; convert-matrix  -v 1 -i D9/regulonD9.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D9/regulonD9.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	D9/regulonD9.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D9/regulonD9.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	1	7	0	6	0	1	1	1	1	1	2	3	1	2	0	0	0	7	1	3
c	1	2	0	0	0	4	1	1	3	2	3	1	1	2	1	2	0	1	0	2	2
g	2	1	0	0	0	3	0	3	0	4	3	1	2	3	2	1	0	6	0	2	1
t	3	3	0	7	1	0	5	2	3	0	0	3	1	1	2	4	7	0	0	2	1
//
; Sites	7
>site_0
GGATTGTGTGCCCGGCTGAGA
>site_1
TCATACTTAGCTAGGGTGATC
>site_2
ATATAGACCGGGAAATTGAGA
>site_3
CTATACCTCGGTGCTTTGACG
>site_4
GAATAGTGTCAAACACTGAAA
>site_5
TCATACTATAGATGCTTCATT
>site_6
TTATACTGCCCTGTTTTGACC
a	0	0	0	0	0	0	0	2	0	2	0	0	2	1	0	0	0	0
c	2	3	4	0	1	3	3	1	4	0	3	4	1	0	0	4	1	3
g	2	0	0	4	0	1	0	1	0	0	1	0	1	0	0	0	1	0
t	0	1	0	0	3	0	1	0	0	2	0	0	0	3	4	0	2	1
//
; Sites	4
>site_0
GTCGTCCACACCAATCTC
>site_1
GCCGTCTCCTCCATTCCC
>site_2
CCCGCCCACACCGTTCGT
>site_3
CCCGTGCGCTGCCTTCTC
a	1	1	1	0	0	2	3	3	0	2	0	0	0	1	2	0	0	0	0	1	2	3	0	1	0	0	1
c	2	2	0	3	4	0	1	0	2	0	0	0	1	1	1	1	1	3	0	0	0	0	1	1	1	1	1
g	0	1	2	1	0	2	0	1	0	2	3	0	1	2	1	0	0	1	4	0	2	0	1	2	1	0	2
t	1	0	1	0	0	0	0	0	2	0	1	4	2	0	0	3	3	0	0	3	0	1	2	0	2	3	0
//
; Sites	4
>site_0
CAGCCAAACGTTTGCTCCGTGACACTA
>site_1
CCGGCGAGTGGTGGGTTGGTGTGGGTC
>site_2
TCACCAAACAGTTCACTCGTAATCTTG
>site_3
AGTCCGCATAGTCAATTCGAAATGTCG
; Host name	baobab.eead.csic.es
; Job started	2021-02-16.172913
; Job done	2021-02-16.172913
; Seconds	0.16
;	user	0.16
;	system	0.03
;	cuser	0
;	csystem	0