; parse-gtf  -v 2 -i $RSAT/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.gtf -fasta $RSAT/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.pep.all.fa -org_name Solanum_tuberosum.DM.v4.03.PGSC -task all -taxid 4113 -gtf_source GDR -o $RSAT/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome
; Program version       	1.48
; Input files
;	fasta_rm     	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.dna_rm.genome.fa
;	gtf          	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.gtf
;	fasta        	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.dna.toplevel.fa
;	fasta_pep    	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.pep.all.fa
; Output files
;	peptidic_sequences	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/peptidic_sequences.fasta
;	contigs_txt_rm	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/contigs_rm.txt
;	tts_gtf      	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_tts.gtf
;	gene_gtf     	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_gene.gtf
;	contig_rm    	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/contig_rm.tab
;	gene         	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/gene.tab
;	stop_codon_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_stop_codon.gtf
;	transcript   	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/transcript.tab
;	gene_start_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_gene_start.gtf
;	gene_end_gtf 	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_gene_end.gtf
;	cds          	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/cds.tab
;	three_prime_utr_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_three_prime_utr.gtf
;	log          	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/log.txt
;	exon         	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/exon.tab
;	organism     	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/organism.tab
;	contig       	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/contig.tab
;	tss_gtf      	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_tss.gtf
;	stop_codon   	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/stop_codon.tab
;	start_codon_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_start_codon.gtf
;	five_prime_utr_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_five_prime_utr.gtf
;	transcript_gtf	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_transcript.gtf
;	fasta_lengths	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.dna.toplevel_lengths.tab
;	start_codon  	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/start_codon.tab
;	contigs_txt  	/var/www/html/rsat/public_html/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/contigs.txt
;	fasta_pep_lengths	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.pep.all_lengths.tab
;	fasta_rm_lengths	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC.dna_rm.genome_lengths.tab
;	exon_gtf     	/var/www/html/rsat/data/genomes/Solanum_tuberosum.DM.v4.03.PGSC/genome/Solanum_tuberosum.DM.v4.03.PGSC_exon.gtf
; Parsed rows per feature type
;	             	1
;	cds          	202449
;	exon         	165573
;	gene         	39028
;	intron       	109913
;	mrna         	56215
; Parsed rows per contig
;	Contig       	Total		cds	exon	gene	intron	mrna
;	##gff-version 3	1	1	0	0	0	0	0
;	ST4.03ch00   	13324	0	4009	3884	1546	2086	1799
;	ST4.03ch01   	71011	0	25216	20508	4692	13757	6838
;	ST4.03ch02   	53167	0	19453	15226	3214	10276	4998
;	ST4.03ch03   	55865	0	19953	16143	3601	10883	5285
;	ST4.03ch04   	47984	0	16785	13855	3441	9027	4876
;	ST4.03ch05   	38500	0	13755	11036	2642	7235	3832
;	ST4.03ch06   	50566	0	17956	14625	3295	9804	4886
;	ST4.03ch07   	40934	0	14300	11960	2711	8029	3934
;	ST4.03ch08   	40742	0	14675	11659	2698	7830	3880
;	ST4.03ch09   	41789	0	14548	12088	3012	7889	4252
;	ST4.03ch10   	40564	0	14009	11808	2847	7837	4063
;	ST4.03ch11   	36101	0	12698	10470	2423	7013	3497
;	ST4.03ch12   	42631	0	15092	12311	2906	8247	4075
; Host name	baobab.eead.csic.es
; Job started	2018-04-24.225517
; Job done	2018-04-25.060528
; Seconds	82.27
;	user	82.27
;	system	34.25
;	cuser	23996.32
;	csystem	712.48