; convert-matrix  -v 1 -i D5/regulonD5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D5/regulonD5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	D5/regulonD5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D5/regulonD5.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	1	0	0	0	0	0	2	0	3	3	0	0	0	0	0	0	1	2	3	0	0
c	2	0	3	0	1	3	3	0	0	0	0	3	3	1	0	3	2	1	0	0	2	3
g	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	1	1	0	0	0
t	0	2	0	3	2	0	0	1	0	0	0	0	0	2	3	0	0	0	0	0	1	0
//
; Sites	3
>site_0
ATCTCCCAGAACCTTCCGGATC
>site_1
CACTTCCAGAACCCTCCCAACC
>site_2
CTCTTCCTGAACCTTCGAAACC
a	5	1	1	0	0	0	0	0	7	0	8	7	0	1	1	1
c	2	2	5	6	1	0	7	1	0	1	0	0	2	1	4	0
g	0	4	1	2	0	0	1	0	1	7	0	1	6	5	2	2
t	1	1	1	0	7	8	0	7	0	0	0	0	0	1	1	5
//
; Sites	8
>site_0
TGTGTTCTAGAAGGCT
>site_1
AGCCTTCTAGAACACA
>site_2
CCCCTTCTGGAAGTCT
>site_3
AGACTTCCAGAAGGGG
>site_4
AACCCTGTAGAAGGAG
>site_5
CTCCTTCTACAGGGTT
>site_6
AGGGTTCTAGAAGGGT
>site_7
ACCCTTCTAGAACCCT
a	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	1	1	0	1	0
c	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
g	1	1	0	0	0	0	1	0	0	1	1	0	0	0	0	1	1	0	0	1	0	1
t	0	0	1	1	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
//
; Sites	1
>site_0
GGTTTCGAAGGTTCAGGAAGAG
a	7	3	1	1	1	0	0	0	9	1	11	10	0	0	3	1
c	2	3	5	10	1	0	11	11	0	0	0	0	1	3	4	2
g	2	2	4	0	0	0	0	0	2	10	0	0	8	8	2	3
t	0	3	1	0	9	11	0	0	0	0	0	1	2	0	2	5
//
; Sites	11
>site_0
GGGCTTCCAGATGGTT
>site_1
AACCATCCAGAAGCGG
>site_2
CTGCTTCCAAAAGGCT
>site_3
ACCCTTCCAGAACCAC
>site_4
AGACTTCCAGAAGGGG
>site_5
AACCTTCCGGAAGCAG
>site_6
CTGCTTCCGGAAGGTT
>site_7
ACTCTTCCAGAATGCT
>site_8
AACATTCCAGAAGGCA
>site_9
GCGCCTCCAGAAGGAT
>site_10
ATCCTTCCAGAATGCC
; Host name	baobab.eead.csic.es
; Job started	2021-02-25.191904
; Job done	2021-02-25.191904
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0
;	csystem	0