; convert-matrix  -v 1 -i D1/regulonD1.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D1/regulonD1.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	D1/regulonD1.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D1/regulonD1.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	2	1	2	2	1	2	0	1	0
c	1	2	0	0	0	0	1	0	2	1	2	0	0	0	1	0	0	0	0	0	0	2	1	1
g	0	0	1	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
t	1	0	1	2	2	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	1
//
; Sites	2
>site_0
CCGTTGGGCCCAAACAAAAGACAT
>site_1
TCTTTTCGCTCAAAAATAAAACCC
a	0	1	0	0	1	1	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
c	0	0	0	1	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	0	0	1	1	1
g	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	1	0	0	0
t	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0
//
; Sites	1
>site_0
GATCAAACACCCTAGGGTTTGCCC
a	1	0	1	1	0	0	0	2	1	2	1	1	0	2	2	2	2	0	0	0	0	2	1	1
c	0	0	1	0	2	2	2	0	0	0	0	1	1	0	0	0	0	2	2	2	0	0	0	1
g	0	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0
t	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0
//
; Sites	2
>site_0
TTCGCCCAAATCCAAAACCCTAGC
>site_1
AGAACCCAGAAAGAAAACCCTAAA
a	0	0	3	0	0	0	4	6	5	6	0	0	0	0	1	0	1	1	1	0	0	1	1
c	2	4	1	2	6	2	0	0	1	0	6	4	6	1	4	5	0	4	5	1	4	3	3
g	3	0	1	1	0	0	1	0	0	0	0	0	0	1	0	1	5	0	0	5	1	0	1
t	1	2	1	3	0	4	1	0	0	0	0	2	0	4	1	0	0	1	0	0	1	2	1
//
; Sites	6
>site_0
GTTCCTGACACCCTCCGCCGCAG
>site_1
GCAGCTAAAACTCTACGTCGCTC
>site_2
CTACCCTAAACCCGCCGCCGCCA
>site_3
GCGTCTAAAACCCTCGGACCGCT
>site_4
TCCTCCAAAACTCCCCGCCGCCC
>site_5
CCATCTAAAACCCTTCACAGTTC
a	1	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	3	3	3	0	2
c	1	0	1	0	0	1	1	0	0	0	0	0	3	0	0	0	3	3	1	0	0	0	1	1
g	1	1	0	0	1	0	0	1	0	0	0	1	0	2	3	3	0	0	0	0	0	0	0	0
t	0	2	1	3	2	2	0	2	3	3	3	2	0	1	0	0	0	0	1	0	0	0	2	0
//
; Sites	3
>site_0
ATATGTAGTTTTCGGGCCAAAATC
>site_1
CTTTTCCTTTTTCTGGCCCAAACA
>site_2
GGCTTTATTTTGCGGGCCTAAATA
; Host name	baobab.eead.csic.es
; Job started	2021-02-25.192000
; Job done	2021-02-25.192000
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0