; convert-matrix  -v 1 -i D6/regulonD6.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D6/regulonD6.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	D6/regulonD6.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D6/regulonD6.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	13	6	0	28	0	28	8	10	11	0	28	0	11	9
c	5	9	28	0	28	0	8	7	5	28	0	28	7	9
g	1	7	0	0	0	0	6	5	4	0	0	0	3	2
t	9	6	0	0	0	0	6	6	8	0	0	0	7	8
//
; Sites	28
>site_0
CGCACAGCACACGT
>site_1
AACACAGGCCACCC
>site_2
CACACATGACACAT
>site_3
ACCACACCCCACTT
>site_4
TACACATTGCACAC
>site_5
TACACAGTTCACTC
>site_6
TGCACATATCACGT
>site_7
CTCACACAACACTC
>site_8
AACACAATACACGA
>site_9
AGCACAAATCACAA
>site_10
TCCACACAACACAG
>site_11
TCCACAAGGCACAA
>site_12
CCCACATCACACCA
>site_13
AACACAAATCACAT
>site_14
AGCACAACACACAA
>site_15
ACCACACCACACCC
>site_16
TCCACACCTCACTC
>site_17
ATCACATTCCACCA
>site_18
ACCACACACCACCA
>site_19
TTCACATGCCACAT
>site_20
ATCACACTTCACCT
>site_21
ACCACAGTACACTA
>site_22
AGCACAAAGCACTA
>site_23
TGCACAGAACACAT
>site_24
TTCACACATCACTG
>site_25
GCCACAACACACAC
>site_26
CTCACAAGTCACAC
>site_27
AGCACAGAGCACCC
a	8	7	30	0	0	5	3	8	5	10	0	30	0	7	10
c	9	13	0	30	0	2	6	4	7	8	30	0	30	6	4
g	6	3	0	0	30	2	12	12	2	6	0	0	0	12	4
t	7	7	0	0	0	21	9	6	16	6	0	0	0	5	12
//
; Sites	30
>site_0
TCACGTTGTTCACGT
>site_1
ATACGAGGAGCACAC
>site_2
CCACGACGACCACGA
>site_3
TCACGTTGTGCACGT
>site_4
ACACGACACGCACCT
>site_5
AAACGTTTTGCACGT
>site_6
CTACGCTCGACACAT
>site_7
GTACGTCATCCACTT
>site_8
CAACGTTTTCCACCT
>site_9
CAACGTTGTGCACTG
>site_10
GTACGAGGCCCACCT
>site_11
CGACGTCAAACACAC
>site_12
GAACGTATTCCACCG
>site_13
TTACGGGACCCACTA
>site_14
TCACGAGATACACGA
>site_15
ATACGGCGGCCACTA
>site_16
CCACGCGATACACGA
>site_17
CCACGTGGCGCACTA
>site_18
TCACGTGTTCCACAA
>site_19
CCACGTACTACACGG
>site_20
GTACGTGGTTCACAT
>site_21
GGACGTGGTTCACGG
>site_22
TCACGTTGCACACCT
>site_23
ACACGTTTATCACCA
>site_24
AAACGTGACACACGC
>site_25
GGACGTGATACACGA
>site_26
AAACGTACATCACAT
>site_27
TAACGTGTTACACAT
>site_28
ACACGTTCTTCACGA
>site_29
CCACGTCGCACACGC
a	3	7	18	0	2	12	9	11	5	4	0	4	6	10	1	3	6	4	4	19	18	0	4	6
c	6	4	1	16	0	5	4	7	3	3	10	9	10	6	11	2	3	7	8	0	1	1	5	4
g	7	3	0	3	16	0	6	1	3	6	1	5	1	2	0	7	4	3	5	0	0	0	3	3
t	3	5	0	0	1	2	0	0	8	6	8	1	2	1	7	7	6	5	2	0	0	18	7	6
//
; Sites	19
>site_0
CAACGCGCAGTCCACGTTCAATTG
>site_1
TTACGCGACACGAACGAACAATTA
>site_2
GCACGACATTTCCCCATCCAATGT
>site_3
CGAGGAAATTCCAATACCGAATCC
>site_4
CGACGCCACAGCCATATCGAATCC
>site_5
ATCCGAGATGCGAGCGTTAAATCT
>site_6
GAACGAGGTCCACCCGGAGAATCA
>site_7
CAACGCAAAGCCCACGAGGACTAC
>site_8
ATACAAACGTTCACCTACAAATAT
>site_9
TTACGAACGTTGCCCCACTAACGA
>site_10
CAACGTACAGTCCACGTTCAATTG
>site_11
GCAGGACATTCACATGCTAAATTA
>site_12
TAACGAGCTATTTATTGCCAATAG
>site_13
GAACGAGAGGTGACATGGCAATCA
>site_14
ACACATCATCCACGCTTCCAATTT
>site_15
GAAGGAACCGCCCACTGTTAATTT
>site_16
CCACGCAAACCAGCTTCACAATGC
>site_17
GTACGAACAACCTTTTAGAAATAA
>site_18
GGACTAAATTTGAATCAAGAATTT
a	1	2	0	4	0	3	0	0	2	1	4	0	3	0	0	0	1	1	0	1	2	0	1	0	1	0
c	1	0	4	0	3	0	0	0	1	3	0	2	0	0	0	0	1	1	1	1	1	3	1	1	1	1
g	0	0	0	0	0	1	0	4	0	0	0	1	1	0	4	1	1	0	2	0	1	0	1	1	0	1
t	2	2	0	0	1	0	4	0	1	0	0	1	0	4	0	3	1	2	1	2	0	1	1	2	2	2
//
; Sites	4
>site_0
CACACATGACACATGTATGTATATTG
>site_1
TACATGTGTCATGTGTGCTTGCCCAT
>site_2
ATCACATGAAAGATGTCTGACCTGCC
>site_3
TTCACATGCCACATGGTACCACGTTT
a	8	11	1	4	2	13	0	6	6	8	1	0	11	0	13	1	4	4	8	6	9	5	19	17	10	7
c	5	4	2	3	22	0	11	0	6	3	11	11	0	14	0	9	2	4	2	5	4	1	2	4	6	1
g	2	4	2	13	0	11	0	18	8	3	6	1	12	1	11	0	13	7	6	5	5	2	2	1	4	5
t	9	5	19	4	0	0	13	0	4	10	6	12	1	9	0	14	5	9	8	8	6	16	1	2	4	11
//
; Sites	24
>site_0
TGTGCATGGTGCGTACGGTGCGATGT
>site_1
AACGCGCAGTCCACGTTCAATTGAAG
>site_2
AGTGCATGTAGTATATGACTACAGAA
>site_3
ATTCCACACCCTACACGGTTATAACT
>site_4
CATGCGTAATCTATATTTGAGAAAAT
>site_5
TTGGCATGGTCTGCACCGTGATCATC
>site_6
GAATCACACCCTACGTAACCTTAATT
>site_7
TGTCCGTGAGTTGTATGCGCGTACCT
>site_8
TATGCGCGTACCTCGTGTTCTAAAGA
>site_9
CATGCGCGCGGTGGGTATTAATTAAT
>site_10
CATACGTGCATTGCGCTTGGCAAAGG
>site_11
TTTTCATGATGTGTATGCTACTACTA
>site_12
GCGGCGCGCAGTGCGTGGATTTATAG
>site_13
TATGAACAGTCCGTGCCTACAGAAAG
>site_14
AATAAGTGACGTGTATTTGTATAAAA
>site_15
AATGCATGATTGGCATGTGTATAATT
>site_16
AGTACGTGGTTCACATGGAAAAAACT
>site_17
ACTGCACGTTTCACGCGGGGGAACGA
>site_18
CTTTCATGTACTATACTATTTTCAAT
>site_19
TCTACATGGGCCACATATATGTAAAA
>site_20
AATCCACGCACCGTGCGTACGTGACA
>site_21
CATGCACAGAACACATGCTACTAACT
>site_22
TTCTCGTGATCCGCGCAGATTTAAAT
>site_23
TCTGCGCGGATCACGAGAAGATACCG
; Host name	baobab.eead.csic.es
; Job started	2021-02-25.191907
; Job done	2021-02-25.191907
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0