; convert-matrix  -v 1 -i D4/regulonD4.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D4/regulonD4.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	D4/regulonD4.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D4/regulonD4.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	2	2	5	3	2	1	0	0	8	0	0	0	0	0	1	2	2	2
c	3	3	5	0	5	6	0	7	0	0	8	0	8	0	1	1	0	3	5
g	2	3	1	2	0	0	6	0	8	0	0	8	0	8	7	1	5	1	1
t	1	0	0	1	0	0	1	1	0	0	0	0	0	0	0	5	1	2	0
//
; Sites	8
>site_0
TGCGCAGCGACGCGGTGTG
>site_1
GCGAACACGACGCGGTGGA
>site_2
CACGCCGCGACGCGGTTTC
>site_3
AACTACGCGACGCGGCGCC
>site_4
GCAAACGCGACGCGGTACC
>site_5
CGCACAGTGACGCGGTGAC
>site_6
ACAACCGCGACGCGCAGCA
>site_7
CGCACCTCGACGCGGGAAC
a	8	10	3	3	18	13	24	2	0	0	0	0	1	3	6
c	7	5	3	3	3	4	0	22	0	23	0	0	0	4	9
g	7	7	17	16	1	5	0	0	24	1	24	23	3	6	4
t	2	2	1	2	2	2	0	0	0	0	0	1	20	11	5
//
; Sites	24
>site_0
AGAGAGACGCGGTTC
>site_1
GTGAAAACGCGGTTC
>site_2
CGCGACACGCGGTGC
>site_3
AAGGACACGCGGTCG
>site_4
TGGGAAACGCGTTAA
>site_5
CAGCAGACGCGGTGA
>site_6
AAGGTAAAGCGGTGA
>site_7
GCGGAAAAGCGGTGG
>site_8
CAGGCGACGCGGTTT
>site_9
GCGGTCACGCGGTAC
>site_10
AAGCACACGCGGTGC
>site_11
CAACAAACGCGGTGA
>site_12
AGGGGAACGGGGTTG
>site_13
CAGGAGACGCGGTTA
>site_14
GGAAAAACGCGGTTT
>site_15
AACAAAACGCGGTCT
>site_16
AAGGCAACGCGGATA
>site_17
AGGGATACGCGGTTT
>site_18
GACGCAACGCGGTTT
>site_19
CCGGAGACGCGGTTC
>site_20
GTGGAAACGCGGGAC
>site_21
GGGTAAACGCGGGCG
>site_22
CCGTATACGCGGTTC
>site_23
TCTGAAACGCGGGCC
a	6	5	1	13	1	17	0	0	0	2	1	0	4	5
c	4	3	14	2	15	1	18	0	17	0	0	1	4	5
g	5	7	3	2	2	0	0	18	0	16	17	1	8	5
t	3	3	0	1	0	0	0	0	1	0	0	16	2	3
//
; Sites	18
>site_0
TTCCCACGCGGTGG
>site_1
GCGACACGCGGTGC
>site_2
AGGACACGCGGTCG
>site_3
CACACACGCAGTAA
>site_4
GACAGACGCGGTCA
>site_5
GGCGCACGCGGTAT
>site_6
AGCAGACGCGGTGA
>site_7
CGGTCACGCGGTAC
>site_8
ATCACACGCGGCGG
>site_9
AGCACACGCGGTGC
>site_10
AGCGCACGCGGTCT
>site_11
AACAAACGCGGTGA
>site_12
CCCACACGTGGTGG
>site_13
TACACACGCGATTC
>site_14
TAACCACGCGGTAC
>site_15
GGCACACGCGGGGA
>site_16
GTCACCCGCGGTTT
>site_17
CCCACACGCAGTCG
a	12	13	0	4	63	3	1	1	1	0	5	12	11
c	22	14	64	7	3	63	1	67	2	56	4	19	22
g	17	26	3	56	3	0	66	1	64	11	4	16	23
t	18	16	2	2	0	3	1	0	2	2	56	22	13
//
; Sites	69
>site_0
ACCAACGCGCTTT
>site_1
CGCGACACGCTTC
>site_2
CCCGACGCGCGTG
>site_3
TCCGACGCGCGTG
>site_4
CTCGGCGCGCTTG
>site_5
AGCGACGCGGTGT
>site_6
GGCGCCGCGCTTA
>site_7
TGCGACGCGCCCA
>site_8
GCCGACGCGCGCT
>site_9
GTCGACCCGCTGG
>site_10
TGCCACGCGCTTT
>site_11
AACCACGCGCTGC
>site_12
CACGACGCGGTGG
>site_13
AGCGACGGGCTGT
>site_14
ATCAACGCGCTGA
>site_15
GCCGACGCTCTCA
>site_16
CGGGACGCGCTGC
>site_17
CACGGCGCGCTAG
>site_18
GCCGACGCGGTAT
>site_19
AACGAAGCGCTCC
>site_20
TTCCACGCGCTTC
>site_21
GGCGACGCGGTTT
>site_22
CTCCACGCGCTTC
>site_23
AGCGACGCGCTAC
>site_24
AACGACGCGCCTA
>site_25
TACGACGAGCTAG
>site_26
CGCGACGCGGTTT
>site_27
TTCGCCGCGCTGG
>site_28
TCCGACGCACTCG
>site_29
GGCGACGCGCCAA
>site_30
GACGACGCGGTCA
>site_31
TTCGACGCGGTTC
>site_32
GGCGACGCGTTGT
>site_33
GCCGACGCGGTCC
>site_34
TGCGACGCGCACG
>site_35
CACAACGCGCTTC
>site_36
CCCGACGCGCACC
>site_37
CGCGACGCGGTAC
>site_38
CGCGACGCGCCCC
>site_39
TTCGATGCGCTTG
>site_40
CACGGCGCGCTGG
>site_41
CTTGACGCGCTTG
>site_42
CGCGACGCGCTTC
>site_43
TTCCACGCGCTCG
>site_44
TCCCACGCGCTTG
>site_45
CTCGACGCGGTAA
>site_46
TTCGATGCGCTAG
>site_47
TGGGACGCGCTGG
>site_48
CCCCACGCGCTCC
>site_49
GGCTACGCGCTCG
>site_50
TCCAACGCGCTCC
>site_51
TGCGATGCGCTTG
>site_52
GCCGACGCGCACA
>site_53
GTCGACGCCCTTT
>site_54
GACGAAGCGCTAT
>site_55
GGTGACGCGCTCC
>site_56
CACTACGCGCTAC
>site_57
CGCGACGCGCTCC
>site_58
AACGACGCGCAAA
>site_59
CGCGACGCGCAGC
>site_60
CGCGACGCCCTTC
>site_61
AGCGACGCGGTCT
>site_62
TTCGACGCGCGGC
>site_63
ATCGCCGCGCTCG
>site_64
ATCGACGCGTTGA
>site_65
GCCGAAGCGCTAG
>site_66
GGGGACGCGCTGT
>site_67
TGCGACTCGCTTG
>site_68
CACGACGCTCTGG
a	8	7	2	2	35	1	0	0	1	1	0	4	10	6
c	15	12	29	3	4	38	0	40	0	0	35	5	11	11
g	11	11	5	35	0	0	40	0	38	4	3	29	12	15
t	6	10	4	0	1	1	0	0	1	35	2	2	7	8
//
; Sites	40
>site_0
ATCGACGCGTCTAC
>site_1
GTAGACGCGTCGAT
>site_2
GGCCACGCGTCGGA
>site_3
TCCGACGCGTGGCC
>site_4
TTTGACGCGTCGTG
>site_5
CACGACGCGTCAAA
>site_6
AACGACGCGACGGT
>site_7
ACCGTCGCGTCGTT
>site_8
GCCGCCGCGTCGGC
>site_9
GCCGACGCGGCGGC
>site_10
CGCGACGCGTGGCG
>site_11
CGCCACGCGTCGCG
>site_12
CGGGACGCGTCCGG
>site_13
CCGGACGCGTCCCG
>site_14
CGCGACGCGGCGCC
>site_15
GGCGCCGCGTCGCG
>site_16
TACAACGCGTCGCC
>site_17
GGCGACGCGTTGTA
>site_18
GCCGACGCGGCGCC
>site_19
GGCGCCGCGTCGGC
>site_20
CTCGACGCGTCGAG
>site_21
CTCGACGCGTCGAG
>site_22
GAAGACGCGTCATC
>site_23
GATGACGCGTCTTC
>site_24
ATCGACGCGTCAGG
>site_25
CCTGACGCGTCGAT
>site_26
CGCGACGCATCGTG
>site_27
CACGATGCGTCGCG
>site_28
AGCGAAGCGTCGAG
>site_29
CTCGACGCTTCGCT
>site_30
TCCCACGCGTCGGT
>site_31
ACCGACGCGTGGGA
>site_32
GCGGACGCGTCCAA
>site_33
TTGGACGCGTCCGC
>site_34
ACCGACGCGGCGGG
>site_35
CCCGCCGCGTCGGT
>site_36
TTCAACGCGTCGAT
>site_37
ATCGACGCGTTGAA
>site_38
CAGGACGCGTCACG
>site_39
CGTGACGCGTCCTG
; Host name	baobab.eead.csic.es
; Job started	2021-02-25.191944
; Job done	2021-02-25.191944
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0