; parse-gtf -v 2 -i $RSAT/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.gtf -fasta $RSAT/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.pep.all.fa -org_name Vigna_radiata.Vradiata_ver6.42 -task all -taxid 3916 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.gtf ; fasta /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.pep.all.fa ; Output files ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/peptidic_sequences.fasta ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/contigs_rm.txt ; tts_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_tts.gtf ; gene_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_gene.gtf ; contig_rm /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/contig_rm.tab ; gene /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/gene.tab ; stop_codon_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_stop_codon.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/transcript.tab ; gene_start_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_gene_start.gtf ; gene_end_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_gene_end.gtf ; cds /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/cds.tab ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_three_prime_utr.gtf ; log /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/log.txt ; exon /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/exon.tab ; organism /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/organism.tab ; contig /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/contig.tab ; tss_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_tss.gtf ; stop_codon /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/stop_codon.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_start_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_five_prime_utr.gtf ; transcript_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_transcript.gtf ; fasta_lengths /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.dna.toplevel_lengths.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/start_codon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/contigs.txt ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.pep.all_lengths.tab ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Vigna_radiata.Vradiata_ver6.42/genome/Vigna_radiata.Vradiata_ver6.42_exon.gtf ; Parsed rows per feature type ; cds 139882 ; exon 147598 ; five_prime_utr 14991 ; gene 23164 ; start_codon 22622 ; stop_codon 23028 ; three_prime_utr 14139 ; transcript 23977 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 26003 8818 9265 939 1511 1490 1518 901 1561 ; 10 25450 8762 9186 954 1410 1384 1409 874 1471 ; 11 25046 8643 9078 911 1382 1365 1377 858 1432 ; 2 27812 9610 10158 989 1515 1478 1503 990 1569 ; 3 19508 6709 7093 763 1053 1048 1064 682 1096 ; 4 20885 7033 7472 797 1208 1178 1206 735 1256 ; 5 46396 16164 17062 1675 2431 2408 2453 1670 2533 ; 6 30580 10337 10941 1152 1790 1718 1745 1052 1845 ; 7 58661 20211 21228 2093 3260 3195 3252 2042 3380 ; 8 43572 14943 15803 1579 2428 2365 2406 1543 2505 ; 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scaffold_978 17 7 7 0 1 1 0 0 1 ; scaffold_979 17 7 7 0 1 1 0 0 1 ; scaffold_986 11 3 3 0 1 1 1 1 1 ; scaffold_987 9 3 3 0 1 0 1 0 1 ; scaffold_994 8 2 2 0 1 0 1 1 1 ; scaffold_996 13 4 4 0 1 1 1 1 1 ; Host name baobab.eead.csic.es ; Job started 2019-01-23.150920 ; Job done 2019-01-23.194949 ; Seconds 64.42 ; user 64.42 ; system 20.83 ; cuser 15795.67 ; csystem 675.53