; convert-matrix  -v 1 -i W12/regulonW12.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o W12/regulonW12.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	W12/regulonW12.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	W12/regulonW12.rm.fna.peaks-rm/results/dyads_test_vs_ctrl/peaks_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	0	2	3	4	0	4	0	0	1	4	1	2	3	3	0	3	0	3	1	1
c	1	2	0	0	0	0	0	3	1	0	0	0	0	1	0	1	0	1	1	1
g	2	0	1	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	1
t	1	0	0	0	4	0	3	0	1	0	3	1	1	0	4	0	4	0	2	1
//
; Sites	4
>site_0
CAAATATGGATGAATCTATT
>site_1
GAAATAGCAAATAATATAAA
>site_2
TCGATATCCATAAATATCTG
>site_3
GCAATATCTATATCTATACC
a	0	0	0	0	0	2	0	0	0	2	0	2	0	0	0
c	0	1	2	0	0	0	0	1	2	0	0	0	1	1	1
g	0	0	0	2	0	0	1	1	0	0	0	0	1	0	1
t	2	1	0	0	2	0	1	0	0	0	2	0	0	1	0
//
; Sites	2
>site_0
TTCGTATGCATACTG
>site_1
TCCGTAGCCATAGCC
a	4	1	11	0	10	0	0	3	10	1	6	7	10	5	9	4	2	8	4	4	4
c	2	1	0	2	0	1	4	1	0	1	0	0	0	0	1	1	1	1	0	2	2
g	3	3	0	0	1	0	1	4	0	0	2	0	1	0	0	0	0	0	4	1	2
t	2	6	0	9	0	10	6	3	1	9	3	4	0	6	1	6	8	2	3	4	3
//
; Sites	11
>site_0
ATATATCAACATGTATTAGTG
>site_1
ACATGTTGATATATATTTGCA
>site_2
ATATATGAATGAAAAATATTA
>site_3
TTATATTATTTAAATTTAGAC
>site_4
CAATATTTATATATACTCTAT
>site_5
TGATATTTAATAAAATAAATA
>site_6
CGATATCCATAAATATCTGAT
>site_7
GGATATCGATAAATCAAATGT
>site_8
GTACATCTATATATAATAATG
>site_9
ATATATTGATGAAAAATAACA
>site_10
GTACACTGATTAAAATTAAAC
a	3	4	1	12	1	9	4	10	2	8	9	14	1	10	4	7	10	3	15	1	14	5	4
c	3	5	0	2	0	4	2	0	1	1	1	1	0	1	3	2	3	0	1	0	2	1	3
g	3	2	1	0	1	0	2	0	1	2	1	1	0	2	1	3	1	6	0	0	0	3	4
t	7	5	14	2	14	3	8	6	12	5	5	0	15	3	8	4	2	7	0	15	0	7	5
//
; Sites	16
>site_0
TTTAGAGAGAAATTAGAGATAGG
>site_1
CTGATATATAAATTCGATATAGA
>site_2
TCTATCAAAGAGTATACAATAAT
>site_3
ATTATTGTATACTCTTTGATAGA
>site_4
ATTATATATGAATGAAAAATATT
>site_5
TGTCTAAATTTAAATAATATAAA
>site_6
TCTAAATTTAAATAATATAAATG
>site_7
TGTATATATTTATAGGGGATATG
>site_8
AATATTTATATATACTCTATCCA
>site_9
GCAATATTTATATATACTCTATC
>site_10
TATTTTATTAAATATCAGATATT
>site_11
GATATCCATAAATATCTGATATT
>site_12
CATATATATTGATGAAAAATAAC
>site_13
GCTATACACAAATATAAGATCAG
>site_14
TCTCTCTTTTCATTCTATATAAT
>site_15
CTTTTCATTCTATATAATATATC
a	2	2	0	8	1	4	3	7	2	6	6	8	0	6	1	4	4	3	7	1	8	2	1	2	8	1	5	4	6
c	1	2	0	0	0	3	1	0	0	0	0	0	0	0	1	2	1	0	0	1	1	0	0	2	0	1	0	2	1
g	1	2	1	0	0	0	1	0	1	2	0	1	0	2	1	2	1	3	0	0	0	1	3	2	1	0	3	2	2
t	5	3	8	1	8	2	4	2	6	1	3	0	9	1	6	1	3	3	2	7	0	6	5	3	0	7	1	1	0
//
; Sites	9
>site_0
TGTATCTAAATATGTATTTAATGCATACG
>site_1
CTGATATATAAATTCGATATAGATGTACG
>site_2
TCTATCAAAGAGTATACAATAATGATGGA
>site_3
ATTATATATGAATGAAAAATATTAATGAA
>site_4
TGTATATATTTATAGGGGATATGGATAAA
>site_5
ACTAAAAATATATATTAAACATGCATAAA
>site_6
TATTTTATTAAATATCAGATATTTATGGA
>site_7
GATATCCATAAATATCTGATATTTAATAA
>site_8
TTTATTGTGAAATATATTTTCATAACATC
; Host name	baobab.eead.csic.es
; Job started	2021-02-18.135326
; Job done	2021-02-18.135326
; Seconds	0.17
;	user	0.17
;	system	0.02
;	cuser	0
;	csystem	0