; parse-gtf -v 2 -i $RSAT/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.gtf -fasta $RSAT/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.dna.toplevel.fa -fasta_rm $RSAT/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.dna_rm.genome.fa -fasta_pep $RSAT/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.pep.all.fa -org_name Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51 -task all -taxid 4577 -gtf_source ensemblgenomes -o $RSAT/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome ; Program version 1.48 ; Input files ; fasta_rm /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.dna_rm.genome.fa ; gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.gtf ; fasta /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.dna.toplevel.fa ; fasta_pep /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.pep.all.fa ; Output files ; gene_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_gene.gtf ; fasta_pep_lengths /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.pep.all_lengths.tab ; fasta_lengths /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.dna.toplevel_lengths.tab ; organism /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/organism.tab ; start_codon_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_start_codon.gtf ; exon /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/exon.tab ; contigs_txt /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/contigs.txt ; tss_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_tss.gtf ; peptidic_sequences /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/peptidic_sequences.fasta ; stop_codon_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_stop_codon.gtf ; five_prime_utr_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_five_prime_utr.gtf ; transcript /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/transcript.tab ; gene_end_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_gene_end.gtf ; gene_start_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_gene_start.gtf ; fasta_rm_lengths /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51.dna_rm.genome_lengths.tab ; exon_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_exon.gtf ; log /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/log.txt ; three_prime_utr_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_three_prime_utr.gtf ; gene /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/gene.tab ; start_codon /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/start_codon.tab ; cds /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/cds.tab ; stop_codon /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/stop_codon.tab ; contig /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/contig.tab ; transcript_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_transcript.gtf ; tts_gtf /var/www/html/rsat/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51_tts.gtf ; contigs_txt_rm /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/contigs_rm.txt ; contig_rm /var/www/html/rsat/public_html/data/genomes/Zea_mays.Zm-B73-REFERENCE-NAM-5.0.51/genome/contig_rm.tab ; Parsed rows per feature type ; cds 403064 ; exon 460812 ; five_prime_utr 93789 ; gene 44303 ; start_codon 71801 ; stop_codon 69029 ; three_prime_utr 82079 ; transcript 77341 ; Parsed rows per contig ; Contig Total cds exon five_prime_utr gene start stop three_prime_utr transcript ; 1 197845 61456 70086 14313 6555 10852 10445 12482 11656 ; 10 87689 26838 30990 6473 2986 4880 4682 5624 5216 ; 2 151127 46409 53152 10923 5291 8460 8099 9686 9107 ; 3 144125 45190 51694 10331 4580 7655 7364 9080 8231 ; 4 136118 41885 48129 9990 4591 7530 7233 8639 8121 ; 5 149864 46914 53329 10701 4960 8141 7799 9277 8743 ; 6 110064 34328 39184 7665 3819 6003 5793 6759 6513 ; 7 100044 30615 35212 7345 3418 5573 5403 6479 5999 ; 8 118628 36791 41807 8570 3924 6601 6387 7473 7075 ; 9 99402 31082 35421 7035 3335 5370 5162 6189 5808 ; scaf_100 58 8 8 8 8 8 4 6 8 ; scaf_103 139 18 18 18 18 18 15 16 18 ; scaf_106 14 1 3 1 3 1 1 1 3 ; scaf_107 94 25 25 0 11 11 11 0 11 ; scaf_110 13 4 4 1 1 1 1 0 1 ; scaf_113 26 4 4 1 4 4 4 1 4 ; scaf_114 95 24 25 0 12 11 11 0 12 ; scaf_126 70 16 20 0 9 8 8 0 9 ; scaf_136 46 6 7 6 7 6 4 3 7 ; scaf_138 12 1 3 0 3 1 1 0 3 ; scaf_139 70 16 20 0 9 8 8 0 9 ; scaf_143 19 2 3 2 3 2 2 2 3 ; scaf_146 26 3 4 3 4 3 2 3 4 ; scaf_152 6 0 2 0 2 0 0 0 2 ; scaf_153 7 1 1 1 1 1 0 1 1 ; scaf_155 20 1 5 1 5 1 1 1 5 ; scaf_158 24 8 8 0 2 2 2 0 2 ; scaf_160 24 2 5 2 5 2 1 2 5 ; scaf_161 26 7 8 1 2 2 3 1 2 ; scaf_173 17 1 4 1 4 1 1 1 4 ; scaf_174 44 10 12 0 6 5 5 0 6 ; scaf_178 73 9 11 9 11 9 7 6 11 ; scaf_179 80 17 17 5 9 9 9 5 9 ; scaf_181 80 20 20 0 10 10 10 0 10 ; scaf_183 27 6 7 0 4 3 3 0 4 ; scaf_186 13 4 4 1 1 1 1 0 1 ; scaf_187 22 5 8 2 2 1 1 1 2 ; scaf_190 28 12 12 0 1 1 1 0 1 ; scaf_191 28 8 8 2 2 2 2 2 2 ; scaf_192 3 0 1 0 1 0 0 0 1 ; scaf_194 59 14 15 0 8 7 7 0 8 ; scaf_196 89 19 26 12 6 7 5 6 8 ; scaf_198 29 3 5 3 5 3 2 3 5 ; scaf_200 75 12 13 7 10 9 8 6 10 ; scaf_203 32 3 6 3 6 3 2 3 6 ; scaf_209 29 11 12 2 1 1 1 0 1 ; scaf_210 24 2 5 2 5 2 1 2 5 ; scaf_212 9 1 2 0 2 1 1 0 2 ; scaf_214 78 21 21 0 9 9 9 0 9 ; scaf_219 71 16 19 0 8 8 9 3 8 ; scaf_22 99 27 32 11 3 7 7 5 7 ; scaf_221 68 23 27 4 4 2 2 2 4 ; scaf_222 14 2 2 1 2 2 2 1 2 ; scaf_223 56 14 14 0 7 7 7 0 7 ; scaf_224 70 16 20 0 9 8 8 0 9 ; scaf_228 62 17 17 0 7 7 7 0 7 ; scaf_229 56 14 14 0 7 7 7 0 7 ; scaf_23 117 12 21 11 21 12 8 11 21 ; scaf_231 121 42 47 9 4 6 6 1 6 ; scaf_232 8 2 2 0 1 1 1 0 1 ; scaf_235 13 3 4 2 1 1 1 0 1 ; scaf_237 60 12 18 0 7 6 7 3 7 ; scaf_241 39 10 11 0 5 4 4 0 5 ; scaf_243 40 13 13 2 3 2 1 3 3 ; scaf_246 56 14 14 0 7 7 7 0 7 ; scaf_250 30 4 4 4 4 4 3 3 4 ; scaf_253 31 4 4 4 4 4 3 4 4 ; scaf_258 72 18 18 0 9 9 9 0 9 ; scaf_259 40 10 10 0 5 5 5 0 5 ; scaf_264 16 6 6 0 1 1 1 0 1 ; scaf_273 40 10 10 0 5 5 5 0 5 ; scaf_274 41 9 9 4 4 4 4 3 4 ; scaf_275 52 11 13 0 7 6 7 1 7 ; scaf_277 22 2 4 2 4 2 2 2 4 ; scaf_278 16 2 2 2 2 2 2 2 2 ; scaf_279 22 2 4 2 4 2 2 2 4 ; scaf_281 37 5 6 4 5 5 4 3 5 ; scaf_282 8 2 2 1 1 0 0 1 1 ; scaf_288 114 43 43 5 4 6 5 2 6 ; scaf_298 60 14 16 0 8 7 7 0 8 ; scaf_30 20 8 8 0 1 1 1 0 1 ; scaf_300 35 8 9 0 4 4 5 1 4 ; scaf_301 16 3 3 1 2 2 2 1 2 ; scaf_304 17 2 3 1 3 2 2 1 3 ; scaf_307 145 38 42 13 8 10 10 13 11 ; scaf_309 23 4 4 2 3 3 2 2 3 ; scaf_311 31 4 4 4 4 4 3 4 4 ; scaf_313 7 1 1 1 1 1 0 1 1 ; scaf_315 3 0 1 0 1 0 0 0 1 ; scaf_316 52 8 20 2 3 1 2 13 3 ; scaf_317 6 1 1 1 1 1 0 0 1 ; scaf_32 8 2 2 0 1 1 1 0 1 ; scaf_321 6 0 2 0 2 0 0 0 2 ; scaf_328 6 1 1 0 1 1 1 0 1 ; scaf_33 210 28 30 28 28 26 16 25 29 ; scaf_332 37 9 10 0 5 4 4 0 5 ; scaf_335 3 0 1 0 1 0 0 0 1 ; scaf_339 40 5 5 5 5 5 5 5 5 ; scaf_34 272 36 38 35 35 35 23 32 38 ; scaf_345 14 2 2 1 2 2 2 1 2 ; scaf_348 56 14 14 0 7 7 7 0 7 ; scaf_350 24 6 6 0 3 3 3 0 3 ; scaf_355 8 1 1 1 1 1 1 1 1 ; scaf_357 60 12 21 0 8 5 5 1 8 ; scaf_359 8 2 2 0 1 1 1 0 1 ; scaf_36 29 3 5 3 5 3 2 3 5 ; scaf_360 6 1 1 0 1 1 1 0 1 ; scaf_362 40 10 10 0 5 5 5 0 5 ; scaf_37 91 28 28 4 6 7 7 4 7 ; scaf_370 52 6 24 0 8 3 3 0 8 ; scaf_372 8 2 2 0 1 1 1 0 1 ; scaf_375 16 6 6 0 1 1 1 0 1 ; scaf_380 6 1 1 0 1 1 1 0 1 ; scaf_381 22 7 7 0 2 2 2 0 2 ; scaf_382 8 1 1 1 1 1 1 1 1 ; scaf_383 8 2 2 0 1 1 1 0 1 ; scaf_386 36 8 9 3 4 2 3 3 4 ; scaf_388 86 30 35 6 1 3 3 5 3 ; scaf_398 48 12 12 0 6 6 6 0 6 ; scaf_399 23 3 3 3 3 3 2 3 3 ; scaf_409 7 1 1 1 1 1 0 1 1 ; scaf_410 8 1 1 1 1 1 1 1 1 ; scaf_412 48 12 12 0 6 6 6 0 6 ; scaf_420 98 20 25 10 9 8 7 9 10 ; scaf_435 20 6 7 2 1 1 1 1 1 ; scaf_443 23 4 7 0 4 2 2 0 4 ; scaf_444 7 1 1 1 1 1 1 0 1 ; scaf_445 26 4 7 4 2 2 2 2 3 ; scaf_446 12 2 2 0 2 2 2 0 2 ; scaf_45 166 21 24 20 23 20 15 19 24 ; scaf_461 40 10 10 0 5 5 5 0 5 ; scaf_463 32 8 8 0 4 4 4 0 4 ; scaf_465 7 1 1 1 1 1 1 0 1 ; scaf_469 16 6 6 0 1 1 1 0 1 ; scaf_475 6 1 1 0 1 1 1 0 1 ; scaf_48 132 29 33 1 19 15 15 1 19 ; scaf_487 20 2 4 3 2 2 2 3 2 ; scaf_489 22 6 6 2 2 1 1 2 2 ; scaf_49 57 5 11 5 11 5 4 5 11 ; scaf_490 37 6 9 4 4 3 3 4 4 ; scaf_494 17 3 3 2 2 2 1 2 2 ; scaf_498 71 23 28 2 5 4 3 1 5 ; scaf_507 8 1 1 1 1 1 1 1 1 ; scaf_512 13 2 2 1 2 2 2 0 2 ; scaf_514 8 1 1 1 1 1 1 1 1 ; scaf_516 19 2 3 2 3 2 2 2 3 ; scaf_518 8 1 1 1 1 1 1 1 1 ; scaf_519 40 15 15 2 2 2 1 1 2 ; scaf_521 13 2 2 1 2 2 1 1 2 ; scaf_524 10 2 2 1 1 1 1 1 1 ; scaf_527 83 25 28 7 4 5 5 4 5 ; scaf_532 63 25 26 3 2 2 1 2 2 ; scaf_538 16 4 4 0 2 2 2 0 2 ; scaf_539 69 22 23 4 3 4 4 5 4 ; scaf_54 23 1 6 1 6 1 1 1 6 ; scaf_542 43 12 13 4 2 3 3 3 3 ; scaf_545 46 11 13 5 4 3 3 3 4 ; scaf_554 10 2 2 1 1 1 1 1 1 ; scaf_556 41 7 9 4 4 4 3 6 4 ; scaf_56 73 10 10 6 10 10 10 7 10 ; scaf_562 12 2 2 0 2 2 2 0 2 ; scaf_568 28 5 7 2 4 2 2 2 4 ; scaf_576 6 1 1 1 1 1 0 0 1 ; scaf_579 6 1 1 0 1 1 1 0 1 ; scaf_582 10 2 2 1 1 1 1 1 1 ; scaf_585 32 8 8 0 4 4 4 0 4 ; scaf_587 11 2 3 2 1 1 0 1 1 ; scaf_592 6 1 1 0 1 1 1 0 1 ; scaf_604 32 8 8 0 4 4 4 0 4 ; scaf_605 21 2 5 5 2 2 1 2 2 ; scaf_61 47 6 7 4 7 6 6 4 7 ; scaf_612 20 3 4 3 2 2 2 2 2 ; scaf_621 29 4 4 4 4 4 3 2 4 ; scaf_623 21 4 6 0 3 2 2 1 3 ; scaf_625 8 1 1 1 1 1 1 1 1 ; scaf_640 20 4 4 2 2 2 2 2 2 ; scaf_644 55 13 19 5 3 3 2 7 3 ; scaf_651 79 31 31 1 4 4 3 1 4 ; scaf_656 6 1 1 0 1 1 1 0 1 ; scaf_659 12 4 4 0 1 1 1 0 1 ; scaf_66 35 3 7 3 7 3 2 3 7 ; scaf_664 6 1 1 0 1 1 1 0 1 ; scaf_666 24 6 6 0 3 3 3 0 3 ; scaf_67 14 2 2 1 2 2 2 1 2 ; scaf_670 13 2 3 1 2 1 1 1 2 ; scaf_674 36 7 9 3 3 3 3 5 3 ; scaf_675 15 2 2 2 2 2 2 1 2 ; scaf_692 16 4 4 0 2 2 2 0 2 ; scaf_695 8 1 1 1 1 1 1 1 1 ; scaf_72 52 7 7 5 7 7 7 5 7 ; scaf_77 73 18 18 1 9 9 9 0 9 ; scaf_82 104 26 26 0 13 13 13 0 13 ; scaf_87 110 14 17 12 16 13 10 11 17 ; scaf_88 91 21 27 0 11 10 10 0 12 ; scaf_94 31 3 6 2 6 3 3 2 6 ; Host name baobab ; Job started 2021-10-18.102315 ; Job done 2021-10-19.041207 ; Seconds 168.96 ; user 168.96 ; system 17.98 ; cuser 63243.97 ; csystem 716.96