; convert-matrix  -v 1 -i D4/regulonD4.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D4/regulonD4.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	D4/regulonD4.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D4/regulonD4.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	3	6	0	13	0	16	0	1	0	0	0	2	0	1	1	5
c	6	3	17	3	12	0	16	1	16	2	2	4	2	0	8	4
g	4	8	0	2	4	2	2	16	1	16	0	12	3	17	3	6
t	5	1	1	0	2	0	0	0	1	0	16	0	13	0	6	3
//
; Sites	18
>site_0
GGCCCACCCGTGTGCC
>site_1
GGCACACGGGTGGGCC
>site_2
GCCACACGCCTCTGTG
>site_3
CACAGAGGCGTGTGGC
>site_4
AGCACACGCGTGGAGG
>site_5
CCTCCACGCGTGTGCT
>site_6
CCCACACGCGCGCGTC
>site_7
GACGCGCGCGTGTGGG
>site_8
TGCAGAGGCGTGTGAG
>site_9
CTCACACGCCTCTGCA
>site_10
CACACACGCGTCGGTG
>site_11
CACCGACGCGTGTGTG
>site_12
AGCGCGCGCGTGTGCT
>site_13
AGCACACGCGCGCGCT
>site_14
TGCATACGCGTCTGTA
>site_15
TACAGACGCGTATGCA
>site_16
TACATACACGTGTGCA
>site_17
TGCACACGTGTATGTA
a	1	1	0	2	0	3	1	0	1	0	0	0	0	0	0	0	0	0	1	0
c	1	2	3	1	2	0	2	0	1	0	0	3	1	0	0	0	1	0	1	1
g	1	0	0	0	0	0	0	3	0	3	0	0	2	3	0	3	0	3	0	1
t	0	0	0	0	1	0	0	0	1	0	3	0	0	0	3	0	2	0	1	1
//
; Sites	3
>site_0
ACCATAAGAGTCCGTGTGAT
>site_1
GCCCCACGTGTCGGTGTGTG
>site_2
CACACACGCGTCGGTGCGCC
a	0	3	1	1	6	8	1	0	0	0	1	0	1	0	0	2
c	5	4	1	8	2	3	10	0	10	0	0	1	0	1	6	1
g	2	3	3	2	1	0	0	11	1	11	0	10	1	9	3	4
t	4	1	6	0	2	0	0	0	0	0	10	0	9	1	2	4
//
; Sites	11
>site_0
TAGGTACGCGTGTGGG
>site_1
CGTCACCGCGTCTGCT
>site_2
CCTCCACGCGTGTGCT
>site_3
TGACTACGCGTGTTGA
>site_4
GCGCACCGCGTGTGCT
>site_5
GGGAAACGCGTGAGGT
>site_6
TCTGAAAGCGTGTGCA
>site_7
CACCGACGCGTGTGTG
>site_8
TTTCAACGGGTGGGTG
>site_9
CCTCAACGCGAGTCCG
>site_10
CATCCCCGCGTGTGCC
a	2	5	2	2	4	0	0	13	0	1	0	0	0	0	0	0	1	3
c	5	4	3	6	6	13	10	0	12	2	12	0	0	0	1	1	7	4
g	5	3	5	3	2	0	2	0	1	10	0	12	0	13	4	11	3	3
t	1	1	3	2	1	0	1	0	0	0	1	1	13	0	8	1	2	3
//
; Sites	13
>site_0
CCACACCACGCGTGGGCC
>site_1
ACGGCCCACCCGTGTGCC
>site_2
GTTAACCACCCGTGTGGA
>site_3
TAGGCCCACGCGTGGTAA
>site_4
CGTTACCACGCGTGGGCC
>site_5
CGCCTCCACGCGTGTGCT
>site_6
AATTCCTACGCTTGTGTG
>site_7
GACGGCCACGCGTGCGGC
>site_8
GAACCCCAGGCGTGGGCG
>site_9
CCGCCCGACGCGTGTCCT
>site_10
CGCACCGACGCGTGTGTG
>site_11
GCGCGCCACGTGTGTGGT
>site_12
GAGCACCACACGTGTGCA
; Host name	baobab.eead.csic.es
; Job started	2021-02-25.191841
; Job done	2021-02-25.191841
; Seconds	0.16
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0