; parse-gtf -v 2 -i $RSAT/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.gtf -fasta $RSAT/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.pep.all.fa -org_name Ostreococcus_lucimarinus.ASM9206v1.40 -task all -taxid 436017 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.gtf ; fasta /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Ostreococcus_lucimarinus.ASM9206v1.40/genome/Ostreococcus_lucimarinus.ASM9206v1.40_exon.gtf ; Parsed rows per feature type ; cds 9767 ; exon 9857 ; five_prime_utr 989 ; gene 7664 ; start_codon 6626 ; stop_codon 5665 ; three_prime_utr 1183 ; transcript 7664 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 4357 835 836 89 685 602 523 102 685 ; 10 2272 438 439 46 359 317 258 56 359 ; 11 2061 406 411 33 329 269 240 44 329 ; 12 2043 384 392 45 327 281 237 50 327 ; 13 1887 375 375 34 298 251 212 44 298 ; 14 2444 474 487 62 378 324 276 65 378 ; 15 1710 331 335 37 267 237 196 40 267 ; 16 1664 319 320 44 263 222 193 40 263 ; 17 1354 257 258 35 210 187 166 31 210 ; 18 504 92 92 14 79 70 53 25 79 ; 19 590 124 125 10 93 74 61 10 93 ; 2 3783 923 937 46 492 446 395 52 492 ; 20 2124 418 420 45 332 285 236 56 332 ; 21 1160 226 227 25 182 153 132 33 182 ; 3 3819 745 748 92 592 502 442 106 592 ; 4 3364 644 646 75 524 463 389 99 524 ; 5 3202 628 634 68 493 433 362 91 493 ; 6 2856 561 575 42 456 387 320 59 456 ; 7 2957 564 567 68 464 410 345 75 464 ; 8 2695 534 540 38 427 359 317 53 427 ; 9 2569 489 493 41 414 354 312 52 414 ; Host name baobab.eead.csic.es ; Job started 2018-09-23.104025 ; Job done 2018-09-23.110645 ; Seconds 4.98 ; user 4.98 ; system 0.23 ; cuser 1573.49 ; csystem 27.06