; convert-matrix  -v 1 -i D9/regulonD9.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o D9/regulonD9.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	D9/regulonD9.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	D9/regulonD9.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	2	6	0	16	0	0	0	0	6	3
c	4	3	16	0	16	0	0	0	1	7
g	7	1	0	0	0	16	0	16	3	4
t	3	6	0	0	0	0	16	0	6	2
//
; Sites	16
>site_0
GACACGTGAC
>site_1
GTCACGTGTC
>site_2
CTCACGTGTA
>site_3
TACACGTGAG
>site_4
CACACGTGAA
>site_5
TTCACGTGTG
>site_6
ACCACGTGTC
>site_7
GACACGTGGT
>site_8
GACACGTGGC
>site_9
GCCACGTGTC
>site_10
ATCACGTGAA
>site_11
TTCACGTGAT
>site_12
GTCACGTGGG
>site_13
CCCACGTGAC
>site_14
GACACGTGCG
>site_15
CGCACGTGTC
a	0	1	5	0	0	5	0	5	0	3	2
c	1	2	0	5	5	0	5	0	5	0	1
g	1	2	0	0	0	0	0	0	0	2	0
t	3	0	0	0	0	0	0	0	0	0	2
//
; Sites	5
>site_0
TGACCACACAT
>site_1
GCACCACACGC
>site_2
CCACCACACAA
>site_3
TGACCACACAA
>site_4
TAACCACACGT
a	24	11	0	0	0	60	60	19	18
c	11	11	0	0	0	0	0	7	11
g	11	24	60	60	60	0	0	24	19
t	14	14	0	0	0	0	0	10	12
//
; Sites	60
>site_0
CTGGGAAGT
>site_1
ATGGGAATG
>site_2
TTGGGAATG
>site_3
AGGGGAACG
>site_4
AGGGGAACG
>site_5
ATGGGAAGG
>site_6
AAGGGAAGG
>site_7
AGGGGAAAC
>site_8
ATGGGAACC
>site_9
CGGGGAAGA
>site_10
TTGGGAACA
>site_11
ATGGGAAGA
>site_12
TGGGGAATG
>site_13
CCGGGAAAT
>site_14
GTGGGAAAC
>site_15
GGGGGAATT
>site_16
ATGGGAAGA
>site_17
GTGGGAAAG
>site_18
CGGGGAAGA
>site_19
ACGGGAAGA
>site_20
AGGGGAAAC
>site_21
TGGGGAAAG
>site_22
GCGGGAAGG
>site_23
TGGGGAAGG
>site_24
CGGGGAAGG
>site_25
CAGGGAAGC
>site_26
CCGGGAAAA
>site_27
AAGGGAAAA
>site_28
AGGGGAAGA
>site_29
GTGGGAATT
>site_30
AGGGGAAGG
>site_31
TCGGGAAAC
>site_32
AGGGGAATG
>site_33
CGGGGAATT
>site_34
CGGGGAAGC
>site_35
ATGGGAAGA
>site_36
ATGGGAAAT
>site_37
AAGGGAAGA
>site_38
AGGGGAAAG
>site_39
GGGGGAAGA
>site_40
CCGGGAACT
>site_41
CGGGGAAGT
>site_42
GAGGGAAGC
>site_43
AGGGGAAAA
>site_44
TCGGGAACG
>site_45
TTGGGAATT
>site_46
AAGGGAAAC
>site_47
AAGGGAATC
>site_48
AAGGGAAAA
>site_49
TCGGGAAAA
>site_50
GAGGGAAGA
>site_51
TCGGGAACG
>site_52
ACGGGAAGC
>site_53
TGGGGAAGA
>site_54
TGGGGAATT
>site_55
TGGGGAAAG
>site_56
GAGGGAAGA
>site_57
TCGGGAAAG
>site_58
GGGGGAAAT
>site_59
GAGGGAAAT
a	14	8	50	0	0	0	0	21	17
c	13	10	0	0	0	0	0	6	8
g	14	24	0	50	50	50	50	11	20
t	9	8	0	0	0	0	0	12	5
//
; Sites	50
>site_0
AAAGGGGTA
>site_1
CTAGGGGCT
>site_2
CTAGGGGTA
>site_3
CTAGGGGAA
>site_4
CGAGGGGTC
>site_5
GCAGGGGAA
>site_6
ATAGGGGCG
>site_7
AGAGGGGGA
>site_8
TGAGGGGGC
>site_9
CAAGGGGAA
>site_10
TGAGGGGTG
>site_11
ACAGGGGGT
>site_12
AGAGGGGGC
>site_13
AGAGGGGAG
>site_14
GGAGGGGCA
>site_15
GTAGGGGGG
>site_16
AGAGGGGAG
>site_17
GAAGGGGGT
>site_18
ATAGGGGTG
>site_19
ATAGGGGTG
>site_20
TCAGGGGTA
>site_21
CCAGGGGAA
>site_22
CGAGGGGAG
>site_23
GGAGGGGAG
>site_24
TCAGGGGAC
>site_25
CGAGGGGTC
>site_26
AGAGGGGAA
>site_27
AGAGGGGTG
>site_28
CCAGGGGAA
>site_29
TTAGGGGCG
>site_30
GAAGGGGAA
>site_31
TAAGGGGAA
>site_32
GGAGGGGAG
>site_33
GGAGGGGAG
>site_34
GGAGGGGAG
>site_35
GAAGGGGGT
>site_36
TCAGGGGCA
>site_37
AAAGGGGAC
>site_38
CGAGGGGCA
>site_39
TGAGGGGTG
>site_40
TCAGGGGAA
>site_41
GGAGGGGGG
>site_42
CGAGGGGTG
>site_43
CCAGGGGAG
>site_44
CGAGGGGGT
>site_45
GAAGGGGAG
>site_46
GCAGGGGGC
>site_47
AGAGGGGGA
>site_48
AGAGGGGAC
>site_49
GGAGGGGTG
a	8	11	45	0	0	0	45	7	9
c	10	15	0	0	45	0	0	13	12
g	19	16	0	45	0	45	0	16	15
t	8	3	0	0	0	0	0	9	9
//
; Sites	45
>site_0
CTAGCGATT
>site_1
GAAGCGACC
>site_2
GAAGCGAAA
>site_3
GAAGCGAAA
>site_4
GCAGCGAGA
>site_5
TGAGCGAAT
>site_6
GGAGCGAAA
>site_7
TGAGCGAGT
>site_8
TCAGCGAGA
>site_9
GGAGCGATG
>site_10
AAAGCGATG
>site_11
GCAGCGAGC
>site_12
TGAGCGAAT
>site_13
AAAGCGAGC
>site_14
GGAGCGAGT
>site_15
CCAGCGATG
>site_16
TCAGCGACC
>site_17
ACAGCGACC
>site_18
AAAGCGACG
>site_19
AGAGCGACG
>site_20
GGAGCGAGG
>site_21
GCAGCGATG
>site_22
AGAGCGAGA
>site_23
GCAGCGACA
>site_24
ACAGCGACA
>site_25
GAAGCGACC
>site_26
GCAGCGATC
>site_27
GCAGCGATG
>site_28
CGAGCGATC
>site_29
CGAGCGAGC
>site_30
ATAGCGATC
>site_31
CAAGCGACG
>site_32
GTAGCGACG
>site_33
CAAGCGACG
>site_34
TAAGCGAGC
>site_35
TCAGCGAGG
>site_36
CGAGCGAGT
>site_37
CAAGCGAGT
>site_38
GCAGCGAGC
>site_39
GGAGCGAGG
>site_40
CGAGCGACG
>site_41
GGAGCGACG
>site_42
GGAGCGAAA
>site_43
CCAGCGAAT
>site_44
TCAGCGAGT
; Host name	baobab.eead.csic.es
; Job started	2021-02-16.172854
; Job done	2021-02-16.172854
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0