; parse-gtf  -v 2 -i $RSAT/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.gtf -fasta $RSAT/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.pep.all.fa -org_name Ipomoea_triloba.ASM357664v1.46 -task all -taxid 35885 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome
; Program version       	1.48
; Input files
;	fasta_rm     	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.dna_rm.genome.fa
;	gtf          	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.gtf
;	fasta        	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.dna.toplevel.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.pep.all.fa
; Output files
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/peptidic_sequences.fasta
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/contigs_rm.txt
;	tts_gtf      	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_tts.gtf
;	gene_gtf     	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_gene.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/contig_rm.tab
;	gene         	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/gene.tab
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_stop_codon.gtf
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/transcript.tab
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_gene_start.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_gene_end.gtf
;	cds          	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/cds.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_three_prime_utr.gtf
;	log          	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/log.txt
;	exon         	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/exon.tab
;	organism     	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/organism.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/contig.tab
;	tss_gtf      	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_tss.gtf
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/stop_codon.tab
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_start_codon.gtf
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_five_prime_utr.gtf
;	transcript_gtf	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_transcript.gtf
;	fasta_lengths	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.dna.toplevel_lengths.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/start_codon.tab
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/contigs.txt
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.pep.all_lengths.tab
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46.dna_rm.genome_lengths.tab
;	exon_gtf     	/var/www/html/rsat/data/genomes/Ipomoea_triloba.ASM357664v1.46/genome/Ipomoea_triloba.ASM357664v1.46_exon.gtf
; Parsed rows per feature type
;	cds          	269045
;	exon         	287802
;	five_prime_utr	45381
;	gene         	31418
;	start_codon  	47064
;	stop_codon   	46978
;	three_prime_utr	41457
;	transcript   	47083
; Parsed rows per contig
;	Contig       	Total	cds	exon	five_prime_utr	gene	start	stop	three_prime_utr	transcript
;	1            	77498	25995	27635	4111	2918	4357	4346	3787	4349
;	10           	51941	17278	18431	2815	1991	2956	2954	2563	2953
;	11           	48466	16120	17165	2598	1817	2781	2773	2436	2776
;	12           	56229	18261	19530	3308	2270	3320	3322	2896	3322
;	13           	45520	14641	15666	2498	1923	2796	2789	2410	2797
;	14           	41831	13640	14629	2376	1636	2460	2458	2174	2458
;	15           	46494	15376	16396	2538	1860	2684	2683	2274	2683
;	16           	453	55	196	4	75	20	20	5	78
;	2            	58946	19576	21118	3378	2033	3233	3229	3147	3232
;	3            	64140	21108	22566	3662	2414	3685	3670	3351	3684
;	4            	68843	22628	24166	3777	2712	4029	4025	3479	4027
;	5            	57156	18796	20147	3214	2184	3294	3295	2931	3295
;	6            	52013	17176	18394	2900	1985	2987	2981	2604	2986
;	7            	49232	16208	17387	2731	1908	2835	2829	2498	2836
;	8            	36591	12239	13062	2043	1319	2067	2045	1770	2046
;	9            	60875	19948	21314	3428	2373	3560	3559	3132	3561
; Host name	baobab.eead.csic.es
; Job started	2020-01-19.061116
; Job done	2020-01-19.111612
; Seconds	96.79
;	user	96.79
;	system	22.82
;	cuser	18009.37
;	csystem	208.19