; parse-gtf -v 2 -i $RSAT/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.gtf -fasta $RSAT/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.pep.all.fa -org_name Musa_acuminata.Musa_acuminata_v2.60 -task all -taxid 214687 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome ; Program version 1.48 ; Input files ; fasta_pep /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.pep.all.fa ; fasta /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.dna.toplevel.fa ; gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.gtf ; fasta_rm /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.dna_rm.genome.fa ; Output files ; tss_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_tss.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_gene.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/peptidic_sequences.fasta ; transcript /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/transcript.tab ; exon /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/exon.tab ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/contigs_rm.txt ; contig_rm /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/contig_rm.tab ; tts_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_tts.gtf ; organism /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/organism.tab ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.pep.all_lengths.tab ; gene /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/gene.tab ; log /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/log.txt ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/contigs.txt ; exon_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_exon.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.dna.toplevel_lengths.tab ; contig /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/contig.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_gene_start.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/stop_codon.tab ; gene_end_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_gene_end.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_transcript.gtf ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60.dna_rm.genome_lengths.tab ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_five_prime_utr.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_three_prime_utr.gtf ; stop_codon_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_stop_codon.gtf ; start_codon_gtf /var/www/html/rsat/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/Musa_acuminata.Musa_acuminata_v2.60_start_codon.gtf ; start_codon /var/www/html/rsat/public_html/data/genomes/Musa_acuminata.Musa_acuminata_v2.60/genome/start_codon.tab ; Parsed rows per feature type ; cds 252489 ; exon 272095 ; five_prime_utr 49654 ; gene 35275 ; start_codon 45355 ; stop_codon 45345 ; three_prime_utr 42184 ; transcript 45855 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; CAJGYN010000001.1 56462 18175 19722 3647 2371 3169 3162 3024 3192 ; CAJGYN010000002.1 54889 17717 18946 3317 2517 3161 3168 2867 3196 ; CAJGYN010000003.1 77892 25271 27202 4801 3371 4362 4358 4119 4408 ; CAJGYN010000004.1 92503 29890 32234 5816 4018 5193 5202 4893 5257 ; CAJGYN010000005.1 68642 21653 23351 4423 3215 4079 4075 3720 4126 ; CAJGYN010000006.1 89378 28764 31093 5596 3896 5059 5065 4792 5113 ; CAJGYN010000007.1 64619 20681 22168 4096 2918 3760 3760 3432 3804 ; CAJGYN010000008.1 79171 25453 27294 5025 3489 4545 4537 4256 4572 ; CAJGYN010000009.1 70661 22609 24442 4450 3157 4049 4054 3791 4109 ; CAJGYN010000010.1 67772 21114 22950 4471 3155 4056 4045 3885 4096 ; CAJGYN010000011.1 57075 18490 19852 3517 2521 3227 3223 2994 3251 ; CAJGYN010000012.1 43 8 9 2 6 5 5 2 6 ; CAJGYN010000013.1 78 14 14 4 11 11 11 2 11 ; CAJGYN010000014.1 188 31 35 8 28 25 25 8 28 ; CAJGYN010000015.1 64 12 12 2 9 7 9 4 9 ; CAJGYN010000016.1 80 14 15 6 10 10 10 5 10 ; CAJGYN010000017.1 60 10 14 4 8 7 7 2 8 ; CAJGYN010000018.1 12 2 2 0 2 2 2 0 2 ; CAJGYN010000019.1 82 22 23 2 9 8 8 1 9 ; CAJGYN010000020.1 43 12 12 1 4 4 4 2 4 ; CAJGYN010000021.1 46 8 8 1 7 6 7 2 7 ; CAJGYN010000022.1 62 11 14 3 8 7 7 4 8 ; CAJGYN010000023.1 21 6 6 0 2 2 2 1 2 ; CAJGYN010000024.1 8409 2522 2677 462 543 601 599 378 627 ; Host name baobab ; Job started 2024-11-29.103516 ; Job done 2024-11-29.110711 ; Seconds 60.41 ; user 60.41 ; system 3.9 ; cuser 2877.41 ; csystem 155.87