; parse-gtf -v 2 -i $RSAT/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.gtf -fasta $RSAT/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.pep.all.fa -org_name Saccharum_spontaneum.Sspon.HiC_chr_asm.46 -task all -taxid 62335 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.gtf ; fasta /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Saccharum_spontaneum.Sspon.HiC_chr_asm.46/genome/Saccharum_spontaneum.Sspon.HiC_chr_asm.46_exon.gtf ; Parsed rows per feature type ; cds 255496 ; exon 431583 ; five_prime_utr 18597 ; gene 83815 ; start_codon 45209 ; stop_codon 38429 ; three_prime_utr 17364 ; transcript 83815 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1A 45045 11993 20243 667 3868 2059 1712 635 3868 ; 1B 44697 11403 19855 920 3904 2037 1772 902 3904 ; 1C 38775 10870 16482 802 3173 1877 1620 778 3173 ; 1D 49133 13034 21333 1142 4163 2302 2010 986 4163 ; 2A 40295 10426 18072 490 3692 1950 1606 367 3692 ; 2B 37174 9722 16020 753 3317 1824 1542 679 3317 ; 2C 38699 9779 16894 703 3558 1915 1591 701 3558 ; 2D 34657 8623 15279 674 3158 1645 1412 708 3158 ; 3A 33117 8689 14659 651 2830 1541 1317 600 2830 ; 3B 34928 9323 15340 693 2927 1612 1407 699 2927 ; 3C 37765 9796 16757 761 3240 1719 1515 737 3240 ; 3D 25192 6118 11817 493 2191 1057 906 419 2191 ; 4A 26164 6283 12475 424 2313 1028 911 417 2313 ; 4B 25988 6414 12201 457 2255 1096 918 392 2255 ; 4C 26203 6530 11876 606 2229 1149 1017 567 2229 ; 4D 29557 7801 13531 612 2390 1242 1041 550 2390 ; 5A 29125 7701 13158 529 2463 1290 1068 453 2463 ; 5B 27134 7369 12139 473 2244 1253 1021 391 2244 ; 5C 27737 7496 12414 493 2303 1254 1028 446 2303 ; 5D 30908 8543 13725 549 2491 1407 1178 524 2491 ; 6A 25686 6903 11063 583 2183 1252 1036 483 2183 ; 6B 22887 5530 10144 467 2148 1092 932 426 2148 ; 6C 23218 6181 10141 421 2012 1121 927 403 2012 ; 6D 22418 5445 10114 395 2094 1042 833 401 2094 ; 7A 28300 7285 12574 540 2467 1324 1136 507 2467 ; 7B 27814 7373 11950 612 2394 1353 1180 558 2394 ; 7C 22412 5444 10022 394 2090 1056 939 377 2090 ; 7D 27229 7327 11714 546 2308 1302 1137 587 2308 ; 8A 26872 8170 11186 506 2010 1329 1120 541 2010 ; 8B 24363 6893 10497 420 1990 1158 985 430 1990 ; 8C 17587 4807 7585 365 1471 867 715 306 1471 ; 8D 23229 6225 10323 456 1939 1056 897 394 1939 ; Host name baobab.eead.csic.es ; Job started 2020-01-19.211730 ; Job done 2020-01-21.005023 ; Seconds 303.54 ; user 303.54 ; system 414 ; cuser 93915.87 ; csystem 4580.81