; convert-matrix  -v 1 -i W10/regulonW10.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W10/regulonW10.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Input files
;	input	W10/regulonW10.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W10/regulonW10.rm.fna.peaks-rm/results/oligos_5-7nt/peaks_oligos-2str-noov_5-7nt_mvk2_2_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	6	2	8	2	0	21	0	0	0	20	1	17	4	9	3
c	5	10	5	18	22	0	2	22	22	1	21	2	17	5	9
g	4	6	8	2	0	1	20	0	0	0	0	0	1	5	6
t	7	4	1	0	0	0	0	0	0	1	0	3	0	3	4
//
; Sites	22
>site_0
AGAACAGCCACACAT
>site_1
CCTCCGGCCACACGC
>site_2
TCGCCAGCCACAAGG
>site_3
AAACCAGCCACAATC
>site_4
TGGCCACCCACACTG
>site_5
TCACCAGCCACACCT
>site_6
ATCCCAGCCACCCAA
>site_7
GGGCCAGCCACAGAA
>site_8
TCGCCAGCCACCCAG
>site_9
TCACCAGCCAAACCA
>site_10
CACCCAGCCCCACAC
>site_11
CGGGCAGCCACACGC
>site_12
TTAACAGCCACACGC
>site_13
CTGCCAGCCACACAC
>site_14
GCGCCAGCCTCACGC
>site_15
AGCCCACCCACACCG
>site_16
ACACCAGCCACTCCT
>site_17
GCAGCAGCCACACAG
>site_18
CGACCAGCCACTCTG
>site_19
TTCCCAGCCACAAAT
>site_20
ACGCCAGCCACAAAC
>site_21
GCCCCAGCCACTCCC
a	7	7	0	1	0	0	0	0	0	2	0	0	7	3
c	10	5	1	3	2	23	1	23	1	20	20	23	5	4
g	4	5	23	20	20	1	23	1	23	2	3	1	5	10
t	3	7	0	0	2	0	0	0	0	0	1	0	7	7
//
; Sites	24
>site_0
ATGGGCGCGCGCTG
>site_1
CAGCGCGCGCCCAT
>site_2
CTGGGCGCGGCCTT
>site_3
AAGGCCGCGCCCAG
>site_4
CTGGGCGCGCCCTG
>site_5
CAGGGCGCGCCCAG
>site_6
GTGCGCGCGCCCGT
>site_7
ACGGGCGCGCGCAC
>site_8
CTGGGGGCGCCCTG
>site_9
CAGGGCGCCCCCAG
>site_10
AGGGGCGCGCGCCA
>site_11
TGGCGCGCGCCCCT
>site_12
TGGGGCCCGCCCCC
>site_13
GGGGGCGGGCCCCA
>site_14
CCCGGCGCGCCCTC
>site_15
GAGGGCGCGCCGGG
>site_16
CAGGCCGCGCCCGT
>site_17
ACGGGCGCGGCCTG
>site_18
TTGGTCGCGCCCGG
>site_19
CCGGGCGCGACCAA
>site_20
CGGAGCGCGCCCAT
>site_21
ATGGGCGCGCTCCG
>site_22
GCGGGCGCGACCTT
>site_23
AAGGTCGCGCCCGC
a	14	11	0	36	0	2	3	36	2	37	1	16	15
c	11	8	6	3	1	36	37	0	36	0	35	9	10
g	11	14	34	1	37	2	0	2	1	2	3	12	5
t	4	7	0	0	2	0	0	2	1	1	1	3	10
//
; Sites	40
>site_0
AACAGCCACACAT
>site_1
CCGCGCCACACCT
>site_2
CGGAGCCGCACCA
>site_3
AGGAGCCAGACGA
>site_4
CGGAGCCACACGA
>site_5
GAGCGCCACACAA
>site_6
TGGAGGCACACCA
>site_7
ATGAGCCACGCCA
>site_8
ATGAGCCACAGAA
>site_9
AAGAGCCAAACGA
>site_10
CGGAGCCTCACGA
>site_11
GAGATCCACACTT
>site_12
ACCAGCCACACCT
>site_13
GCGAGCCACGCAT
>site_14
CCGAGCCGCACGC
>site_15
GAGGGCCACACAA
>site_16
CAGAGCCACAGAC
>site_17
GGGACCCACACAG
>site_18
AAGAGCAACACTC
>site_19
CGGAGACACACCT
>site_20
GGCAGCCACACGC
>site_21
AACAGCCACACGC
>site_22
TGGAGCCACACTG
>site_23
GCCAGCCACACAC
>site_24
CTGAGCCAAACGA
>site_25
CGGCGCCACACGC
>site_26
ACGAGCCACAGCT
>site_27
ATGAGCAACACCA
>site_28
CAGAGCCACTCAC
>site_29
TGGAGCCACATGG
>site_30
AAGAGCCACACAT
>site_31
TCGAGCCACAAGA
>site_32
GAGAGCCACACAT
>site_33
ACGAGCAACACAA
>site_34
AGGAGACACACAC
>site_35
AGCAGCCACACAG
>site_36
GGGAGCCATACGT
>site_37
GTGAGGCACACAG
>site_38
GTGATCCACACCA
>site_39
CTGAGCCTCACAC
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.131429
; Job done	2021-02-18.131429
; Seconds	0.16
;	user	0.16
;	system	0.02
;	cuser	0
;	csystem	0