The raw contigs FASTA file, the GTF annotations and the peptide sequences were downloaded from: https://www.ncbi.nlm.nih.gov/genome/15582?genome_assembly_id=750199 The hard-masked FASTA file was produced by Perl conversion of the soft-masked sequences from NCBI with the following: perl -lne 'if(!/^>/){ s/[a-z]/N/g } print' \ Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI.dna.toplevel.fa > \ Lupinus_albus.CNRS_Lalb_10.GCA_009771035.1.NCBI.dna_rm.genome.fa The rest of files were produced by RSAT-Tools to install this genome.