; parse-gtf -v 2 -i $RSAT/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.gtf -fasta $RSAT/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.pep.all.fa -org_name Malus_domestica_golden.ASM211411v1.58 -task all -taxid 3750 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.gtf ; fasta_pep /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.pep.all.fa ; fasta /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.dna.toplevel.fa ; Output files ; transcript_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_transcript.gtf ; contig /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/contig.tab ; transcript /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/transcript.tab ; log /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/log.txt ; organism /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/organism.tab ; contig_rm /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/contig_rm.tab ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.pep.all_lengths.tab ; tss_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_tss.gtf ; start_codon_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_start_codon.gtf ; tts_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_tts.gtf ; stop_codon_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_stop_codon.gtf ; gene /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/gene.tab ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/peptidic_sequences.fasta ; exon /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/exon.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_gene_start.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_five_prime_utr.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/contigs_rm.txt ; gene_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_gene.gtf ; start_codon /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/start_codon.tab ; exon_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_exon.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/cds.tab ; stop_codon /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/stop_codon.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.dna_rm.genome_lengths.tab ; fasta_lengths /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58.dna.toplevel_lengths.tab ; gene_end_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_gene_end.gtf ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/contigs.txt ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Malus_domestica_golden.ASM211411v1.58/genome/Malus_domestica_golden.ASM211411v1.58_three_prime_utr.gtf ; Parsed rows per feature type ; cds 208515 ; exon 226050 ; five_prime_utr 32419 ; gene 42496 ; start_codon 40623 ; stop_codon 40617 ; three_prime_utr 34680 ; transcript 42496 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 30565 9467 10185 1479 2004 1929 1929 1568 2004 ; 10 45384 14098 15242 2270 2926 2802 2802 2318 2926 ; 11 40876 12773 13824 1952 2610 2491 2490 2126 2610 ; 12 35002 10932 11883 1694 2219 2119 2119 1817 2219 ; 13 37531 11709 12663 1870 2393 2275 2273 1955 2393 ; 14 33508 10491 11292 1614 2162 2058 2058 1671 2162 ; 15 61720 19514 21126 3045 3777 3613 3612 3256 3777 ; 16 39120 12436 13322 1876 2428 2330 2330 1970 2428 ; 17 37840 11742 12759 1826 2448 2334 2334 1949 2448 ; 2 42587 13303 14472 2022 2678 2570 2569 2295 2678 ; 3 38672 11974 13140 1861 2458 2347 2347 2087 2458 ; 4 32243 10018 10887 1586 2065 1956 1956 1710 2065 ; 5 47613 14728 16070 2270 3067 2944 2943 2524 3067 ; 6 31673 9855 10701 1599 2025 1927 1927 1614 2025 ; 7 41009 12721 13866 1968 2626 2524 2524 2154 2626 ; 8 33268 10454 11338 1598 2103 2002 2002 1668 2103 ; 9 39285 12300 13280 1889 2507 2402 2402 1998 2507 ; Host name baobab ; Job started 2024-01-30.160445 ; Job done 2024-01-30.224240 ; Seconds 70.25 ; user 70.25 ; system 6.27 ; cuser 23537.58 ; csystem 306.91