; parse-gtf -v 2 -i $RSAT/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.gtf -fasta $RSAT/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.pep.all.fa -org_name Lolium_perenne.MPB_Lper_Kyuss_1697.55 -task all -taxid 4522 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome ; Program version 1.48 ; Input files ; fasta /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.dna.toplevel.fa ; gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.gtf ; fasta_pep /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.pep.all.fa ; fasta_rm /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.dna_rm.genome.fa ; Output files ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.dna_rm.genome_lengths.tab ; tss_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/stop_codon.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/contig_rm.tab ; exon_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_exon.gtf ; tts_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_tts.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/contigs_rm.txt ; gene_end_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_gene_end.gtf ; start_codon_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_start_codon.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/peptidic_sequences.fasta ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_three_prime_utr.gtf ; start_codon /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/start_codon.tab ; gene /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/gene.tab ; transcript /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_gene_start.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_five_prime_utr.gtf ; exon /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/exon.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_stop_codon.gtf ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/contigs.txt ; cds /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/cds.tab ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.pep.all_lengths.tab ; gene_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_gene.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55.dna.toplevel_lengths.tab ; contig /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/contig.tab ; transcript_gtf /var/www/html/rsat/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/Lolium_perenne.MPB_Lper_Kyuss_1697.55_transcript.gtf ; organism /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/organism.tab ; log /var/www/html/rsat/public_html/data/genomes/Lolium_perenne.MPB_Lper_Kyuss_1697.55/genome/log.txt ; Parsed rows per feature type ; cds 168313 ; exon 168330 ; five_prime_utr 175 ; gene 38868 ; start_codon 38640 ; stop_codon 38545 ; transcript 38868 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop transcript ; 1 59921 20558 20561 19 4713 4689 4668 4713 ; 2 79443 27389 27389 30 6182 6138 6133 6182 ; 3 71090 24166 24171 25 5702 5671 5653 5702 ; 4 76023 26094 26097 24 5971 5940 5926 5971 ; 5 57723 19589 19590 18 4647 4623 4609 4647 ; 6 49664 16997 16997 11 3926 3909 3898 3926 ; 7 60203 20630 20634 25 4743 4711 4717 4743 ; 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JAEVFB010000049.1 228 84 84 0 15 15 15 15 ; JAEVFB010000053.1 284 98 98 0 22 22 22 22 ; JAEVFB010000054.1 25 11 11 0 1 1 0 1 ; JAEVFB010000057.1 495 198 198 0 25 25 24 25 ; JAEVFB010000058.1 486 151 151 0 46 46 46 46 ; JAEVFB010000061.1 38 13 13 0 3 3 3 3 ; JAEVFB010000063.1 2159 750 750 0 165 165 164 165 ; JAEVFB010000066.1 14 3 3 0 2 2 2 2 ; JAEVFB010000072.1 20 6 6 0 2 2 2 2 ; JAEVFB010000073.1 952 300 300 1 88 87 88 88 ; JAEVFB010000076.1 477 155 155 0 42 42 41 42 ; JAEVFB010000077.1 128 36 36 0 14 14 14 14 ; JAEVFB010000079.1 286 93 93 0 25 25 25 25 ; JAEVFB010000082.1 608 222 222 0 41 41 41 41 ; JAEVFB010000087.1 172 60 60 0 13 13 13 13 ; JAEVFB010000088.1 92 28 28 0 9 9 9 9 ; JAEVFB010000089.1 6 1 1 0 1 1 1 1 ; JAEVFB010000091.1 419 143 143 0 34 33 32 34 ; JAEVFB010000092.1 525 153 153 0 55 55 54 55 ; JAEVFB010000093.1 186 65 65 0 14 14 14 14 ; JAEVFB010000102.1 14 5 5 0 1 1 1 1 ; JAEVFB010000103.1 16 4 4 0 2 2 2 2 ; JAEVFB010000106.1 93 25 25 0 11 11 10 11 ; JAEVFB010000108.1 90 27 27 0 9 9 9 9 ; JAEVFB010000110.1 520 198 198 0 31 31 31 31 ; JAEVFB010000111.1 198 71 71 0 14 14 14 14 ; JAEVFB010000113.1 20 8 8 0 1 1 1 1 ; JAEVFB010000116.1 1267 404 404 0 115 115 114 115 ; JAEVFB010000122.1 1441 508 508 0 107 107 104 107 ; JAEVFB010000123.1 5 1 1 0 1 1 0 1 ; JAEVFB010000124.1 122 51 51 0 5 5 5 5 ; JAEVFB010000125.1 18 7 7 0 1 1 1 1 ; JAEVFB010000126.1 97 25 25 1 12 11 11 12 ; JAEVFB010000136.1 276 102 102 0 18 18 18 18 ; JAEVFB010000140.1 40 14 14 0 3 3 3 3 ; JAEVFB010000141.1 178 73 73 0 8 8 8 8 ; JAEVFB010000145.1 28 12 12 0 1 1 1 1 ; JAEVFB010000149.1 664 222 222 0 55 55 55 55 ; JAEVFB010000157.1 58 19 19 0 5 5 5 5 ; JAEVFB010000161.1 322 117 117 2 22 21 21 22 ; JAEVFB010000162.1 248 90 90 0 17 17 17 17 ; JAEVFB010000163.1 191 69 69 1 13 13 13 13 ; JAEVFB010000170.1 12 2 2 0 2 2 2 2 ; JAEVFB010000175.1 20 6 6 0 2 2 2 2 ; JAEVFB010000183.1 562 193 193 0 44 44 44 44 ; JAEVFB010000186.1 6 1 1 0 1 1 1 1 ; JAEVFB010000193.1 10 3 3 0 1 1 1 1 ; JAEVFB010000202.1 254 95 95 0 16 16 16 16 ; JAEVFB010000203.1 50 19 19 0 3 3 3 3 ; JAEVFB010000204.1 397 117 117 0 41 41 40 41 ; JAEVFB010000205.1 8 2 2 0 1 1 1 1 ; JAEVFB010000208.1 100 38 38 0 6 6 6 6 ; JAEVFB010000219.1 238 75 75 0 22 22 22 22 ; JAEVFB010000227.1 56 22 22 0 3 3 3 3 ; JAEVFB010000232.1 202 59 59 0 21 21 21 21 ; JAEVFB010000235.1 216 78 78 0 15 15 15 15 ; JAEVFB010000237.1 233 89 89 0 14 14 13 14 ; JAEVFB010000238.1 267 92 92 0 21 20 21 21 ; JAEVFB010000240.1 252 94 94 0 16 16 16 16 ; JAEVFB010000249.1 42 11 11 0 5 5 5 5 ; JAEVFB010000250.1 227 80 80 0 17 17 16 17 ; JAEVFB010000252.1 356 124 124 0 27 27 27 27 ; JAEVFB010000253.1 10 3 3 0 1 1 1 1 ; JAEVFB010000254.1 266 89 89 0 22 22 22 22 ; JAEVFB010000268.1 56 22 22 0 3 3 3 3 ; JAEVFB010000275.1 30 11 11 0 2 2 2 2 ; JAEVFB010000276.1 296 88 88 1 30 29 30 30 ; JAEVFB010000278.1 6 1 1 0 1 1 1 1 ; JAEVFB010000286.1 6 1 1 0 1 1 1 1 ; JAEVFB010000288.1 316 110 110 0 24 24 24 24 ; JAEVFB010000293.1 44 16 16 0 3 3 3 3 ; JAEVFB010000295.1 13 5 5 1 1 0 0 1 ; JAEVFB010000299.1 38 9 9 0 5 5 5 5 ; JAEVFB010000300.1 6 1 1 0 1 1 1 1 ; JAEVFB010000305.1 20 8 8 0 1 1 1 1 ; JAEVFB010000311.1 32 14 14 0 1 1 1 1 ; JAEVFB010000325.1 118 41 41 0 9 9 9 9 ; JAEVFB010000326.1 64 26 26 0 3 3 3 3 ; JAEVFB010000327.1 18 5 5 0 2 2 2 2 ; JAEVFB010000336.1 94 29 29 0 9 9 9 9 ; JAEVFB010000337.1 68 20 20 0 7 7 7 7 ; JAEVFB010000339.1 6 1 1 0 1 1 1 1 ; JAEVFB010000340.1 54 19 19 0 4 4 4 4 ; JAEVFB010000345.1 20 6 6 0 2 2 2 2 ; JAEVFB010000356.1 36 10 10 0 4 4 4 4 ; JAEVFB010000357.1 14 3 3 0 2 2 2 2 ; JAEVFB010000359.1 36 12 12 0 3 3 3 3 ; JAEVFB010000361.1 10 3 3 0 1 1 1 1 ; JAEVFB010000367.1 152 52 52 0 12 12 12 12 ; JAEVFB010000380.1 140 50 50 0 10 10 10 10 ; JAEVFB010000386.1 46 15 15 0 4 4 4 4 ; JAEVFB010000388.1 9 3 3 0 1 1 0 1 ; JAEVFB010000402.1 6 1 1 0 1 1 1 1 ; JAEVFB010000403.1 18 5 5 0 2 2 2 2 ; JAEVFB010000404.1 12 2 2 0 2 2 2 2 ; JAEVFB010000405.1 120 50 50 0 5 5 5 5 ; JAEVFB010000410.1 28 8 8 0 3 3 3 3 ; JAEVFB010000416.1 116 44 44 1 7 6 7 7 ; JAEVFB010000421.1 12 2 2 0 2 2 2 2 ; JAEVFB010000430.1 20 6 6 0 2 2 2 2 ; JAEVFB010000431.1 18 5 5 0 2 2 2 2 ; JAEVFB010000435.1 48 16 16 0 4 4 4 4 ; JAEVFB010000439.1 46 17 17 0 3 3 3 3 ; JAEVFB010000441.1 12 4 4 0 1 1 1 1 ; JAEVFB010000449.1 86 21 21 0 11 11 11 11 ; JAEVFB010000455.1 28 6 6 0 4 4 4 4 ; JAEVFB010000456.1 12 2 2 0 2 2 2 2 ; JAEVFB010000465.1 58 23 23 0 3 3 3 3 ; JAEVFB010000466.1 6 1 1 0 1 1 1 1 ; JAEVFB010000473.1 8 2 2 0 1 1 1 1 ; JAEVFB010000474.1 52 16 16 0 5 5 5 5 ; JAEVFB010000478.1 18 5 5 0 2 2 2 2 ; JAEVFB010000483.1 8 2 2 0 1 1 1 1 ; JAEVFB010000484.1 8 2 2 0 1 1 1 1 ; JAEVFB010000487.1 84 28 28 0 7 7 7 7 ; JAEVFB010000490.1 30 13 13 0 1 1 1 1 ; JAEVFB010000491.1 8 2 2 0 1 1 1 1 ; JAEVFB010000496.1 10 3 3 0 1 1 1 1 ; JAEVFB010000499.1 6 1 1 0 1 1 1 1 ; JAEVFB010000500.1 38 9 9 0 5 5 5 5 ; JAEVFB010000503.1 12 4 4 0 1 1 1 1 ; JAEVFB010000505.1 135 44 44 1 12 11 11 12 ; JAEVFB010000506.1 6 1 1 0 1 1 1 1 ; JAEVFB010000512.1 100 44 44 0 3 3 3 3 ; JAEVFB010000514.1 14 3 3 0 2 2 2 2 ; JAEVFB010000516.1 22 7 7 0 2 2 2 2 ; JAEVFB010000517.1 6 1 1 0 1 1 1 1 ; JAEVFB010000520.1 62 21 21 0 5 5 5 5 ; JAEVFB010000523.1 26 9 9 0 2 2 2 2 ; JAEVFB010000524.1 20 8 8 0 1 1 1 1 ; JAEVFB010000527.1 38 13 13 0 3 3 3 3 ; JAEVFB010000528.1 64 22 22 0 5 5 5 5 ; JAEVFB010000529.1 8 2 2 0 1 1 1 1 ; JAEVFB010000536.1 21 8 8 1 1 1 1 1 ; JAEVFB010000546.1 96 30 30 0 9 9 9 9 ; JAEVFB010000549.1 62 19 19 0 6 6 6 6 ; JAEVFB010000559.1 8 2 2 0 1 1 1 1 ; JAEVFB010000560.1 10 3 3 1 1 0 1 1 ; JAEVFB010000561.1 312 108 108 1 24 24 23 24 ; JAEVFB010000570.1 11 4 4 0 1 0 1 1 ; JAEVFB010000578.1 28 6 6 0 4 4 4 4 ; JAEVFB010000579.1 44 12 12 0 5 5 5 5 ; JAEVFB010000588.1 5 1 1 1 1 0 0 1 ; JAEVFB010000601.1 28 12 12 0 1 1 1 1 ; JAEVFB010000602.1 22 9 9 0 1 1 1 1 ; JAEVFB010000604.1 10 3 3 0 1 1 1 1 ; JAEVFB010000611.1 60 18 18 0 6 6 6 6 ; JAEVFB010000619.1 8 2 2 0 1 1 1 1 ; JAEVFB010000628.1 32 10 10 0 3 3 3 3 ; JAEVFB010000632.1 20 6 6 0 2 2 2 2 ; JAEVFB010000644.1 8 2 2 0 1 1 1 1 ; JAEVFB010000656.1 10 3 3 0 1 1 1 1 ; JAEVFB010000679.1 172 70 70 0 8 8 8 8 ; JAEVFB010000685.1 8 2 2 0 1 1 1 1 ; JAEVFB010000692.1 21 7 7 1 2 1 1 2 ; JAEVFB010000697.1 6 1 1 0 1 1 1 1 ; JAEVFB010000702.1 13 5 5 0 1 0 1 1 ; JAEVFB010000715.1 10 3 3 0 1 1 1 1 ; JAEVFB010000725.1 6 1 1 0 1 1 1 1 ; JAEVFB010000731.1 10 3 3 0 1 1 1 1 ; JAEVFB010000743.1 60 16 16 0 7 7 7 7 ; JAEVFB010000751.1 54 19 19 0 4 4 4 4 ; JAEVFB010000758.1 5 1 1 0 1 1 0 1 ; JAEVFB010000761.1 20 8 8 0 1 1 1 1 ; JAEVFB010000765.1 6 1 1 0 1 1 1 1 ; JAEVFB010000773.1 18 5 5 0 2 2 2 2 ; JAEVFB010000805.1 12 4 4 0 1 1 1 1 ; JAEVFB010000806.1 6 1 1 0 1 1 1 1 ; JAEVFB010000810.1 18 7 7 0 1 1 1 1 ; JAEVFB010000826.1 16 4 4 0 2 2 2 2 ; JAEVFB010000834.1 28 8 8 0 3 3 3 3 ; JAEVFB010000845.1 9 3 3 1 1 0 0 1 ; JAEVFB010000855.1 5 1 1 0 1 1 0 1 ; JAEVFB010000909.1 8 2 2 0 1 1 1 1 ; JAEVFB010000916.1 8 2 2 0 1 1 1 1 ; JAEVFB010000935.1 8 2 2 0 1 1 1 1 ; JAEVFB010000978.1 43 18 18 0 2 2 1 2 ; JAEVFB010000979.1 27 10 10 1 2 1 1 2 ; JAEVFB010001008.1 22 7 7 0 2 2 2 2 ; JAEVFB010001028.1 8 2 2 0 1 1 1 1 ; JAEVFB010001036.1 8 2 2 0 1 1 1 1 ; JAEVFB010001061.1 8 2 2 0 1 1 1 1 ; 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JAEVFB010001501.1 22 5 5 0 3 3 3 3 ; JAEVFB010001504.1 68 26 26 0 4 4 4 4 ; JAEVFB010001507.1 8 2 2 0 1 1 1 1 ; JAEVFB010001509.1 76 22 22 0 8 8 8 8 ; JAEVFB010001511.1 14 5 5 0 1 1 1 1 ; JAEVFB010001513.1 6 1 1 0 1 1 1 1 ; JAEVFB010001517.1 6 1 1 0 1 1 1 1 ; JAEVFB010001519.1 77 33 33 0 3 2 3 3 ; JAEVFB010001521.1 8 2 2 0 1 1 1 1 ; JAEVFB010001529.1 54 13 13 0 7 7 7 7 ; JAEVFB010001530.1 66 23 23 0 5 5 5 5 ; JAEVFB010001531.1 120 42 42 0 9 9 9 9 ; JAEVFB010001538.1 36 14 14 0 2 2 2 2 ; JAEVFB010001544.1 30 7 7 0 4 4 4 4 ; JAEVFB010001547.1 6 1 1 0 1 1 1 1 ; JAEVFB010001550.1 18 3 3 0 3 3 3 3 ; JAEVFB010001572.1 88 28 28 0 8 8 8 8 ; JAEVFB010001573.1 11 4 4 0 1 1 0 1 ; JAEVFB010001575.1 8 2 2 0 1 1 1 1 ; JAEVFB010001582.1 76 28 28 0 5 5 5 5 ; JAEVFB010001584.1 66 21 21 0 6 6 6 6 ; JAEVFB010001599.1 24 10 10 1 1 0 1 1 ; JAEVFB010001601.1 76 24 24 0 7 7 7 7 ; JAEVFB010001613.1 6 1 1 0 1 1 1 1 ; JAEVFB010001616.1 14 3 3 0 2 2 2 2 ; JAEVFB010001636.1 8 2 2 0 1 1 1 1 ; JAEVFB010001643.1 6 1 1 0 1 1 1 1 ; JAEVFB010001663.1 8 2 2 0 1 1 1 1 ; JAEVFB010001664.1 6 1 1 0 1 1 1 1 ; Host name baobab ; Job started 2022-12-13.162509 ; Job done 2022-12-14.105835 ; Seconds 143.6 ; user 143.61 ; system 19.55 ; cuser 65738.33 ; csystem 940.16