; convert-matrix -v 1 -i D3/regulonD3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D3/regulonD3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt ; Input files ; input D3/regulonD3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf ; Input format transfac ; Output files ; output D3/regulonD3.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt ; Output format tab ; pseudo-weight 1 a 0 0 0 0 2 2 0 0 0 1 2 1 0 1 0 0 0 0 0 1 2 c 0 0 2 2 0 0 0 0 2 1 0 0 1 0 1 0 0 0 0 1 0 g 1 1 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 2 2 0 0 t 1 1 0 0 0 0 0 2 0 0 0 1 0 1 1 2 2 0 0 0 0 // ; Sites 2 >site_0 TTCCAAGTCAATCATTTGGAA >site_1 GGCCAAGTCCAAGTCTTGGCA a 0 2 1 0 0 0 1 0 3 3 1 0 2 0 0 0 0 0 1 1 c 2 1 3 1 0 0 0 4 0 0 3 0 1 4 1 1 0 0 1 3 g 2 1 0 3 3 3 0 0 1 1 0 4 0 0 0 0 4 4 2 0 t 0 0 0 0 1 1 3 0 0 0 0 0 1 0 3 3 0 0 0 0 // ; Sites 4 >site_0 CACGGGACGAAGACTTGGAC >site_1 CCCGTGTCAACGACCCGGCC >site_2 GGCCGGTCAGCGTCTTGGGC >site_3 GAAGGTTCAACGCCTTGGGA a 6 4 5 3 3 16 11 16 2 0 16 2 0 0 1 0 1 3 c 0 2 0 3 4 0 2 0 12 1 0 14 0 1 0 0 4 5 g 4 8 5 6 2 0 3 0 2 13 0 0 0 0 12 13 5 5 t 6 2 6 4 7 0 0 0 0 2 0 0 16 15 3 3 6 3 // ; Sites 16 >site_0 TGTATAAAGGACTTTGGG >site_1 AGATGAGACGACTTGGAG >site_2 TTGTGAAAGGACTTGGTC >site_3 ACAAAAAACGACTTGTGC >site_4 TGAGTAAACTACTTGTCA >site_5 TGAGCAAACTACTTGGGA >site_6 ACTCTAAACGAATTGTGC >site_7 GAGTCAAACGACTTTGTC >site_8 GAGCCAAACGACTCGGTC >site_9 AAGGAAGACGACTTGGTT >site_10 GTAGTAAACGAATTGGGA >site_11 TGTTTACAAGACTTGGCT >site_12 GGGGAAGACGACTTGGTG >site_13 TGTGTACACGACTTTGTG >site_14 AGTATAAAACACTTGGCT >site_15 AATCCAAACGACTTAGCG a 134 172 372 0 463 456 461 461 361 53 162 160 c 91 71 21 0 0 4 3 1 19 50 110 89 g 120 104 26 468 0 0 3 1 35 53 105 87 t 123 121 49 0 5 8 1 5 53 312 91 132 // ; Sites 468 >site_0 CAAGAAAATTAA >site_1 CTAGAAAACTTG >site_2 AAAGAAAAAGTA >site_3 TAGGAAAAATCA >site_4 AAAGAAAAATAA >site_5 TTAGAAACATAC >site_6 GAAGAAAAAACG >site_7 GTAGAAAATTCG >site_8 AATGAAAAATCA >site_9 TTTGAAAAATAT >site_10 CTAGAAAATTAC >site_11 AGAGAAAAAGGA >site_12 GAAGAAAAATCA >site_13 GTGGAAAAATAG >site_14 ATAGATAAATGG >site_15 AGAGAAAAAGAA >site_16 TAAGAAAAACAA >site_17 TGAGAAAATTAC >site_18 AGAGAAAAATGT >site_19 GGAGAAAATTCT >site_20 ATAGAAATATCT >site_21 TGAGAAAAGTGA >site_22 ATAGAAAAATCT >site_23 CGAGAAAACTGA >site_24 ACCGAAAAATGC >site_25 AAAGAAAAGTAA >site_26 CCAGAAAAATCC >site_27 TAAGAAATATAC >site_28 TCAGAAAATTCA >site_29 TGAGAAAATTAA >site_30 AATGAAAAATAA >site_31 ACAGAAAAACTA >site_32 CTAGAAAAAGAA >site_33 GTAGAAAAGTAG >site_34 CTAGAAAAAATA >site_35 ACAGAAAAAGAT >site_36 TTAGAAAAAATA >site_37 TTAGAAAAACAA >site_38 CTAGAAAAATCT >site_39 TAAGAAAAACAT >site_40 TTAGAAAATTTT >site_41 TTAGATAAATTA >site_42 GTAGATAAATAA >site_43 TTAGAAAAATCA >site_44 AAAGAAAAACGT >site_45 TTTGAAAAATAA >site_46 ACAGAAAAAGAG >site_47 TTAGAAAAAAGG >site_48 AACGAAAAATAG >site_49 ATAGAAAAATGG >site_50 ACAGAAAAATAC >site_51 AGAGAAAATTAC >site_52 GCAGAAAAATCC >site_53 CAAGAAAAAAGT >site_54 GAAGAAAAACCA >site_55 AAAGAAAAATCA >site_56 AAAGAAAAACCC >site_57 GGAGAAAAATCA >site_58 ACAGAAAAAAGT >site_59 TCAGAAAAAGAC >site_60 ATAGAAAAATGA >site_61 AATGAAAAATGC >site_62 GAAGAAAAAGGG >site_63 CAAGAAAAATGA >site_64 TCAGAAAAGTCA >site_65 CGAGAAAAGTCC >site_66 TGAGAAAAAAGT >site_67 GTTGAAAAATCT >site_68 GGAGAAAAACAT >site_69 TTAGAAAAAAGT >site_70 GTAGAAGAATAC >site_71 AAAGAAAAACGC >site_72 AAGGAAAAATGC >site_73 CACGAAAAATCT >site_74 GGAGAAAAAGAG >site_75 AAAGAAAAATCT >site_76 ACAGAAAAATTT >site_77 CATGAAAAATAA >site_78 ACAGAAAATTCG >site_79 GTAGAAGAATAC >site_80 GAAGAAAAATCT >site_81 ACAGAAAATTGT >site_82 CAAGAAAATTTC >site_83 AAAGAAAAGTAC >site_84 ATGGAAAAATTG >site_85 GGAGAAAACTTG >site_86 AAAGAAAAACAG >site_87 TTAGAAAAACCT >site_88 CGAGAAAAAGAT >site_89 TATGAAAAATAT >site_90 GACGAAAAATTA >site_91 CTTGAAAAATAA >site_92 GAAGAAAAAGGA >site_93 AAAGAAAACTAT >site_94 CACGAAAAATAA >site_95 CGTGAAAAATAG >site_96 TGAGAAAAAAGA >site_97 GCAGAAAATTTC >site_98 CAAGAAAAGTGT >site_99 AAAGAAAAACGA >site_100 GAAGAAAAAGAG >site_101 CCAGAAAAAAGA >site_102 GGAGAAAATTAT >site_103 AGAGAAAAAGAA >site_104 TTTGAAAAATAA >site_105 GTGGAAAAATGG >site_106 TAAGAAAAAACT >site_107 TTCGAAAAATAT >site_108 AGAGAAAAAGGA >site_109 ACAGAAAAATGT >site_110 GAAGAAAAATAT >site_111 CTCGAAAAATTT >site_112 CGAGAAAAATAT >site_113 TTAGAAAAATGC >site_114 CATGAAAAATGG >site_115 TGAGAAAAAGAT >site_116 CAAGAAAAACAC >site_117 CAAGAAAAATAT >site_118 CTCGAAAAATCA >site_119 GAAGAAAAGTAA >site_120 GGAGAAAAAAGG >site_121 GAAGAAAATTAC >site_122 TGAGAAAACTTA >site_123 ACTGAAAAATAG >site_124 ATAGAAAAATAT >site_125 ACAGAAAATTTG >site_126 TAAGAAAAGTAG >site_127 GCCGAAAAATTC >site_128 TGAGAAAAACAT >site_129 TATGAAAAATGT >site_130 GCAGAAAATTCT >site_131 AGAGAAAAATCG >site_132 ACAGAAAAAGGG >site_133 ACAGAAATATAA >site_134 GATGAAAAATTT >site_135 AAAGAAAACTCC >site_136 ATAGAAAAAGGA >site_137 CGAGAAAAAGTT >site_138 AAAGAAAAGTCT >site_139 GAAGAAAAAGGA >site_140 GAAGAAAAACGG >site_141 AAAGAAAACTCC >site_142 GTTGAAAAATCA >site_143 CAAGAAAACTTA >site_144 CAAGAAAAGTTC >site_145 CTTGAAAAATGT >site_146 ATAGAAAAATCA >site_147 AGAGAAAAAGAA >site_148 CCAGATAAATAC >site_149 AAAGAAAAATCA >site_150 AAAGAAAAAACG >site_151 CAAGAAAAATGT >site_152 CCAGAAAAATTA >site_153 ATGGAAAAATAT >site_154 AGAGAAAAATGA >site_155 AAAGAAAAACCT >site_156 CAAGAAAAATCC >site_157 GTTGAAAAATTA >site_158 GAAGAAAAATCA >site_159 ATAGAAAATTGG >site_160 GAAGAAAAACCG >site_161 CTAGAAAAATCT >site_162 AAAGAAAAGTCG >site_163 AAAGAAAAACTA >site_164 ATAGAAAAAATT >site_165 TAAGAAAAGTCT >site_166 GAAGAAAACTCA >site_167 CTGGAAAAATAG >site_168 AAAGAAAAAGGA >site_169 TTAGAAAAATCG >site_170 GGTGAAAAATTG >site_171 TAAGAAAAATGA >site_172 GAAGAAAAAAGG >site_173 ACAGAAAAAGTC >site_174 TTAGAAAAATTA >site_175 TAAGAAAAATAA >site_176 GAAGAAAAACTT >site_177 AGAGAAAAATAG >site_178 GAAGAAAAGTCC >site_179 AAGGAAAAATCT >site_180 TGAGTAAAATAC >site_181 CAAGAAAAAGCA >site_182 AAAGAAAAAGTC >site_183 AACGAAAAATCA >site_184 TAAGAAAAATGA >site_185 TCTGAAAAATGC >site_186 TAAGAAAAAGTC >site_187 GCAGAAAAAATC >site_188 TGAGAAAAACAC >site_189 GAAGAAAAAGAG >site_190 ACAGAAAAACAG >site_191 AAAGAAAAACAT >site_192 ACGGAAAAATTG >site_193 CGAGAAAAAATT >site_194 ATAGAAAAACTT >site_195 GGAGAAAACTGA >site_196 AAAGAAAAAGAT >site_197 ACAGAAAAAATC >site_198 TGAGAAAAGTAG >site_199 CTAGAAAAAGAA >site_200 CACGAAAAATTA >site_201 CGAGAAAAAATT >site_202 GAAGAAAAATAC >site_203 TCAGAAAAAGCT >site_204 AGAGAAAAAGGA >site_205 GAAGAAAAACAG >site_206 CCTGAAAAATGT >site_207 TGAGAAAAAGTT >site_208 GAAGAAAAAGAG >site_209 AAAGAAAACTGT >site_210 CGAGAAAAAGGA >site_211 AAAGAAAAATCA >site_212 GTAGAAAAATGG >site_213 CGTGAAAAATGA >site_214 AAAGAAAATTAC >site_215 AAAGAAAAACAC >site_216 GAAGAAAAAAGA >site_217 ATAGAACAATTA >site_218 AAAGAAAAGTAA >site_219 CGGGAAAAATAT >site_220 GGAGAAAAACAT >site_221 TAAGAAAAACAC >site_222 TTTGAAAAATTC >site_223 AAAGAAAAATAG >site_224 TTAGAAAATTGA >site_225 TCTGAAAAATCC >site_226 CAAGAAAAATCA >site_227 AAAGAAAAACAA >site_228 TCTGAAAAATCA >site_229 TGAGAAAAAATT >site_230 CTAGAAAAGTTT >site_231 ATAGAAGAATAT >site_232 AGAGAAAAAACG >site_233 GAAGAAAAAAGA >site_234 AGAGAAAAGTGG >site_235 GCCGAAAAATAA >site_236 CCAGAAAATTGG >site_237 TAGGAAAAATTC >site_238 CATGAAAAATTC >site_239 GAAGAAAAAACA >site_240 ATAGAAAATTTG >site_241 GGAGAAAAACTG >site_242 AAAGAAAAATCT >site_243 CGAGAAAAAATA >site_244 TTAGATAAATAA >site_245 CTAGATAAATAT >site_246 GTAGAAAAAGAA >site_247 CCAGAAAAAACA >site_248 TTGGAAAAATAT >site_249 TTAGAAAATTGT >site_250 TCTGAAAAATTG >site_251 TTTGAAAAATCA >site_252 GAAGAAAAAATA >site_253 AGAGAAAAATGT >site_254 GTCGAAAAATAA >site_255 TAAGAAAAATTT >site_256 TCAGAAAAAGGA >site_257 GAAGAAAAACCG >site_258 CTAGAATAATCA >site_259 CAGGAAAAATCC >site_260 CGAGAAAAATCT >site_261 AAAGAAAAATAT >site_262 CGAGAAAAACAT >site_263 AAAGAAAAAACC >site_264 TAAGAAAATTAA >site_265 GGAGAAAAAACA >site_266 GAAGAAAAACAG >site_267 TTAGAAAAGTGA >site_268 GGAGAAAAGTAT >site_269 ACAGAAAAAGTA >site_270 TTAGAAAAAGTT >site_271 GGGGAAAAATAT >site_272 TTAGAAAAATCA >site_273 TAAGAAAAAATC >site_274 ATAGAAAAACAA >site_275 TCCGAAAAATGT >site_276 CCTGAAAAATGG >site_277 TGAGAAAATTCC >site_278 TAAGAAATATTA >site_279 GCGGAAAAATTC >site_280 GGAGAAAATTGG >site_281 TGTGAAAAATGA >site_282 GTAGAAAATTAC >site_283 CGAGAAAAATAT >site_284 GGAGAAAAACAA >site_285 AAAGAAAAATTG >site_286 ATAGAAAAATAT >site_287 TAAGAAAAACGA >site_288 CAAGAAAATTGC >site_289 CAAGAAAAAACT >site_290 TTCGAAAAATAG >site_291 CGAGAAAAATTA >site_292 CGAGAAAAATGG >site_293 CAAGAAAAAACG >site_294 TGAGAAAAGTCC >site_295 TGAGAAAAGTAT >site_296 GCGGAAAAATCT >site_297 GAAGAAAATTTC >site_298 GAAGAAAAATCA >site_299 AGAGAAAATTTT >site_300 CGAGAAAATTTT >site_301 AATGAAAAATTG >site_302 TTTGAAAAATCA >site_303 CTAGACAAATAG >site_304 GAGGAAAAATGA >site_305 TGAGAAAAAGAC >site_306 GTAGAAAAATCC >site_307 GCAGAAAACTGC >site_308 TTAGAAAAATAG >site_309 GAAGAAAATTCG >site_310 TTAGACAAATAT >site_311 CAAGAAAAACAA >site_312 AGAGAAAATTAA >site_313 CCAGAAAAATAT >site_314 GAAGAAAAACAG >site_315 ACAGAAAAATTC >site_316 TTAGAAAATTCT >site_317 GCAGAAAATTTA >site_318 TTTGAAAAATAA >site_319 GAAGAAAAAACC >site_320 TAAGAAAAGTAA >site_321 CTAGAAAAACTG >site_322 CCAGAAAAGTCT >site_323 TAAGAAAAATAA >site_324 TTAGAAAATTCA >site_325 TCAGAAAAATGT >site_326 TTTGAAAAATGA >site_327 GTAGAAAAAATG >site_328 GAAGAAAAACGC >site_329 AAAGAAAAATAA >site_330 GGAGAAAAACAA >site_331 GGAGAAAAAGGT >site_332 TGGGAAAAATTT >site_333 GGTGAAAAATGG >site_334 GCAGAAAATTTA >site_335 TTAGAAAAAGAC >site_336 ATTGAAAAATTA >site_337 TAAGAAAACTTG >site_338 AAAGAAAAATAC >site_339 GGAGAAAAATTA >site_340 GTAGAAAAGTCA >site_341 CAAGAAAATTCT >site_342 AAAGAAAAGTAC >site_343 GTAGAAAAAAGA >site_344 GTAGAAAAACAA >site_345 GAAGAAAAAAGA >site_346 GGAGAAAATTCC >site_347 AACGAAAAATTT >site_348 TAAGAAAAATCT >site_349 TAAGAAAAAACG >site_350 TGAGAAAAACCG >site_351 GCTGAAAAATCC >site_352 GGAGACAAATAC >site_353 TAAGATAAATAA >site_354 GAAGAAAAAATA >site_355 AGAGAAAAGTCT >site_356 CAAGAAAAAATA >site_357 TTGGAAAAATCC >site_358 AAAGAAAAATCT >site_359 ACAGAACAATAT >site_360 GTAGAAAATTGA >site_361 AAAGAAAAAATA >site_362 GTAGAAAATTCT >site_363 GTAGAAAAATAT >site_364 CGAGAAAAAGAA >site_365 GTAGTAAAATCC >site_366 ACAGAAAACTAA >site_367 CTAGAAAAGTGT >site_368 GAAGAAAAAAGA >site_369 CTTGAAAAATGT >site_370 TTTGAAAAATAG >site_371 CAAGAAAAAGGA >site_372 GCCGAAAAATAC >site_373 CGGGAAAAATCA >site_374 TAAGAAAATTTC >site_375 ATAGAAAAATAT >site_376 GTAGAAAATTAG >site_377 TCAGAAAAAGAT >site_378 CGAGAAAAATAC >site_379 TGTGAAAAATGC >site_380 TTTGAAAAATTC >site_381 AGGGAAAAATGT >site_382 GTAGAAATATAT >site_383 TACGAAAAATGT >site_384 TAAGAAAAAATA >site_385 GTGGAAAAATCC >site_386 ATAGAAAGATAT >site_387 AAAGAAAAGTCC >site_388 CCAGAAAAACCA >site_389 TGAGAAAAACCG >site_390 ATAGAACAATAC >site_391 GACGAAAAATAA >site_392 GTAGAAAAATGT >site_393 GGAGAAAAGTTG >site_394 TCAGAAAAATAA >site_395 GGTGAAAAATGA >site_396 AGAGAAAATTTT >site_397 AAAGAAAAAACA >site_398 GGAGAAAAATGC >site_399 TGAGAAAATTAC >site_400 TAAGAAAAATAG >site_401 GTAGAAAAACCT >site_402 GTAGAAAAATCC >site_403 AACGAAAAATAA >site_404 GGAGAAAAAGAT >site_405 CCAGAAAAAGGC >site_406 TTTGAAAAATCA >site_407 AGAGAAAACTGG >site_408 ATAGAAAAATAT >site_409 TATGAAAAATAA >site_410 CAAGAAAATTAA >site_411 TTTGAAAAATAG >site_412 AAAGAAAAATGA >site_413 TGAGAAAAGTCT >site_414 AGAGAAAAACGG >site_415 TTTGAAAAATAG >site_416 CGAGAAAAAAGA >site_417 GAAGAAAATTTC >site_418 GTAGAAAAAGAA >site_419 GAAGAAAAAATG >site_420 ACAGAAAATTTC >site_421 TAAGAAAAACTT >site_422 TAGGAAAAATCG >site_423 CCAGAAAATTCT >site_424 TAAGAAAATTTC >site_425 TAAGAAAAAACC >site_426 GAAGAAAAAGGA >site_427 GAGGAAAAATAT >site_428 GTAGTAAAATAT >site_429 GCAGAAAAATGG >site_430 CAAGAAAAGTCA >site_431 CCAGAAAAAGAC >site_432 AGAGAAAAAAGG >site_433 TCAGAAAAATAA >site_434 AGAGAAAAAAGA >site_435 GAAGAAAATTTG >site_436 TGAGAAAAAGAG >site_437 CCAGAAAAAGAT >site_438 ATAGAAAACTCA >site_439 TAGGAAAAATAA >site_440 CGTGAAAAATTG >site_441 TCAGAAAAGTGA >site_442 TGCGAAAAATGA >site_443 CTAGATAAATGT >site_444 CTAGTAAAATAT >site_445 GGAGAAAAAACA >site_446 TGAGAAAAAATT >site_447 GGAGAAAACTAA >site_448 CGAGTAAAATAG >site_449 CAAGAAAAGTCC >site_450 AAAGAAAAAAGT >site_451 AAAGAAAAACAA >site_452 ATAGAAAACTGC >site_453 GATGAAAAATAT >site_454 TTAGAAAAACTT >site_455 ATAGAAAAGTAT >site_456 CCGGAAAAATCA >site_457 TAAGAAAATTCG >site_458 AATGAAAAATGA >site_459 ACAGACAAATAT >site_460 TGAGAAAATTAC >site_461 ATAGAAAAAGAT >site_462 TAAGAAAAACGA >site_463 ATAGAAAAAGAT >site_464 TCAGAAAAAATA >site_465 AAAGAAAACTGT >site_466 ACAGAAAAAATT >site_467 AGAGAAAAAGAT a 2 5 1 2 20 0 15 0 0 19 3 1 0 0 3 7 6 c 4 3 15 0 0 1 0 22 1 1 17 1 1 1 0 7 3 g 11 10 5 20 1 21 2 0 20 1 1 3 3 20 19 4 11 t 5 4 1 0 1 0 5 0 1 1 1 17 18 1 0 4 2 // ; Sites 22 >site_0 GACGAGACGAGTTTGCG >site_1 GATGAGACGACTTGGAG >site_2 CGCGAGTCGACATGGCC >site_3 GGAGAGACGACTGGGAC >site_4 GACGAGACGCCTGGGTA >site_5 GCCGAGACGAATTGAAG >site_6 GGCGAGTCGACTCGGGA >site_7 GGGGAGACGACTGGGAG >site_8 TTCGACTCGACTTGGCG >site_9 AGGAAGACGACTTGGTT >site_10 GTCGAGTCGACGTGGCA >site_11 TGCGAGACTAATTGGAA >site_12 CCGGAGACGACTTGAGG >site_13 CGGGAGACGACTTGACC >site_14 GCCGTGACGGCTTGGAG >site_15 TACGAGTCGACGTGGGG >site_16 GGGAAGACGACTTGGTG >site_17 AGCGGGACGACGTGGTG >site_18 TACGAGACGACCTCGCT >site_19 CTCGAGGCGTCTTGGCA >site_20 GGCGAGGCGAATTGGGG >site_21 TTCGAGACCATTTGGAA ; Host name baobab.eead.csic.es ; Job started 2021-02-25.191743 ; Job done 2021-02-25.191743 ; Seconds 0.18 ; user 0.18 ; system 0.02 ; cuser 0 ; csystem 0