; convert-matrix  -v 1 -i D3/regulonD3.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D3/regulonD3.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	D3/regulonD3.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D3/regulonD3.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	6	6	32	1	1	1	28	31	2	3	5	3	17	7	10
c	12	7	0	0	0	31	1	1	23	2	3	24	2	11	9
g	7	9	0	31	0	0	1	0	3	26	4	2	8	5	9
t	7	10	0	0	31	0	2	0	4	1	20	3	5	9	4
//
; Sites	32
>site_0
CCAGTCAACGACGAC
>site_1
AGAGTCAACCTCTAA
>site_2
CTAGTAAACGCCACG
>site_3
CTAGTCAAGGTCGTC
>site_4
TAAGACAACGACATA
>site_5
CTAGTCGACGTAATC
>site_6
CAAATCAACGTCACT
>site_7
GGAGTCAATGTTACA
>site_8
GCAGTCAACATCATC
>site_9
GCAGTCAACATCGTG
>site_10
TCAGTCAACGCCAGC
>site_11
ATAGTCAAGGTCTCA
>site_12
GAAGTCAACGGCCGA
>site_13
GTAGTCAACGTTTCA
>site_14
TGAGTCAAGGTCCCC
>site_15
CAAGTCAACACCAAT
>site_16
CTAGTCACCGTGAAC
>site_17
CTAGTCAAAGTCGGG
>site_18
AGAGTCAATGACATA
>site_19
TTAGTCTACGTCTTA
>site_20
TGAGTCAACCTCGCG
>site_21
CGAGTCAACGACGCG
>site_22
TTAGTCAACGTTTGG
>site_23
TCAGTCAAAGTCAAA
>site_24
CGAGTCCACGTCGTG
>site_25
GTAGTCAACTTCGTG
>site_26
ACAGTCAACGAAAAG
>site_27
CAAGTCAACGGCAGC
>site_28
CAAGTCAATGTCAAT
>site_29
ACAGTCAATGGCACA
>site_30
AGAGTCAACGGGACC
>site_31
GGAGTCTACGTAACT
a	39	42	11	1	0	5	4	141	154	23	43	40
c	40	36	120	0	0	0	154	7	6	121	35	39
g	56	31	16	163	164	0	1	7	2	15	48	44
t	30	56	18	1	1	160	6	10	3	6	39	42
//
; Sites	165
>site_0
ATCGGTCGACCC
>site_1
CTCGGACAACAC
>site_2
ATCGGACAACGT
>site_3
ATCGGTCAAAAC
>site_4
GCCGGTCACCGG
>site_5
CTCGGTCGACCG
>site_6
ACCGGTCGACCG
>site_7
TTCGGTCAAAAC
>site_8
TTGGGTCAACAT
>site_9
GCTGGTCAACCA
>site_10
GTGGGTCAACGA
>site_11
CACGGTCATCAG
>site_12
ATCGGTCAAAGC
>site_13
GGCGGTCAATGG
>site_14
CATGGTCAACAA
>site_15
CTCGGTTAACCT
>site_16
TACGGTCAACTT
>site_17
GTCGGTCAAGCG
>site_18
GCCGGTCAAGAG
>site_19
GACGGTTAACGA
>site_20
TACTGTCAACAC
>site_21
AGCGGTCAAATT
>site_22
GACGGTCGACAC
>site_23
TTGGGTCAACAC
>site_24
GCCGGTCTACAG
>site_25
GTTGGTCAACTT
>site_26
TCAGGTCAACCG
>site_27
CGCGGTCAACGG
>site_28
GCCGGTCTACTA
>site_29
CCCGGTCAACTA
>site_30
CGCGGTCCACAC
>site_31
GACGGACAACCC
>site_32
ATCGGTCCACGA
>site_33
ATCGGTCAAAGG
>site_34
CACGGTCAAATT
>site_35
GGCGGTCAAGCG
>site_36
GACGGTTAACTG
>site_37
ACAGGTCAACTA
>site_38
ATGGGTCAACGT
>site_39
TCCGGTCAACGT
>site_40
CATGGTCAACAG
>site_41
AGAGGTCAACAA
>site_42
ATCGGTCAGCTA
>site_43
GGCGGTCAAATT
>site_44
CCCGGTCAATTT
>site_45
CACGGTCAAACA
>site_46
TACGGTCATCGG
>site_47
GTCGGTCAAGCG
>site_48
GACGGTAAACTA
>site_49
GCCGGTCCACGG
>site_50
CGCGGTCCACAT
>site_51
CCCGGTCAAACT
>site_52
TCCGGTCAAGCA
>site_53
TGCGGTCAAGGC
>site_54
GTCGGTCAAGTA
>site_55
ACCGGTCGACCA
>site_56
GAAGGTCAACCT
>site_57
CCCGGTCAAGTC
>site_58
GTCGGTCACCGA
>site_59
CCGGGTCAACTC
>site_60
GTTGGTCAACCC
>site_61
ATCGGTCAAGGT
>site_62
TCCGGTCAACGG
>site_63
ATCGGTCAAGAG
>site_64
CTCGGTCAATTT
>site_65
GCGGGTCAACCG
>site_66
ACCGGTCAGCGA
>site_67
TTCGGTCAAGAA
>site_68
AACGGTCCACGA
>site_69
TGGGGTCAACGT
>site_70
TGTGGTCAACTG
>site_71
TGGGGTCAACAG
>site_72
TTGGGTCAACGA
>site_73
AGAGGTCAACCG
>site_74
AACGGTCAAAGT
>site_75
TACGGTCAAAGT
>site_76
TCCGGTCTACTT
>site_77
GACGGTCAACAC
>site_78
CTCGGTGAACAC
>site_79
ATCGGTCAACTC
>site_80
GACGGTCAAAGT
>site_81
TATGGTCAACCA
>site_82
GGTGGTCAACTG
>site_83
TACGTTCAACGT
>site_84
GTCGGTCCACGG
>site_85
AGTGGTCAACAC
>site_86
ACGGGTCAACAA
>site_87
GTCGGTCAACCA
>site_88
GGCGGTCAAGAA
>site_89
CACGGTCTACCG
>site_90
GTTGGTCAACAT
>site_91
ATCGGTCTACAG
>site_92
CGCGGTCGACAT
>site_93
TACGGTCTACGT
>site_94
GCCGGTTAACGG
>site_95
ATGGGTCAACCA
>site_96
CCCGGTCAAAAG
>site_97
ACCGGTCAACGC
>site_98
ACCGGTCAAATC
>site_99
CACGGTCACCAG
>site_100
CACGGTCAAGGG
>site_101
CGAGGTCAACCG
>site_102
GACGGTCACCGG
>site_103
CTCGGTCAACAA
>site_104
AACGGTCAACCC
>site_105
AACGGTCAACAC
>site_106
CGCGGTCAAATT
>site_107
GGAGGTCAACTT
>site_108
GTCGGTCAACCT
>site_109
GGGGGTCAACTA
>site_110
ATCGGTAAACGC
>site_111
GACGGTTAACTG
>site_112
GACGGTCTACCG
>site_113
GACGGTCAACAC
>site_114
TTGGGTCAACCA
>site_115
GTCGGTCAATTT
>site_116
CACGGACAACAC
>site_117
AGCGGTCAAAGA
>site_118
CACGGTCAAACA
>site_119
CTCGGTTAACTA
>site_120
GCAGGTCAACGT
>site_121
ACGGGTCAACAA
>site_122
CGTGGTCAACGT
>site_123
GTCGGTCTACTC
>site_124
ACTGGTCAACGC
>site_125
CTCGGTCTACTC
>site_126
CGCGGTCAACTC
>site_127
TCCGGTCACCGG
>site_128
GGCGGTCAAACA
>site_129
GTCGGTCAACTC
>site_130
ATAGGTCAACAA
>site_131
AACGGTAAACCT
>site_132
TCCGGTCAAAGT
>site_133
TACGGACAACAC
>site_134
GACGGTCATCCA
>site_135
CGCGGTCAAGCT
>site_136
TTTGGTCAACCG
>site_137
CCAGGTCAACAT
>site_138
TACAGTCAACGA
>site_139
AATGGTCAACGT
>site_140
GATGGTCAACGT
>site_141
CTCGGTCAACTG
>site_142
CTCGGTCAACTC
>site_143
GTGGGTCAACGT
>site_144
AGGGGTCAACAG
>site_145
GCCGGTCAAATA
>site_146
TTCGGTCAAATC
>site_147
ACCGGTCAAAGT
>site_148
CGCGGTAAACGA
>site_149
GTCGGTCAAATA
>site_150
GTCGGTCACCCT
>site_151
TTTGGTCAACAC
>site_152
CCCGGTCAACTC
>site_153
GTCGGTCGACCC
>site_154
GCCGGTCAATAG
>site_155
GGCGGTCAAGTC
>site_156
GGCGGTCAACTT
>site_157
CTCGGTCTACAG
>site_158
GTTGGTCAACAC
>site_159
AACGGTCAACAG
>site_160
GTCGGTCAACGG
>site_161
TGCGGTCCACGT
>site_162
CTAGGTCAACGA
>site_163
GATGGTCAACAG
>site_164
AACGGTCAATGC
a	24	43	0	140	140	0	0	0	27	37	24
c	28	37	140	0	0	0	0	140	15	36	55
g	41	20	0	0	0	140	0	0	25	20	34
t	47	40	0	0	0	0	140	0	73	47	27
//
; Sites	140
>site_0
ACCAAGTCCCT
>site_1
CACAAGTCGAT
>site_2
GGCAAGTCACG
>site_3
GTCAAGTCTTC
>site_4
CACAAGTCTAT
>site_5
CGCAAGTCTTC
>site_6
GACAAGTCGTA
>site_7
TACAAGTCGAT
>site_8
ACCAAGTCTGT
>site_9
TGCAAGTCTCG
>site_10
TACAAGTCATG
>site_11
TCCAAGTCTTG
>site_12
TCCAAGTCTAC
>site_13
ACCAAGTCCAG
>site_14
CGCAAGTCTTG
>site_15
CTCAAGTCACA
>site_16
GTCAAGTCTGG
>site_17
TGCAAGTCATA
>site_18
GTCAAGTCGTG
>site_19
GTCAAGTCTCA
>site_20
GCCAAGTCTGG
>site_21
TTCAAGTCTTT
>site_22
TTCAAGTCTTT
>site_23
TCCAAGTCACG
>site_24
ACCAAGTCTGT
>site_25
GTCAAGTCGTC
>site_26
CTCAAGTCTCG
>site_27
GTCAAGTCTTC
>site_28
GACAAGTCACA
>site_29
TACAAGTCAAC
>site_30
ATCAAGTCACC
>site_31
TCCAAGTCTTC
>site_32
TACAAGTCAAG
>site_33
CACAAGTCTCC
>site_34
ACCAAGTCTTA
>site_35
GCCAAGTCTTC
>site_36
AACAAGTCTAT
>site_37
CGCAAGTCTCT
>site_38
GTCAAGTCTTC
>site_39
GTCAAGTCGTC
>site_40
AACAAGTCTGT
>site_41
TTCAAGTCTTA
>site_42
TCCAAGTCTCC
>site_43
TACAAGTCAGT
>site_44
CGCAAGTCTAA
>site_45
AACAAGTCCAC
>site_46
TGCAAGTCATA
>site_47
TGCAAGTCTAG
>site_48
CCCAAGTCTCC
>site_49
TACAAGTCGAT
>site_50
ATCAAGTCTCG
>site_51
ATCAAGTCTTT
>site_52
CGCAAGTCTCC
>site_53
CACAAGTCGTT
>site_54
GTCAAGTCCAC
>site_55
AACAAGTCCAC
>site_56
ACCAAGTCATC
>site_57
ACCAAGTCTTC
>site_58
ACCAAGTCTGA
>site_59
GACAAGTCTTC
>site_60
ACCAAGTCAGG
>site_61
CCCAAGTCTCC
>site_62
GACAAGTCTTC
>site_63
GTCAAGTCTCC
>site_64
CCCAAGTCGGT
>site_65
CTCAAGTCCAC
>site_66
TGCAAGTCTGC
>site_67
TACAAGTCCCT
>site_68
GTCAAGTCAGT
>site_69
GGCAAGTCGAC
>site_70
GTCAAGTCTAG
>site_71
AGCAAGTCTCG
>site_72
CACAAGTCTGA
>site_73
GGCAAGTCTAC
>site_74
TACAAGTCACA
>site_75
TCCAAGTCTTC
>site_76
TTCAAGTCCTA
>site_77
TACAAGTCTAG
>site_78
GACAAGTCGTC
>site_79
TCCAAGTCTGT
>site_80
GACAAGTCGAC
>site_81
GGCAAGTCACG
>site_82
TCCAAGTCTTC
>site_83
TACAAGTCATA
>site_84
GACAAGTCCTC
>site_85
GTCAAGTCTCC
>site_86
ACCAAGTCGTC
>site_87
ACCAAGTCGGT
>site_88
TACAAGTCACA
>site_89
GTCAAGTCTTT
>site_90
CTCAAGTCTCG
>site_91
CGCAAGTCTTC
>site_92
TCCAAGTCTAT
>site_93
GTCAAGTCGTC
>site_94
GCCAAGTCTTG
>site_95
GACAAGTCCGC
>site_96
CTCAAGTCTTC
>site_97
CTCAAGTCTAA
>site_98
CACAAGTCTGC
>site_99
ACCAAGTCGTC
>site_100
CTCAAGTCTCG
>site_101
TACAAGTCGAG
>site_102
TACAAGTCTCG
>site_103
TCCAAGTCTCG
>site_104
TACAAGTCAAC
>site_105
TCCAAGTCTTG
>site_106
CGCAAGTCGAC
>site_107
CACAAGTCCAC
>site_108
TTCAAGTCTGG
>site_109
GCCAAGTCTCG
>site_110
TTCAAGTCTCG
>site_111
ATCAAGTCCAC
>site_112
TACAAGTCAAT
>site_113
TACAAGTCCCG
>site_114
TACAAGTCGAA
>site_115
GCCAAGTCTTT
>site_116
GTCAAGTCGTC
>site_117
GTCAAGTCGTC
>site_118
TGCAAGTCTAA
>site_119
ACCAAGTCATA
>site_120
GCCAAGTCTCT
>site_121
TCCAAGTCTAA
>site_122
CACAAGTCACG
>site_123
GACAAGTCCAC
>site_124
CCCAAGTCTCC
>site_125
GTCAAGTCTAA
>site_126
TCCAAGTCTTG
>site_127
TTCAAGTCTAG
>site_128
ACCAAGTCGGC
>site_129
TACAAGTCATC
>site_130
GTCAAGTCGTC
>site_131
TACAAGTCACG
>site_132
CACAAGTCACA
>site_133
TACAAGTCCAA
>site_134
CTCAAGTCTCC
>site_135
GTCAAGTCAGT
>site_136
GTCAAGTCAGT
>site_137
AGCAAGTCTAC
>site_138
TGCAAGTCGTA
>site_139
GACAAGTCGAC
a	3	6	2	0	0	15	1	0	9	1	0	1	4	6
c	1	1	1	0	13	0	2	0	3	0	0	14	4	5
g	3	1	11	0	0	0	0	1	1	14	0	0	2	2
t	8	7	1	15	2	0	12	14	2	0	15	0	5	2
//
; Sites	15
>site_0
TTGTCATTTGTCCC
>site_1
CTGTCATTTGTCCC
>site_2
GTATCATTAGTCTA
>site_3
TACTCATTCGTCCT
>site_4
GAGTCATGAGTCGC
>site_5
TAGTCATTAATCAC
>site_6
AAGTCATTAGTATA
>site_7
TCGTCATTGGTCGT
>site_8
ATGTTATTAGTCTA
>site_9
GTGTCACTAGTCAC
>site_10
TATTCATTCGTCTA
>site_11
TTGTCAATAGTCAG
>site_12
TAGTCACTAGTCAG
>site_13
ATGTTATTCGTCTA
>site_14
TGATCATTAGTCCA
a	5	8	1	0	30	0	28	1	0	26	1	1	4	7
c	4	9	23	2	1	0	0	29	0	2	27	1	11	8
g	15	9	6	29	0	31	1	0	31	2	2	3	8	10
t	7	5	1	0	0	0	2	1	0	1	1	26	8	6
//
; Sites	31
>site_0
GACGAGACGAGTTT
>site_1
GATGAGACGACTTG
>site_2
GACGCGACGACTAA
>site_3
GGAGAGACGACTGG
>site_4
TGCCAGACGACTGT
>site_5
GACGAGACGCCTGG
>site_6
TGCGAGATGACTGC
>site_7
ATCGAGACGACACA
>site_8
GCGGAGACGACTCC
>site_9
GCCGAGACGAATTG
>site_10
CCCGAGTCGACTCG
>site_11
GGCGAGTCGACTCG
>site_12
GGGGAGACGACTGG
>site_13
CCCCAGACGACTCC
>site_14
AACGAGACGACGAA
>site_15
GGCGAGGCGACTTC
>site_16
GACGAGACGAGTCC
>site_17
GCCGAGACGACTGT
>site_18
TCCGAGAAGACTCT
>site_19
TGCGAGACGGCTTC
>site_20
TCCGAGACGTCTCA
>site_21
ATCGAGACGCCTAG
>site_22
TTGGAGACGACTAT
>site_23
CCGGAGACGACTTG
>site_24
CGGGAGACGACTTG
>site_25
TACGAGACGACCTC
>site_26
ACGGAGACGACTGA
>site_27
GTCGAGACGACGCC
>site_28
GGCGAGACGATTGA
>site_29
GACGAGACGACGCA
>site_30
ATCGAGACGGCTCT
; Host name	baobab.eead.csic.es
; Job started	2021-02-25.191849
; Job done	2021-02-25.191849
; Seconds	0.17
;	user	0.17
;	system	0.03
;	cuser	0
;	csystem	0