; convert-matrix  -v 1 -i W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W11/regulonW11.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	6	8	26	25	26	4	9	7	9	7	6	4	8	8	26	26	0	0	6	3
c	7	12	0	1	0	5	5	6	6	6	4	9	3	9	0	0	26	0	5	8
g	4	2	0	0	0	9	4	5	5	4	6	5	8	4	0	0	0	1	5	6
t	9	4	0	0	0	8	8	8	6	9	10	8	7	5	0	0	0	25	10	9
//
; Sites	26
>site_0
ACAAAGGATGTCTTAACTTT
>site_1
CAAAAGTGATTGAAAACTGA
>site_2
AGAAATACATATCTAACGGC
>site_3
CAAAACCCTCTACCAACTTC
>site_4
CCAAAAATCAAGTGAACTAG
>site_5
TCAAATTTGAATGCAACTAT
>site_6
CAAAACCGATGCAGAACTTG
>site_7
TCAAAACGACGAAGAACTTG
>site_8
AAAAAGATCAACGCAACTAC
>site_9
TCAAATTTGCCCAAAACTAG
>site_10
TTAAACTATAGTTAAACTTT
>site_11
GTAAATACACGTAAAACTGT
>site_12
CTACAGTACTCCGTAACTCG
>site_13
CTAAAGCAAGTATCAACTCC
>site_14
GCAAAGATGGTGGAAACTGC
>site_15
AAAAATGCCATTGCAACTCC
>site_16
GCAAATTCCACTGCAACTTC
>site_17
ACAAAGGATGTTTCAACTTT
>site_18
TCAAAGGCTTTTAAAACTTT
>site_19
AGAAACCTGCTCTTAACTCT
>site_20
TAAAATAAATGAGTAACTGA
>site_21
CCAAAAAGAAAGTAAACTTA
>site_22
TAAAACTTCCCGCCAACTCC
>site_23
TCAAAAATATGCAAAACTAT
>site_24
TCAAATAATTTCAGAACTAT
>site_25
GAAAAGTGGTACGCAACTTG
a	18	17	0	0	0	13	11	14	16	6	0	0	0	19	13
c	17	20	0	0	60	28	12	16	21	13	0	60	60	4	12
g	12	4	60	60	0	13	21	16	12	28	60	0	0	20	17
t	13	19	0	0	0	6	16	14	11	13	0	0	0	17	18
//
; Sites	60
>site_0
TCGGCCGTTGGCCTT
>site_1
AAGGCCAACGGCCGA
>site_2
CTGGCTCTGGGCCCC
>site_3
GGGGCCCAGAGCCAG
>site_4
CTGGCTTACCGCCGT
>site_5
ACGGCGGTAAGCCAG
>site_6
CTGGCTGCAGGCCTG
>site_7
CAGGCCTGCAGCCAG
>site_8
TTGGCATGTGGCCGT
>site_9
ACGGCCACATGCCAA
>site_10
CTGGCCCTAGGCCAT
>site_11
ATGGCCTAGGGCCAG
>site_12
CCGGCAACACGCCAA
>site_13
TTGGCGTGTTGCCGG
>site_14
TTGGCCTTTTGCCGC
>site_15
GCGGCAAAAGGCCAA
>site_16
CAGGCCAAGCGCCAT
>site_17
ATGGCGCTTGGCCTG
>site_18
TTGGCCTCCTGCCAA
>site_19
TTGGCAGGAGGCCAA
>site_20
GAGGCGCGGTGCCTT
>site_21
AAGGCACCGCGCCTC
>site_22
CCGGCGGCTCGCCAT
>site_23
ATGGCGAGCCGCCGG
>site_24
TGGGCCTCATGCCGT
>site_25
ACGGCATGAGGCCCA
>site_26
CAGGCAGCGGGCCCC
>site_27
GGGGCCCGCTGCCTG
>site_28
TCGGCCGCCCGCCTC
>site_29
GAGGCGGGCGGCCGA
>site_30
GTGGCCCTGTGCCGT
>site_31
ACGGCACAGGGCCAC
>site_32
TAGGCTTCTGGCCGG
>site_33
CCGGCCAGAAGCCTA
>site_34
CAGGCGGGGGGCCGC
>site_35
GCGGCCCCCCGCCTG
>site_36
CAGGCTCACTGCCAT
>site_37
ATGGCAGTGAGCCTG
>site_38
ATGGCAGCTTGCCGT
>site_39
ACGGCAAGCTGCCAT
>site_40
CGGGCGAGCGGCCAT
>site_41
ATGGCCGCTCGCCCG
>site_42
AAGGCGGAAGGCCGC
>site_43
GCGGCCTTCCGCCTT
>site_44
TTGGCCTTTGGCCTT
>site_45
AAGGCCAAAGGCCAA
>site_46
TTGGCCGTGTGCCTA
>site_47
TAGGCACACGGCCAA
>site_48
CAGGCCAAAAGCCTT
>site_49
AAGGCTTTTGGCCTG
>site_50
CCGGCCGGACGCCGT
>site_51
ACGGCGTCCGGCCGG
>site_52
AAGGCCGCCGGCCGC
>site_53
GCGGCCGGCGGCCTT
>site_54
TAGGCAGACCGCCGG
>site_55
CCGGCGGTCTGCCTA
>site_56
CCGGCCGCAGGCCGC
>site_57
GCGGCCTGCGGCCGG
>site_58
GTGGCCGAACGCCGC
>site_59
GCGGCGTTCGGCCAC
a	11	8	0	35	0	9	15	7	11	13	12	9	11	9	35	35	0	13	10
c	4	6	35	0	0	10	4	8	8	4	7	7	8	10	0	0	0	7	10
g	11	16	0	0	35	10	12	15	7	9	11	10	8	12	0	0	35	9	11
t	9	5	0	0	0	6	4	5	9	9	5	9	8	4	0	0	0	6	4
//
; Sites	35
>site_0
CGCAGGAGCAGTTGAAGGC
>site_1
AGCAGCCGTATGTCAAGGA
>site_2
TCCAGCGCCTTAACAAGTC
>site_3
AACAGAAGAAACCGAAGAA
>site_4
GGCAGGGTGGACGGAAGAG
>site_5
AACAGGAATCAGCGAAGAA
>site_6
TGCAGTATGAAATCAAGGA
>site_7
GACAGGGTGTACACAAGTG
>site_8
AGCAGTTTAAGTTTAAGAG
>site_9
GACAGCACTAGTGGAAGGC
>site_10
TGCAGGAGGAGAAGAAGGG
>site_11
GACAGAGCCGCCGGAAGAA
>site_12
TCCAGCTGCGATCCAAGCA
>site_13
ACCAGGCTAGAAGAAAGAC
>site_14
CGCAGAAGATGACCAAGCG
>site_15
ATCAGTGAACATGGAAGCT
>site_16
AGCAGCGGTTAGGAAAGCA
>site_17
AGCAGAGAGAGAAAAAGAG
>site_18
CACAGAAAGCAGCAAAGAT
>site_19
TTCAGAAGTTGTAAAAGAT
>site_20
GTCAGCCCAGCCCAAAGGA
>site_21
TGCAGAAGCACGGGAAGAC
>site_22
GACAGTAGTTGATCAAGAC
>site_23
GCCAGCGGTTAGCAAAGGG
>site_24
AGCAGTGCTGGGATAAGTG
>site_25
CGCAGCGCAGCCACAAGAA
>site_26
ATCAGGCGATGGATAAGGC
>site_27
GGCAGGGAACTGAAAAGCG
>site_28
TGCAGAAAGGAATGAAGGC
>site_29
ACCAGCAGTACATTAAGCT
>site_30
GGCAGCACAAGTCGAAGAA
>site_31
TGCAGGGGCTCCACAAGTC
>site_32
TCCAGGTCCGTGAGAAGTG
>site_33
GACAGTTGCATTTCAAGTG
>site_34
GTCAGAAAAACTGAAAGCC
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.131640
; Job done	2021-02-18.131640
; Seconds	0.16
;	user	0.16
;	system	0.02
;	cuser	0
;	csystem	0