started 2021-12-20.102103 ; Job done 2021-12-21.185222 ; Seconds 241 ; user 241 ; system 34.71 ; cuser 114874.02 ; csystem 1748.06